Wall clock time and date at job start Mon Mar 30 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35970 * 117.00221 * 2 1 4 4 C 1.39344 * 119.87451 * 359.97438 * 3 2 1 5 5 C 1.37934 * 120.65641 * 179.97438 * 4 3 2 6 6 C 1.38786 * 120.09095 * 0.06351 * 5 4 3 7 7 O 1.35026 * 132.97399 * 179.62614 * 6 5 4 8 8 C 1.34950 * 109.84073 * 179.88715 * 7 6 5 9 9 C 1.46804 * 125.31189 * 180.16719 * 8 7 6 10 10 O 1.22011 * 119.99961 * 180.28133 * 9 8 7 11 11 C 1.41389 * 119.99855 * 0.27198 * 9 8 7 12 12 H 1.08001 * 120.00476 * 0.02562 * 11 9 8 13 13 C 1.40442 * 119.99960 * 180.02562 * 11 9 8 14 14 N 1.30483 * 119.99876 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00199 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47227 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47079 * 120.00264 * 15 13 11 18 18 H 1.48504 * 109.47418 * 240.00364 * 15 13 11 19 19 C 1.36645 * 109.37912 * 0.40351 * 8 7 6 20 20 C 1.40905 * 119.49159 * 359.93414 * 6 5 4 21 21 C 1.37938 * 119.88304 * 179.97438 * 3 2 1 22 22 H 1.08998 * 109.47053 * 299.99209 * 1 2 3 23 23 H 1.08995 * 109.47194 * 60.00182 * 1 2 3 24 24 H 1.09011 * 109.47044 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.67588 * 0.03970 * 4 3 2 26 26 H 1.07993 * 119.95371 * 180.02562 * 5 4 3 27 27 H 0.96999 * 119.99614 * 179.97438 * 14 13 11 28 28 H 1.07991 * 126.57817 * 179.78172 * 19 8 7 29 29 H 1.08000 * 120.20217 * 359.96205 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2849 2.3785 -0.0005 5 6 1.8943 3.6159 0.0000 6 6 3.2790 3.7096 -0.0003 7 8 4.1306 4.7574 -0.0064 8 6 5.4046 4.3122 -0.0009 9 6 6.6008 5.1631 -0.0015 10 8 7.7104 4.6557 -0.0014 11 6 6.4671 6.5707 -0.0023 12 1 5.4849 7.0199 -0.0021 13 6 7.6115 7.3848 -0.0034 14 7 8.7982 6.8422 -0.0041 15 14 7.4349 9.2444 -0.0038 16 1 5.9943 9.6048 -0.0022 17 1 8.0860 9.8037 1.2081 18 1 8.0840 9.8031 -1.2170 19 6 5.4074 2.9457 -0.0001 20 6 4.0539 2.5327 0.0003 21 6 3.4240 1.2808 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0278 -0.0005 25 1 0.2068 2.3135 -0.0003 26 1 1.2932 4.5130 0.0000 27 1 9.5885 7.4045 -0.0052 28 1 6.2759 2.3040 0.0005 29 1 4.0135 0.3759 0.0016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396140084.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:39 Heat of formation + Delta-G solvation = -74.227585 kcal Electronic energy + Delta-G solvation = -16598.671522 eV Core-core repulsion = 13645.813964 eV Total energy + Delta-G solvation = -2952.857558 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.42046 -40.59299 -38.84731 -37.38136 -35.02966 -33.83663 -31.16152 -30.68894 -28.93809 -27.88710 -25.17261 -23.33519 -22.55449 -21.57792 -19.44674 -18.55420 -18.48844 -17.74825 -17.20876 -16.70328 -16.50572 -16.03793 -15.28738 -15.17989 -14.51059 -14.29039 -14.25661 -14.07925 -13.81367 -13.34174 -13.27210 -12.80679 -12.77269 -12.68729 -12.03922 -11.79060 -11.74604 -11.26871 -11.08660 -10.03302 -9.18499 -9.02340 -8.56235 -7.29865 -0.39316 0.36951 0.97731 1.36833 1.41773 1.57045 1.82939 2.16852 2.28517 2.33862 2.63894 3.38905 3.56871 3.73956 3.86279 4.12336 4.22375 4.36932 4.46057 4.49035 4.54261 4.77693 4.85795 5.00956 5.02445 5.15065 5.21538 5.40154 5.43077 5.79715 6.00660 6.42647 6.49228 6.52252 7.92957 8.27985 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.055092 B = 0.004864 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.115575 B = 5754.774694 C = 6247.744658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.332 6.332 3 C 0.114 3.886 4 C -0.164 4.164 5 C -0.062 4.062 6 C -0.021 4.021 7 O -0.183 6.183 8 C 0.005 3.995 9 C 0.384 3.616 10 O -0.572 6.572 11 C -0.517 4.517 12 H 0.091 0.909 13 C 0.021 3.979 14 N -0.769 5.769 15 Si 1.006 2.994 16 H -0.248 1.248 17 H -0.257 1.257 18 H -0.257 1.257 19 C -0.208 4.208 20 C -0.100 4.100 21 C -0.134 4.134 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.120 0.880 25 H 0.183 0.817 26 H 0.164 0.836 27 H 0.292 0.708 28 H 0.151 0.849 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.592 -5.544 0.007 18.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.069 3.931 4 C -0.182 4.182 5 C -0.080 4.080 6 C -0.068 4.068 7 O -0.084 6.084 8 C -0.044 4.044 9 C 0.285 3.715 10 O -0.467 6.467 11 C -0.546 4.546 12 H 0.109 0.891 13 C -0.200 4.200 14 N -0.397 5.397 15 Si 0.822 3.178 16 H -0.171 1.171 17 H -0.181 1.181 18 H -0.181 1.181 19 C -0.228 4.228 20 C -0.101 4.101 21 C -0.153 4.153 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.138 0.862 25 H 0.200 0.800 26 H 0.182 0.818 27 H 0.103 0.897 28 H 0.168 0.832 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.930 -5.755 0.005 17.881 hybrid contribution 0.431 0.428 0.001 0.607 sum -16.499 -5.327 0.006 17.338 Atomic orbital electron populations 1.23442 0.75960 1.05874 1.02741 1.86073 1.23865 1.25693 1.88947 1.18660 0.91220 0.85413 0.97843 1.21446 1.01774 0.89407 1.05572 1.20121 0.87460 1.00116 1.00345 1.20510 0.93576 0.84842 1.07880 1.84236 1.14978 1.33863 1.75280 1.24649 0.84071 0.95132 1.00583 1.17656 0.83699 0.89242 0.80934 1.90590 1.25540 1.76994 1.53595 1.21449 0.95717 0.92462 1.44973 0.89052 1.27397 0.93434 1.07991 0.91175 1.70025 1.00157 1.40748 1.28752 0.84854 0.80611 0.72719 0.79576 1.17051 1.18135 1.18124 1.21767 0.96910 0.93948 1.10176 1.18762 0.92643 0.94426 1.04244 1.19791 0.92591 0.95660 1.07224 0.91167 0.91174 0.86203 0.79989 0.81847 0.89740 0.83165 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 15 2 O -0.33 -7.57 10.49 -93.22 -0.98 -8.54 15 3 C 0.11 3.10 6.68 22.46 0.15 3.25 15 4 C -0.16 -3.74 9.02 22.46 0.20 -3.54 15 5 C -0.06 -1.77 10.05 22.33 0.22 -1.54 15 6 C -0.02 -0.82 7.39 23.05 0.17 -0.65 15 7 O -0.18 -8.76 10.36 -16.20 -0.17 -8.93 15 8 C 0.01 0.29 6.99 24.14 0.17 0.46 15 9 C 0.38 23.52 6.90 25.29 0.17 23.69 15 10 O -0.57 -38.70 15.38 -5.35 -0.08 -38.79 15 11 C -0.52 -29.75 9.13 23.58 0.22 -29.53 15 12 H 0.09 4.89 7.68 -2.91 -0.02 4.87 15 13 C 0.02 1.13 5.50 85.43 0.47 1.60 15 14 N -0.77 -44.41 11.72 21.90 0.26 -44.15 15 15 Si 1.01 38.51 29.56 68.60 2.03 40.53 15 16 H -0.25 -9.00 7.11 99.48 0.71 -8.29 15 17 H -0.26 -9.25 7.11 99.48 0.71 -8.54 15 18 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 19 C -0.21 -10.03 10.62 22.70 0.24 -9.79 15 20 C -0.10 -4.09 6.19 -21.36 -0.13 -4.22 15 21 C -0.13 -4.50 10.05 22.66 0.23 -4.27 15 22 H 0.07 0.64 7.65 -2.39 -0.02 0.62 15 23 H 0.07 0.64 7.65 -2.39 -0.02 0.62 15 24 H 0.12 0.89 8.14 -2.38 -0.02 0.87 15 25 H 0.18 2.40 6.26 -2.91 -0.02 2.38 15 26 H 0.16 3.55 8.06 -2.91 -0.02 3.52 15 27 H 0.29 14.70 8.29 -92.71 -0.77 13.94 15 28 H 0.15 7.10 8.06 -2.91 -0.02 7.07 15 29 H 0.14 4.29 8.06 -2.91 -0.02 4.26 15 Total: -1.00 -75.82 266.99 5.47 -70.35 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.19 Total: 12.79 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 3.22 Total: -23.27 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.26 Total: -44.15 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -1.23 Total: -56.26 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.53 kcal Total: -75.82 5.47 -70.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396140084.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.877 kcal (2) G-P(sol) polarization free energy of solvation -75.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds