Wall clock time and date at job start Mon Mar 30 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37331 * 119.54913 * 2 1 4 4 C 1.39869 * 122.48979 * 179.70893 * 3 2 1 5 5 S 1.76230 * 130.12096 * 180.20752 * 4 3 2 6 6 C 1.75479 * 91.55165 * 180.32840 * 5 4 3 7 7 C 1.32804 * 110.69580 * 359.97438 * 6 5 4 8 8 C 1.39882 * 115.80960 * 0.02562 * 7 6 5 9 9 C 1.47876 * 128.94541 * 179.97438 * 8 7 6 10 10 C 1.39760 * 120.72029 * 0.05024 * 9 8 7 11 11 H 1.07996 * 119.99609 * 220.93336 * 10 9 8 12 12 C 1.40507 * 120.00501 * 40.94324 * 10 9 8 13 13 N 1.30525 * 120.00328 * 17.58120 * 12 10 9 14 14 Si 1.86804 * 119.99956 * 197.59150 * 12 10 9 15 15 H 1.48499 * 109.46984 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47492 * 119.99522 * 14 12 10 17 17 H 1.48503 * 109.46696 * 239.99520 * 14 12 10 18 18 C 1.39774 * 119.54934 * 180.27506 * 2 1 3 19 19 C 1.46269 * 120.46408 * 0.02562 * 18 2 1 20 20 O 1.21395 * 119.99947 * 183.77210 * 19 18 2 21 21 H 1.09002 * 109.46747 * 269.72950 * 1 2 3 22 22 H 1.09001 * 109.47381 * 149.72692 * 1 2 3 23 23 H 1.09003 * 109.47215 * 29.72793 * 1 2 3 24 24 H 1.08000 * 118.75254 * 359.97438 * 3 2 1 25 25 H 1.08000 * 124.65132 * 179.97438 * 6 5 4 26 26 H 1.08000 * 122.09827 * 180.02562 * 7 6 5 27 27 H 0.97002 * 120.00431 * 174.94101 * 13 12 10 28 28 H 1.08001 * 120.00225 * 3.77183 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1843 1.1947 0.0000 4 6 3.5811 1.2664 0.0060 5 16 4.6461 2.6705 0.0121 6 6 6.0724 1.6484 0.0069 7 6 5.7302 0.3652 0.0017 8 6 4.3565 0.1012 0.0008 9 6 3.6608 -1.2036 -0.0049 10 6 4.3850 -2.3989 -0.0094 11 1 4.0608 -3.2243 -0.6258 12 6 5.5348 -2.5269 0.7880 13 7 5.7417 -1.6958 1.7730 14 14 6.7674 -3.8863 0.4384 15 1 6.3041 -4.6879 -0.7227 16 1 8.0908 -3.2874 0.1305 17 1 6.8867 -4.7646 1.6299 18 6 2.1963 -1.2159 -0.0058 19 6 1.4653 -2.4828 -0.0125 20 8 2.0705 -3.5332 0.0516 21 1 -0.3633 -0.0049 1.0277 22 1 -0.3634 -0.8875 -0.5181 23 1 -0.3634 0.8924 -0.5096 24 1 1.6168 2.1136 -0.0004 25 1 7.0891 2.0128 0.0078 26 1 6.4664 -0.4251 -0.0016 27 1 6.4959 -1.8277 2.3686 28 1 0.3871 -2.4838 -0.0744 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396333334.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:35 Heat of formation + Delta-G solvation = -16.293367 kcal Electronic energy + Delta-G solvation = -15235.798123 eV Core-core repulsion = 12728.205652 eV Total energy + Delta-G solvation = -2507.592471 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18344 -38.72518 -36.41161 -35.63740 -32.08110 -31.42539 -28.14931 -26.74001 -25.01594 -23.16340 -22.08526 -20.30590 -19.22935 -17.81396 -17.55506 -16.67470 -16.26790 -15.63579 -15.17306 -15.00519 -14.49533 -14.17782 -14.06744 -13.80672 -13.54819 -13.41120 -13.12011 -12.88645 -12.58739 -12.40045 -12.21387 -11.82273 -11.46729 -11.32263 -10.95454 -10.11980 -9.77596 -9.00192 -8.92191 -8.31879 -6.53232 -0.00237 0.49627 0.93601 1.29180 1.31674 1.38680 1.46131 1.55900 2.10090 2.23660 2.56745 3.43594 3.83483 4.20001 4.39237 4.45295 4.65261 4.80672 4.84226 4.97330 4.98783 5.14073 5.21402 5.27208 5.40636 5.49553 5.83579 5.92430 5.95445 6.15162 6.37321 6.57365 6.77446 7.21856 8.01996 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.012909 C = 0.007719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.015802 B = 2168.471595 C = 3626.722718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.029 3.971 3 C -0.246 4.246 4 C -0.089 4.089 5 S 0.060 5.940 6 C -0.267 4.267 7 C -0.058 4.058 8 C -0.169 4.169 9 C 0.161 3.839 10 C -0.421 4.421 11 H 0.091 0.909 12 C 0.040 3.960 13 N -0.776 5.776 14 Si 0.976 3.024 15 H -0.261 1.261 16 H -0.250 1.250 17 H -0.261 1.261 18 C -0.364 4.364 19 C 0.371 3.629 20 O -0.531 6.531 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.120 0.880 25 H 0.176 0.824 26 H 0.118 0.882 27 H 0.300 0.700 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 4.180 -1.733 4.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.025 3.975 3 C -0.270 4.270 4 C -0.205 4.205 5 S 0.322 5.678 6 C -0.400 4.400 7 C -0.087 4.087 8 C -0.177 4.177 9 C 0.155 3.845 10 C -0.447 4.447 11 H 0.109 0.891 12 C -0.182 4.182 13 N -0.398 5.398 14 Si 0.796 3.204 15 H -0.185 1.185 16 H -0.174 1.174 17 H -0.185 1.185 18 C -0.368 4.368 19 C 0.240 3.760 20 O -0.414 6.414 21 H 0.101 0.899 22 H 0.099 0.901 23 H 0.101 0.899 24 H 0.138 0.862 25 H 0.193 0.807 26 H 0.135 0.865 27 H 0.112 0.888 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.729 5.354 -1.521 5.829 hybrid contribution 0.963 -1.897 0.184 2.135 sum -0.767 3.458 -1.337 3.786 Atomic orbital electron populations 1.20953 0.88788 1.03905 1.03319 1.19870 0.96610 0.90927 0.90064 1.19610 0.90143 0.97634 1.19601 1.22999 0.98429 0.95637 1.03479 1.83116 0.96677 1.08384 1.79638 1.25073 1.01920 0.95676 1.17359 1.19791 0.95239 0.95953 0.97691 1.19439 0.92605 0.93021 1.12644 1.19902 0.90867 0.90694 0.83020 1.19994 1.05231 0.99468 1.19988 0.89087 1.26957 0.98136 0.99456 0.93607 1.69719 1.26861 1.33457 1.09780 0.85239 0.77462 0.77742 0.79994 1.18471 1.17410 1.18500 1.21416 0.92948 0.95485 1.26977 1.23711 0.94670 0.86427 0.71178 1.90427 1.74089 1.35918 1.40946 0.89893 0.90051 0.89929 0.86243 0.80668 0.86456 0.88808 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.13 9.51 71.24 0.68 -2.45 15 2 C 0.03 1.17 5.90 -19.71 -0.12 1.05 15 3 C -0.25 -10.34 9.56 22.45 0.21 -10.12 15 4 C -0.09 -4.12 6.48 23.08 0.15 -3.97 15 5 S 0.06 2.30 23.30 -56.49 -1.32 0.99 15 6 C -0.27 -10.72 11.11 66.64 0.74 -9.98 15 7 C -0.06 -2.71 8.26 21.49 0.18 -2.53 15 8 C -0.17 -8.63 5.51 -19.91 -0.11 -8.74 15 9 C 0.16 8.65 5.65 -18.22 -0.10 8.55 15 10 C -0.42 -22.71 7.42 23.19 0.17 -22.53 15 11 H 0.09 5.11 6.44 -2.91 -0.02 5.09 15 12 C 0.04 1.97 3.97 85.44 0.34 2.31 15 13 N -0.78 -38.62 10.75 21.92 0.24 -38.38 15 14 Si 0.98 37.50 29.60 68.60 2.03 39.53 15 15 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 16 H -0.25 -8.83 7.11 99.48 0.71 -8.12 15 17 H -0.26 -9.61 7.11 99.48 0.71 -8.90 15 18 C -0.36 -17.33 6.05 -18.68 -0.11 -17.44 15 19 C 0.37 16.19 10.85 69.91 0.76 16.94 15 20 O -0.53 -27.32 14.73 -3.39 -0.05 -27.37 15 21 H 0.08 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.08 1.96 6.24 -2.39 -0.01 1.95 15 23 H 0.08 1.93 8.07 -2.39 -0.02 1.91 15 24 H 0.12 4.30 8.05 -2.91 -0.02 4.28 15 25 H 0.18 5.76 8.06 -2.91 -0.02 5.73 15 26 H 0.12 5.60 6.14 -2.91 -0.02 5.58 15 27 H 0.30 13.31 8.30 -92.71 -0.77 12.54 15 28 H 0.12 3.79 6.29 -2.91 -0.02 3.78 15 Total: -1.00 -62.71 255.68 4.88 -57.83 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.20 Total: 16.32 kcal Atomic # 6 Polarization: -51.70 SS G_CDS: 2.79 Total: -48.91 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.24 Total: -38.38 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.05 Total: -27.37 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.32 Total: 0.99 kcal Total: -62.71 4.88 -57.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396333334.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.534 kcal (2) G-P(sol) polarization free energy of solvation -62.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds