Wall clock time and date at job start Mon Mar 30 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36095 * 119.62827 * 2 1 4 4 C 1.40333 * 120.15477 * 179.97438 * 3 2 1 5 5 C 1.46848 * 120.06783 * 179.97438 * 4 3 2 6 6 O 1.21299 * 119.99825 * 359.97438 * 5 4 3 7 7 C 1.39342 * 119.86937 * 359.97438 * 4 3 2 8 8 C 1.40003 * 120.03184 * 359.97438 * 7 4 3 9 9 C 1.46725 * 129.46835 * 180.02562 * 8 7 4 10 10 C 1.40720 * 123.30008 * 0.02562 * 9 8 7 11 11 H 1.08006 * 119.99568 * 337.27354 * 10 9 8 12 12 C 1.39788 * 120.00146 * 157.27857 * 10 9 8 13 13 N 1.31026 * 119.99841 * 160.57267 * 12 10 9 14 14 Si 1.86791 * 120.00182 * 340.57399 * 12 10 9 15 15 H 1.48502 * 109.47403 * 94.05365 * 14 12 10 16 16 H 1.48497 * 109.47561 * 214.05559 * 14 12 10 17 17 H 1.48500 * 109.47152 * 334.05583 * 14 12 10 18 18 C 1.36394 * 113.40024 * 179.97438 * 9 8 7 19 19 S 1.69962 * 112.05005 * 0.02562 * 18 9 8 20 20 C 1.39732 * 119.35171 * 0.02562 * 8 7 4 21 21 H 1.08999 * 109.46814 * 89.99764 * 1 2 3 22 22 H 1.08998 * 109.47101 * 209.99835 * 1 2 3 23 23 H 1.08998 * 109.46691 * 330.00305 * 1 2 3 24 24 H 1.08001 * 119.92058 * 0.25918 * 3 2 1 25 25 H 1.07999 * 120.00333 * 180.02562 * 5 4 3 26 26 H 1.07995 * 119.98216 * 180.02562 * 7 4 3 27 27 H 0.97000 * 119.99973 * 179.97438 * 13 12 10 28 28 H 1.07998 * 123.97950 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1799 1.1830 0.0000 4 6 3.5832 1.1959 0.0005 5 6 4.3072 2.4735 0.0000 6 8 3.6923 3.5191 -0.0014 7 6 4.2882 -0.0060 0.0016 8 6 3.5973 -1.2236 0.0027 9 6 4.1221 -2.5938 0.0044 10 6 5.4968 -2.8946 0.0058 11 1 6.2090 -2.1675 -0.3556 12 6 5.9406 -4.1343 0.4750 13 7 7.1287 -4.5742 0.1407 14 14 4.8399 -5.1639 1.5784 15 1 4.0716 -6.1280 0.7504 16 1 5.6748 -5.9067 2.5563 17 1 3.8980 -4.2756 2.3057 18 6 3.1469 -3.5474 0.0057 19 16 1.5893 -2.8672 0.0041 20 6 2.1999 -1.2183 0.0021 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6325 2.1140 0.0042 25 1 5.3872 2.4822 0.0000 26 1 5.3681 0.0018 0.0025 27 1 7.4368 -5.4343 0.4665 28 1 3.3415 -4.6097 0.0074 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396334109.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:41 Heat of formation + Delta-G solvation = -12.734298 kcal Electronic energy + Delta-G solvation = -14740.294468 eV Core-core repulsion = 12232.856330 eV Total energy + Delta-G solvation = -2507.438138 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.48037 -38.02515 -35.33157 -32.97284 -32.27898 -29.17197 -26.99819 -25.90692 -24.27923 -22.17714 -20.46175 -19.30548 -17.28303 -16.66839 -16.12295 -15.51638 -14.96694 -14.27706 -14.21916 -14.09077 -13.44151 -13.25132 -12.78558 -12.54376 -12.18816 -11.97056 -11.83589 -11.64447 -11.11655 -10.81046 -10.43377 -10.19841 -9.86830 -9.74040 -9.47352 -9.30895 -8.67853 -7.74622 -7.11741 -7.03686 -4.58898 1.00491 1.62185 2.51989 2.66200 2.93172 3.10440 3.22444 3.43408 3.47591 3.92204 4.23270 4.57740 4.99922 5.14829 5.28812 5.48442 5.57618 5.76162 5.83123 5.95595 6.05368 6.19883 6.48635 6.60399 6.63752 6.82463 6.87530 7.16708 7.39425 7.46634 7.71730 8.11643 8.27061 8.61826 9.90047 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024783 B = 0.008635 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.545463 B = 3241.761626 C = 4212.906109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.086 4.086 3 C -0.060 4.060 4 C -0.223 4.223 5 C 0.391 3.609 6 O -0.482 6.482 7 C -0.010 4.010 8 C -0.080 4.080 9 C 0.090 3.910 10 C -0.416 4.416 11 H 0.093 0.907 12 C 0.087 3.913 13 N -0.800 5.800 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.294 1.294 17 H -0.241 1.241 18 C -0.466 4.466 19 S 0.083 5.917 20 C -0.102 4.102 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.126 0.874 25 H 0.099 0.901 26 H 0.132 0.868 27 H 0.288 0.712 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 4.905 0.956 8.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.092 4.092 3 C -0.082 4.082 4 C -0.228 4.228 5 C 0.252 3.748 6 O -0.358 6.358 7 C -0.030 4.030 8 C -0.090 4.090 9 C 0.082 3.918 10 C -0.446 4.446 11 H 0.111 0.889 12 C -0.134 4.134 13 N -0.423 5.423 14 Si 0.746 3.254 15 H -0.199 1.199 16 H -0.222 1.222 17 H -0.164 1.164 18 C -0.600 4.600 19 S 0.348 5.652 20 C -0.219 4.219 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.144 0.856 25 H 0.115 0.885 26 H 0.150 0.850 27 H 0.098 0.902 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.772 4.484 0.944 9.022 hybrid contribution 1.364 -0.403 0.407 1.479 sum -6.408 4.080 1.352 7.717 Atomic orbital electron populations 1.20746 0.91343 1.02432 1.02118 1.18854 0.95487 0.90704 1.04152 1.20564 0.93085 0.96914 0.97599 1.20457 0.94754 0.95073 1.12544 1.23868 0.94768 0.86689 0.69506 1.90468 1.73184 1.35269 1.36856 1.21190 0.99703 0.89761 0.92380 1.19473 0.91655 0.94472 1.03401 1.17407 0.94106 0.87310 0.93006 1.18957 0.90776 1.00119 1.34788 0.88914 1.26138 0.95280 0.96951 0.95002 1.69762 1.18709 1.19066 1.34776 0.86117 0.79679 0.79505 0.80081 1.19906 1.22181 1.16424 1.23649 0.94682 1.01669 1.40009 1.81700 1.10124 0.93943 1.79465 1.23011 0.96977 0.97766 1.04140 0.91404 0.91702 0.91635 0.85582 0.88525 0.85007 0.90167 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.85 36.01 0.35 -1.16 15 2 C -0.09 -1.50 5.87 -104.67 -0.61 -2.11 15 3 C -0.06 -1.02 9.13 -39.56 -0.36 -1.38 15 4 C -0.22 -3.74 5.86 -105.22 -0.62 -4.36 15 5 C 0.39 5.70 11.43 34.21 0.39 6.09 15 6 O -0.48 -8.30 17.15 5.54 0.10 -8.21 15 7 C -0.01 -0.19 9.60 -38.51 -0.37 -0.56 15 8 C -0.08 -1.74 6.02 -105.25 -0.63 -2.37 15 9 C 0.09 2.20 5.34 -106.20 -0.57 1.63 15 10 C -0.42 -10.62 9.57 -38.07 -0.36 -10.98 15 11 H 0.09 2.40 7.88 -52.48 -0.41 1.98 15 12 C 0.09 2.19 5.45 -17.32 -0.09 2.10 15 13 N -0.80 -20.43 13.94 55.54 0.77 -19.66 15 14 Si 0.92 20.59 24.56 -169.99 -4.17 16.42 15 15 H -0.27 -6.04 6.66 56.52 0.38 -5.67 15 16 H -0.29 -6.34 7.11 56.52 0.40 -5.94 15 17 H -0.24 -5.56 6.77 56.52 0.38 -5.18 15 18 C -0.47 -11.05 8.07 30.07 0.24 -10.80 15 19 S 0.08 1.67 22.20 -107.50 -2.39 -0.71 15 20 C -0.10 -2.07 6.29 -38.31 -0.24 -2.31 15 21 H 0.07 0.86 8.14 -51.93 -0.42 0.43 15 22 H 0.06 0.89 7.55 -51.93 -0.39 0.49 15 23 H 0.06 0.77 8.07 -51.93 -0.42 0.35 15 24 H 0.13 1.93 7.64 -52.49 -0.40 1.53 15 25 H 0.10 1.06 8.06 -52.49 -0.42 0.64 15 26 H 0.13 2.20 7.88 -52.49 -0.41 1.79 15 27 H 0.29 6.68 8.30 -40.82 -0.34 6.34 15 28 H 0.14 3.34 4.35 -52.49 -0.23 3.11 15 LS Contribution 258.73 15.07 3.90 3.90 Total: -1.00 -27.63 258.73 -6.96 -34.58 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -2.29 Total: -0.11 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: -2.87 Total: -26.21 kcal Atomic # 7 Polarization: -20.43 SS G_CDS: 0.77 Total: -19.66 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.10 Total: -8.21 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.17 Total: 16.42 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.39 Total: -0.71 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.63 -6.96 -34.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396334109.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.850 kcal (2) G-P(sol) polarization free energy of solvation -27.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds