Wall clock time and date at job start Mon Mar 30 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36095 * 119.62827 * 2 1 4 4 C 1.40333 * 120.15477 * 179.97438 * 3 2 1 5 5 C 1.46848 * 120.06783 * 179.97438 * 4 3 2 6 6 O 1.21299 * 119.99825 * 359.97438 * 5 4 3 7 7 C 1.39342 * 119.86937 * 359.97438 * 4 3 2 8 8 C 1.40003 * 120.03184 * 359.97438 * 7 4 3 9 9 C 1.46725 * 129.46835 * 180.02562 * 8 7 4 10 10 C 1.40720 * 123.30008 * 0.02562 * 9 8 7 11 11 H 1.08006 * 119.99568 * 337.27354 * 10 9 8 12 12 C 1.39788 * 120.00146 * 157.27857 * 10 9 8 13 13 N 1.31026 * 119.99841 * 160.57267 * 12 10 9 14 14 Si 1.86791 * 120.00182 * 340.57399 * 12 10 9 15 15 H 1.48502 * 109.47403 * 94.05365 * 14 12 10 16 16 H 1.48497 * 109.47561 * 214.05559 * 14 12 10 17 17 H 1.48500 * 109.47152 * 334.05583 * 14 12 10 18 18 C 1.36394 * 113.40024 * 179.97438 * 9 8 7 19 19 S 1.69962 * 112.05005 * 0.02562 * 18 9 8 20 20 C 1.39732 * 119.35171 * 0.02562 * 8 7 4 21 21 H 1.08999 * 109.46814 * 89.99764 * 1 2 3 22 22 H 1.08998 * 109.47101 * 209.99835 * 1 2 3 23 23 H 1.08998 * 109.46691 * 330.00305 * 1 2 3 24 24 H 1.08001 * 119.92058 * 0.25918 * 3 2 1 25 25 H 1.07999 * 120.00333 * 180.02562 * 5 4 3 26 26 H 1.07995 * 119.98216 * 180.02562 * 7 4 3 27 27 H 0.97000 * 119.99973 * 179.97438 * 13 12 10 28 28 H 1.07998 * 123.97950 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1799 1.1830 0.0000 4 6 3.5832 1.1959 0.0005 5 6 4.3072 2.4735 0.0000 6 8 3.6923 3.5191 -0.0014 7 6 4.2882 -0.0060 0.0016 8 6 3.5973 -1.2236 0.0027 9 6 4.1221 -2.5938 0.0044 10 6 5.4968 -2.8946 0.0058 11 1 6.2090 -2.1675 -0.3556 12 6 5.9406 -4.1343 0.4750 13 7 7.1287 -4.5742 0.1407 14 14 4.8399 -5.1639 1.5784 15 1 4.0716 -6.1280 0.7504 16 1 5.6748 -5.9067 2.5563 17 1 3.8980 -4.2756 2.3057 18 6 3.1469 -3.5474 0.0057 19 16 1.5893 -2.8672 0.0041 20 6 2.1999 -1.2183 0.0021 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6325 2.1140 0.0042 25 1 5.3872 2.4822 0.0000 26 1 5.3681 0.0018 0.0025 27 1 7.4368 -5.4343 0.4665 28 1 3.3415 -4.6097 0.0074 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396334109.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:41 Heat of formation + Delta-G solvation = -28.006022 kcal Electronic energy + Delta-G solvation = -14740.956699 eV Core-core repulsion = 12232.856330 eV Total energy + Delta-G solvation = -2508.100370 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.87691 -39.40361 -37.00257 -34.73796 -33.64037 -30.79029 -28.45257 -27.43760 -25.71870 -23.79235 -21.81913 -20.92495 -18.88698 -18.41034 -17.46202 -17.13550 -16.44196 -15.87270 -15.64116 -15.41178 -14.98271 -14.71038 -14.26832 -14.07996 -13.66936 -13.62188 -13.24317 -12.98324 -12.78710 -12.50763 -12.00615 -11.83187 -11.59783 -11.42122 -11.10839 -10.72150 -10.19512 -9.34879 -8.99917 -8.66237 -6.47345 -0.37003 0.08580 0.96305 1.10936 1.27072 1.33521 1.45501 1.72546 1.73444 2.10054 2.71726 3.16821 3.41252 3.75371 3.91443 4.24044 4.31087 4.44694 4.56578 4.71993 4.80239 4.88014 4.98627 5.09462 5.22480 5.25540 5.42569 5.55135 5.59502 5.93245 6.20517 6.41531 6.51413 6.72524 8.06430 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024783 B = 0.008635 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.545463 B = 3241.761626 C = 4212.906109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.084 4.084 3 C -0.061 4.061 4 C -0.214 4.214 5 C 0.402 3.598 6 O -0.503 6.503 7 C -0.017 4.017 8 C -0.114 4.114 9 C 0.077 3.923 10 C -0.445 4.445 11 H 0.075 0.925 12 C 0.057 3.943 13 N -0.833 5.833 14 Si 0.964 3.036 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.254 1.254 18 C -0.481 4.481 19 S 0.113 5.887 20 C -0.119 4.119 21 H 0.082 0.918 22 H 0.064 0.936 23 H 0.090 0.910 24 H 0.147 0.853 25 H 0.145 0.855 26 H 0.143 0.857 27 H 0.296 0.704 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.796 6.546 1.294 10.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.090 4.090 3 C -0.083 4.083 4 C -0.219 4.219 5 C 0.264 3.736 6 O -0.379 6.379 7 C -0.037 4.037 8 C -0.124 4.124 9 C 0.068 3.932 10 C -0.476 4.476 11 H 0.093 0.907 12 C -0.160 4.160 13 N -0.459 5.459 14 Si 0.789 3.211 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.177 1.177 18 C -0.616 4.616 19 S 0.377 5.623 20 C -0.235 4.235 21 H 0.101 0.899 22 H 0.083 0.917 23 H 0.109 0.891 24 H 0.165 0.835 25 H 0.161 0.839 26 H 0.161 0.839 27 H 0.107 0.893 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.245 6.136 1.281 11.170 hybrid contribution 1.730 -0.714 0.254 1.889 sum -7.515 5.422 1.535 9.393 Atomic orbital electron populations 1.20843 0.88603 1.03707 1.03463 1.19271 0.97516 0.89664 1.02508 1.20936 0.93372 0.97535 0.96408 1.20837 0.95135 0.95594 1.10355 1.24326 0.96360 0.84966 0.67908 1.90479 1.74012 1.35708 1.37700 1.21322 1.00441 0.89400 0.92546 1.19589 0.92749 0.94347 1.05704 1.17650 0.93720 0.89151 0.92687 1.19012 0.91392 1.00427 1.36773 0.90665 1.26664 0.96129 0.97604 0.95622 1.69774 1.19804 1.20074 1.36235 0.85440 0.78373 0.78309 0.78936 1.19746 1.20573 1.17727 1.23892 0.97113 1.01504 1.39058 1.81362 1.07226 0.93768 1.79960 1.23259 0.96711 0.98670 1.04907 0.89899 0.91704 0.89138 0.83493 0.83865 0.83912 0.89346 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.63 9.85 71.24 0.70 -1.93 15 2 C -0.08 -2.69 5.87 -19.90 -0.12 -2.80 15 3 C -0.06 -1.87 9.13 22.28 0.20 -1.66 15 4 C -0.21 -6.61 5.86 -20.25 -0.12 -6.73 15 5 C 0.40 10.28 11.43 70.07 0.80 11.08 15 6 O -0.50 -15.55 17.15 -3.09 -0.05 -15.60 15 7 C -0.02 -0.62 9.60 22.96 0.22 -0.40 15 8 C -0.11 -4.95 6.02 -20.27 -0.12 -5.07 15 9 C 0.08 3.82 5.34 -20.88 -0.11 3.70 15 10 C -0.44 -23.51 9.57 23.25 0.22 -23.29 15 11 H 0.08 4.08 7.88 -2.91 -0.02 4.06 15 12 C 0.06 2.96 5.45 85.19 0.46 3.42 15 13 N -0.83 -43.71 13.94 21.81 0.30 -43.40 15 14 Si 0.96 43.00 24.56 68.60 1.68 44.69 15 15 H -0.27 -11.88 6.66 99.48 0.66 -11.22 15 16 H -0.28 -11.59 7.11 99.48 0.71 -10.89 15 17 H -0.25 -11.67 6.77 99.48 0.67 -11.00 15 18 C -0.48 -23.03 8.07 67.39 0.54 -22.48 15 19 S 0.11 4.45 22.20 -56.49 -1.25 3.20 15 20 C -0.12 -4.68 6.29 23.10 0.15 -4.53 15 21 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.06 1.57 7.55 -2.39 -0.02 1.55 15 23 H 0.09 1.74 8.07 -2.39 -0.02 1.72 15 24 H 0.15 3.90 7.64 -2.91 -0.02 3.87 15 25 H 0.15 2.48 8.06 -2.91 -0.02 2.46 15 26 H 0.14 4.68 7.88 -2.91 -0.02 4.66 15 27 H 0.30 14.01 8.30 -92.71 -0.77 13.24 15 28 H 0.13 6.26 4.35 -2.91 -0.01 6.24 15 Total: -1.00 -59.98 258.73 4.63 -55.35 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.11 Total: 6.46 kcal Atomic # 6 Polarization: -53.53 SS G_CDS: 2.83 Total: -50.70 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.30 Total: -43.40 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.05 Total: -15.60 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.68 Total: 44.69 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -1.25 Total: 3.20 kcal Total: -59.98 4.63 -55.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396334109.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.347 kcal (2) G-P(sol) polarization free energy of solvation -59.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds