Wall clock time and date at job start Mon Mar 30 2020 05:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35918 * 119.47918 * 2 1 4 4 C 1.40685 * 120.54470 * 179.78654 * 3 2 1 5 5 C 1.40132 * 120.24200 * 180.25272 * 4 3 2 6 6 H 1.08003 * 120.00291 * 207.81659 * 5 4 3 7 7 C 1.40443 * 119.99939 * 27.80563 * 5 4 3 8 8 N 1.30553 * 120.00012 * 13.30016 * 7 5 4 9 9 Si 1.86807 * 120.00315 * 193.29911 * 7 5 4 10 10 H 1.48497 * 109.47013 * 60.00220 * 9 7 5 11 11 H 1.48497 * 109.47064 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47018 * 300.00326 * 9 7 5 13 13 C 1.47930 * 119.52549 * 0.44815 * 4 3 2 14 14 C 1.39972 * 129.27649 * 179.83644 * 13 4 3 15 15 C 1.32750 * 115.81580 * 179.97438 * 14 13 4 16 16 S 1.75533 * 110.63527 * 359.97438 * 15 14 13 17 17 C 1.39621 * 118.03788 * 359.80535 * 13 4 3 18 18 C 1.40029 * 119.47323 * 180.27395 * 2 1 3 19 19 C 1.46514 * 119.51278 * 359.97438 * 18 2 1 20 20 O 1.21359 * 120.00039 * 354.48502 * 19 18 2 21 21 H 1.09003 * 109.47346 * 262.19018 * 1 2 3 22 22 H 1.08997 * 109.47457 * 142.18428 * 1 2 3 23 23 H 1.09000 * 109.46990 * 22.18525 * 1 2 3 24 24 H 1.08002 * 119.72366 * 0.02562 * 3 2 1 25 25 H 0.97004 * 120.00069 * 179.97438 * 8 7 5 26 26 H 1.07997 * 122.09405 * 359.97438 * 14 13 4 27 27 H 1.07995 * 124.68625 * 179.97438 * 15 14 13 28 28 H 1.08000 * 120.00383 * 174.48972 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1758 1.1832 0.0000 4 6 3.5824 1.2094 0.0045 5 6 4.2656 2.4329 0.0098 6 1 5.2525 2.5023 -0.4233 7 6 3.6667 3.5690 0.5782 8 7 2.6034 3.4419 1.3249 9 14 4.3917 5.2621 0.2659 10 1 4.3823 5.5433 -1.1922 11 1 3.5811 6.2858 0.9731 12 1 5.7883 5.3031 0.7689 13 6 4.3353 -0.0640 -0.0008 14 6 5.7190 -0.2754 -0.0008 15 6 6.1100 -1.5439 -0.0058 16 16 4.7224 -2.6190 -0.0103 17 6 3.6085 -1.2561 -0.0060 18 6 2.1959 -1.2191 -0.0058 19 6 1.4410 -2.4747 -0.0113 20 8 0.2318 -2.4562 0.0903 21 1 -0.3634 -0.1396 1.0181 22 1 -0.3634 -0.8118 -0.6301 23 1 -0.3633 0.9516 -0.3880 24 1 1.6229 2.1109 0.0004 25 1 2.1900 4.2266 1.7179 26 1 6.4243 0.5424 0.0029 27 1 7.1397 -1.8697 -0.0070 28 1 1.9606 -3.4168 -0.1056 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396334476.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:52 Heat of formation + Delta-G solvation = -7.903686 kcal Electronic energy + Delta-G solvation = -14989.209987 eV Core-core repulsion = 12481.981320 eV Total energy + Delta-G solvation = -2507.228667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.80790 -37.33290 -34.86246 -34.00577 -30.41569 -29.96951 -26.34302 -25.60827 -23.02806 -21.56671 -20.62498 -18.73065 -17.75884 -16.68856 -15.45878 -15.12696 -14.56751 -14.09584 -13.68414 -13.59123 -13.15442 -12.77269 -12.37318 -12.06521 -11.96149 -11.65932 -11.52902 -11.31185 -11.00772 -10.95662 -10.56763 -10.16078 -9.96662 -9.76829 -9.50502 -8.42413 -8.35638 -7.45225 -7.25135 -6.96865 -4.85124 1.80218 1.94664 2.47184 2.74894 2.78604 2.80960 2.89753 3.34684 3.50782 3.64495 4.25673 5.22078 5.35441 5.73888 6.03177 6.07239 6.27565 6.34923 6.47298 6.58036 6.62432 6.77487 6.89107 6.92310 7.05054 7.13111 7.46410 7.52440 7.69349 7.82780 8.11970 8.25936 8.45786 8.57599 9.52499 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022068 B = 0.009299 C = 0.006668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.496262 B = 3010.480641 C = 4198.284888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.030 3.970 3 C -0.207 4.207 4 C 0.170 3.830 5 C -0.400 4.400 6 H 0.093 0.907 7 C 0.067 3.933 8 N -0.742 5.742 9 Si 0.924 3.076 10 H -0.256 1.256 11 H -0.271 1.271 12 H -0.258 1.258 13 C -0.200 4.200 14 C -0.057 4.057 15 C -0.278 4.278 16 S 0.015 5.985 17 C -0.023 4.023 18 C -0.312 4.312 19 C 0.377 3.623 20 O -0.510 6.510 21 H 0.061 0.939 22 H 0.081 0.919 23 H 0.044 0.956 24 H 0.126 0.874 25 H 0.296 0.704 26 H 0.127 0.873 27 H 0.148 0.852 28 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.387 -0.304 -1.465 3.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.027 3.973 3 C -0.228 4.228 4 C 0.164 3.836 5 C -0.425 4.425 6 H 0.111 0.889 7 C -0.159 4.159 8 N -0.362 5.362 9 Si 0.746 3.254 10 H -0.180 1.180 11 H -0.196 1.196 12 H -0.182 1.182 13 C -0.207 4.207 14 C -0.087 4.087 15 C -0.410 4.410 16 S 0.276 5.724 17 C -0.139 4.139 18 C -0.321 4.321 19 C 0.245 3.755 20 O -0.392 6.392 21 H 0.080 0.920 22 H 0.099 0.901 23 H 0.063 0.937 24 H 0.144 0.856 25 H 0.107 0.893 26 H 0.144 0.856 27 H 0.166 0.834 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.564 -1.728 -1.253 3.336 hybrid contribution 0.805 2.237 0.075 2.378 sum 3.369 0.509 -1.178 3.605 Atomic orbital electron populations 1.20993 0.92406 1.01072 1.02138 1.19269 0.94673 0.91887 0.91435 1.20625 0.93443 0.96627 1.12072 1.18586 0.91642 0.89546 0.83829 1.19925 1.02691 0.92415 1.27499 0.88854 1.26335 0.94193 1.02643 0.92724 1.69693 1.15026 1.34081 1.17413 0.86063 0.80238 0.78614 0.80449 1.18014 1.19567 1.18217 1.19131 0.91707 0.92959 1.16871 1.19695 0.94946 0.95913 0.98097 1.24562 1.00377 0.95850 1.20254 1.83476 0.97900 1.10507 1.80519 1.22530 0.96110 0.94714 1.00527 1.18865 0.89814 0.94802 1.28575 1.23243 0.88694 0.91988 0.71589 1.90366 1.17428 1.90212 1.41232 0.92015 0.90073 0.93725 0.85617 0.89254 0.85562 0.83443 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.32 8.60 36.00 0.31 -2.01 15 2 C 0.03 0.72 5.86 -104.78 -0.61 0.10 15 3 C -0.21 -5.07 8.14 -39.49 -0.32 -5.39 15 4 C 0.17 4.17 5.74 -104.29 -0.60 3.57 15 5 C -0.40 -9.18 8.80 -38.04 -0.33 -9.52 15 6 H 0.09 1.99 7.57 -52.48 -0.40 1.59 15 7 C 0.07 1.43 5.20 -17.26 -0.09 1.34 15 8 N -0.74 -16.63 10.89 55.57 0.60 -16.02 15 9 Si 0.92 15.76 29.58 -169.99 -5.03 10.73 15 10 H -0.26 -4.35 7.11 56.52 0.40 -3.95 15 11 H -0.27 -4.51 7.11 56.52 0.40 -4.11 15 12 H -0.26 -4.35 7.11 56.52 0.40 -3.95 15 13 C -0.20 -4.70 6.02 -104.76 -0.63 -5.33 15 14 C -0.06 -1.17 9.76 -40.81 -0.40 -1.57 15 15 C -0.28 -5.13 11.12 28.86 0.32 -4.81 15 16 S 0.02 0.29 22.71 -107.50 -2.44 -2.16 15 17 C -0.02 -0.52 6.36 -37.90 -0.24 -0.76 15 18 C -0.31 -7.25 5.90 -104.73 -0.62 -7.87 15 19 C 0.38 8.04 11.20 34.07 0.38 8.42 15 20 O -0.51 -11.62 13.98 5.49 0.08 -11.55 15 21 H 0.06 1.30 8.14 -51.93 -0.42 0.87 15 22 H 0.08 1.73 5.80 -51.93 -0.30 1.43 15 23 H 0.04 0.86 7.97 -51.93 -0.41 0.45 15 24 H 0.13 3.09 6.13 -52.49 -0.32 2.77 15 25 H 0.30 5.91 8.29 -40.82 -0.34 5.57 15 26 H 0.13 2.36 7.77 -52.49 -0.41 1.95 15 27 H 0.15 2.26 8.06 -52.49 -0.42 1.84 15 28 H 0.06 1.18 7.67 -52.49 -0.40 0.78 15 LS Contribution 258.56 15.07 3.90 3.90 Total: -1.00 -25.74 258.56 -7.95 -33.69 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -2.22 Total: 5.24 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -2.83 Total: -23.83 kcal Atomic # 7 Polarization: -16.63 SS G_CDS: 0.60 Total: -16.02 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 15.76 SS G_CDS: -5.03 Total: 10.73 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.44 Total: -2.16 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -25.74 -7.95 -33.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396334476.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.790 kcal (2) G-P(sol) polarization free energy of solvation -25.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds