Wall clock time and date at job start Mon Mar 30 2020 05:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35918 * 119.47918 * 2 1 4 4 C 1.40685 * 120.54470 * 179.78654 * 3 2 1 5 5 C 1.40132 * 120.24200 * 180.25272 * 4 3 2 6 6 H 1.08003 * 120.00291 * 207.81659 * 5 4 3 7 7 C 1.40443 * 119.99939 * 27.80563 * 5 4 3 8 8 N 1.30553 * 120.00012 * 13.30016 * 7 5 4 9 9 Si 1.86807 * 120.00315 * 193.29911 * 7 5 4 10 10 H 1.48497 * 109.47013 * 60.00220 * 9 7 5 11 11 H 1.48497 * 109.47064 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47018 * 300.00326 * 9 7 5 13 13 C 1.47930 * 119.52549 * 0.44815 * 4 3 2 14 14 C 1.39972 * 129.27649 * 179.83644 * 13 4 3 15 15 C 1.32750 * 115.81580 * 179.97438 * 14 13 4 16 16 S 1.75533 * 110.63527 * 359.97438 * 15 14 13 17 17 C 1.39621 * 118.03788 * 359.80535 * 13 4 3 18 18 C 1.40029 * 119.47323 * 180.27395 * 2 1 3 19 19 C 1.46514 * 119.51278 * 359.97438 * 18 2 1 20 20 O 1.21359 * 120.00039 * 354.48502 * 19 18 2 21 21 H 1.09003 * 109.47346 * 262.19018 * 1 2 3 22 22 H 1.08997 * 109.47457 * 142.18428 * 1 2 3 23 23 H 1.09000 * 109.46990 * 22.18525 * 1 2 3 24 24 H 1.08002 * 119.72366 * 0.02562 * 3 2 1 25 25 H 0.97004 * 120.00069 * 179.97438 * 8 7 5 26 26 H 1.07997 * 122.09405 * 359.97438 * 14 13 4 27 27 H 1.07995 * 124.68625 * 179.97438 * 15 14 13 28 28 H 1.08000 * 120.00383 * 174.48972 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1758 1.1832 0.0000 4 6 3.5824 1.2094 0.0045 5 6 4.2656 2.4329 0.0098 6 1 5.2525 2.5023 -0.4233 7 6 3.6667 3.5690 0.5782 8 7 2.6034 3.4419 1.3249 9 14 4.3917 5.2621 0.2659 10 1 4.3823 5.5433 -1.1922 11 1 3.5811 6.2858 0.9731 12 1 5.7883 5.3031 0.7689 13 6 4.3353 -0.0640 -0.0008 14 6 5.7190 -0.2754 -0.0008 15 6 6.1100 -1.5439 -0.0058 16 16 4.7224 -2.6190 -0.0103 17 6 3.6085 -1.2561 -0.0060 18 6 2.1959 -1.2191 -0.0058 19 6 1.4410 -2.4747 -0.0113 20 8 0.2318 -2.4562 0.0903 21 1 -0.3634 -0.1396 1.0181 22 1 -0.3634 -0.8118 -0.6301 23 1 -0.3633 0.9516 -0.3880 24 1 1.6229 2.1109 0.0004 25 1 2.1900 4.2266 1.7179 26 1 6.4243 0.5424 0.0029 27 1 7.1397 -1.8697 -0.0070 28 1 1.9606 -3.4168 -0.1056 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396334476.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:52 Heat of formation + Delta-G solvation = -19.951168 kcal Electronic energy + Delta-G solvation = -14989.732405 eV Core-core repulsion = 12481.981320 eV Total energy + Delta-G solvation = -2507.751085 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.50890 -39.02748 -36.51030 -35.69254 -32.13538 -31.64083 -28.06498 -27.28564 -24.68767 -23.24605 -22.30754 -20.38875 -19.44511 -18.33512 -17.03020 -16.75755 -16.25679 -15.72379 -15.39504 -15.17428 -14.77662 -14.37339 -14.04419 -13.69983 -13.66381 -13.32160 -13.03745 -12.87335 -12.66843 -12.41336 -12.12758 -11.78682 -11.60070 -11.38644 -11.15998 -10.11351 -10.04963 -9.11723 -8.90535 -8.58796 -6.58835 0.09458 0.29853 0.87533 1.31909 1.33771 1.38770 1.51551 1.68178 2.00045 2.08707 2.58896 3.46003 3.73368 4.22568 4.32506 4.44339 4.61318 4.76101 4.83843 4.89457 4.97456 5.08351 5.17143 5.21140 5.38109 5.45368 5.81276 5.83023 5.96786 6.06676 6.37667 6.52229 6.71769 6.88527 7.93933 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022068 B = 0.009299 C = 0.006668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.496262 B = 3010.480641 C = 4198.284888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.012 3.988 3 C -0.230 4.230 4 C 0.139 3.861 5 C -0.418 4.418 6 H 0.104 0.896 7 C 0.031 3.969 8 N -0.773 5.773 9 Si 0.998 3.002 10 H -0.254 1.254 11 H -0.264 1.264 12 H -0.251 1.251 13 C -0.220 4.220 14 C -0.084 4.084 15 C -0.255 4.255 16 S 0.067 5.933 17 C -0.054 4.054 18 C -0.337 4.337 19 C 0.381 3.619 20 O -0.528 6.528 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.054 0.946 24 H 0.114 0.886 25 H 0.305 0.695 26 H 0.140 0.860 27 H 0.188 0.812 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.255 -0.535 -1.623 5.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.009 3.991 3 C -0.251 4.251 4 C 0.133 3.867 5 C -0.442 4.442 6 H 0.121 0.879 7 C -0.192 4.192 8 N -0.394 5.394 9 Si 0.816 3.184 10 H -0.178 1.178 11 H -0.188 1.188 12 H -0.174 1.174 13 C -0.228 4.228 14 C -0.113 4.113 15 C -0.388 4.388 16 S 0.328 5.672 17 C -0.170 4.170 18 C -0.345 4.345 19 C 0.250 3.750 20 O -0.412 6.412 21 H 0.077 0.923 22 H 0.097 0.903 23 H 0.073 0.927 24 H 0.132 0.868 25 H 0.117 0.883 26 H 0.157 0.843 27 H 0.205 0.795 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.423 -1.988 -1.407 5.049 hybrid contribution 0.314 2.216 0.141 2.243 sum 4.737 0.228 -1.267 4.908 Atomic orbital electron populations 1.20903 0.91260 1.01514 1.01887 1.19606 0.95801 0.92277 0.91432 1.20598 0.93921 0.96470 1.14113 1.18966 0.92022 0.90977 0.84742 1.20265 1.03328 0.92881 1.27771 0.87854 1.27258 0.94199 1.06033 0.91726 1.69737 1.16084 1.35682 1.17894 0.84982 0.79615 0.73543 0.80258 1.17774 1.18762 1.17421 1.19524 0.93299 0.92954 1.16978 1.19817 0.93938 0.97418 1.00138 1.25120 1.02173 0.95021 1.16449 1.83228 0.96393 1.08255 1.79283 1.22861 0.96643 0.96609 1.00900 1.19158 0.90657 0.95368 1.29316 1.23506 0.88343 0.92446 0.70687 1.90353 1.18249 1.90462 1.42145 0.92304 0.90257 0.92719 0.86804 0.88339 0.84258 0.79510 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.33 8.60 71.24 0.61 -3.71 15 2 C 0.01 0.57 5.86 -19.97 -0.12 0.45 15 3 C -0.23 -11.76 8.14 22.33 0.18 -11.58 15 4 C 0.14 7.00 5.74 -19.65 -0.11 6.89 15 5 C -0.42 -19.45 8.80 23.27 0.20 -19.25 15 6 H 0.10 4.41 7.57 -2.91 -0.02 4.39 15 7 C 0.03 1.32 5.20 85.42 0.44 1.76 15 8 N -0.77 -35.36 10.89 21.91 0.24 -35.13 15 9 Si 1.00 31.58 29.58 68.60 2.03 33.61 15 10 H -0.25 -7.89 7.11 99.48 0.71 -7.18 15 11 H -0.26 -7.94 7.11 99.48 0.71 -7.23 15 12 H -0.25 -7.59 7.11 99.48 0.71 -6.88 15 13 C -0.22 -10.37 6.02 -19.96 -0.12 -10.49 15 14 C -0.08 -3.32 9.76 21.51 0.21 -3.11 15 15 C -0.25 -8.56 11.12 66.64 0.74 -7.82 15 16 S 0.07 2.36 22.71 -56.49 -1.28 1.07 15 17 C -0.05 -2.43 6.36 23.36 0.15 -2.28 15 18 C -0.34 -15.81 5.90 -19.93 -0.12 -15.93 15 19 C 0.38 16.03 11.20 69.98 0.78 16.81 15 20 O -0.53 -24.01 13.98 -3.28 -0.05 -24.05 15 21 H 0.06 2.55 8.14 -2.39 -0.02 2.53 15 22 H 0.08 3.46 5.80 -2.39 -0.01 3.44 15 23 H 0.05 2.19 7.97 -2.39 -0.02 2.17 15 24 H 0.11 5.90 6.13 -2.91 -0.02 5.88 15 25 H 0.30 12.32 8.29 -92.71 -0.77 11.55 15 26 H 0.14 5.00 7.77 -2.91 -0.02 4.97 15 27 H 0.19 4.75 8.06 -2.91 -0.02 4.73 15 28 H 0.10 3.42 7.67 -2.91 -0.02 3.40 15 Total: -1.00 -55.96 258.56 4.99 -50.97 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 1.19 Total: 21.77 kcal Atomic # 6 Polarization: -51.11 SS G_CDS: 2.86 Total: -48.25 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.24 Total: -35.13 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.05 kcal Atomic # 14 Polarization: 31.58 SS G_CDS: 2.03 Total: 33.61 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -1.28 Total: 1.07 kcal Total: -55.96 4.99 -50.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396334476.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.022 kcal (2) G-P(sol) polarization free energy of solvation -55.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds