Wall clock time and date at job start Mon Mar 30 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36860 * 122.49070 * 2 1 4 4 C 1.39925 * 124.79097 * 359.97438 * 3 2 1 5 5 H 1.08000 * 119.99440 * 0.02562 * 4 3 2 6 6 C 1.40189 * 119.99740 * 179.72580 * 4 3 2 7 7 N 1.30748 * 120.00125 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99541 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47213 * 90.00380 * 8 6 4 10 10 H 1.48504 * 109.47159 * 210.00039 * 8 6 4 11 11 H 1.48506 * 109.47517 * 330.00134 * 8 6 4 12 12 S 1.75434 * 110.42030 * 180.25139 * 3 2 1 13 13 C 1.76050 * 91.83406 * 359.69499 * 12 3 2 14 14 C 1.39989 * 130.05238 * 180.02562 * 13 12 3 15 15 C 1.36078 * 120.82480 * 180.25402 * 14 13 12 16 16 C 1.40598 * 120.22077 * 359.97438 * 15 14 13 17 17 C 1.46889 * 119.95157 * 180.02562 * 16 15 14 18 18 O 1.21289 * 120.00059 * 179.97438 * 17 16 15 19 19 C 1.38824 * 120.09913 * 0.02562 * 16 15 14 20 20 C 1.39932 * 122.49292 * 180.02562 * 2 1 3 21 21 H 1.08999 * 109.47298 * 89.97707 * 1 2 3 22 22 H 1.09005 * 109.46823 * 209.97863 * 1 2 3 23 23 H 1.09005 * 109.47159 * 329.97398 * 1 2 3 24 24 H 0.97009 * 119.99614 * 179.97438 * 7 6 4 25 25 H 1.07993 * 119.58719 * 0.28510 * 14 13 12 26 26 H 1.07994 * 119.88644 * 180.02562 * 15 14 13 27 27 H 1.08003 * 119.99631 * 359.97438 * 17 16 15 28 28 H 1.08010 * 119.96731 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2422 1.1544 0.0000 4 6 1.7018 2.4451 -0.0005 5 1 0.6305 2.5819 -0.0005 6 6 2.5510 3.5605 0.0053 7 7 3.8479 3.3947 0.0108 8 14 1.8295 5.2835 0.0039 9 1 1.6312 5.7383 1.4036 10 1 2.7603 6.2094 -0.6901 11 1 0.5235 5.2728 -0.7028 12 16 3.9577 0.7875 -0.0072 13 6 3.6449 -0.9449 -0.0008 14 6 4.5393 -2.0218 -0.0015 15 6 4.0859 -3.3048 -0.0010 16 6 2.7046 -3.5673 0.0009 17 6 2.2217 -4.9545 0.0021 18 8 1.0303 -5.1819 0.0042 19 6 1.7965 -2.5173 0.0017 20 6 2.2587 -1.1803 -0.0005 21 1 -0.3634 0.0004 -1.0276 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3634 0.8898 0.5143 24 1 4.4355 4.1666 0.0145 25 1 5.6024 -1.8320 -0.0021 26 1 4.7894 -4.1242 -0.0012 27 1 2.9276 -5.7720 0.0011 28 1 0.7359 -2.7213 0.0036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396334499.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:17 Heat of formation + Delta-G solvation = -28.113878 kcal Electronic energy + Delta-G solvation = -14627.000796 eV Core-core repulsion = 12118.895749 eV Total energy + Delta-G solvation = -2508.105047 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.04894 -37.65631 -35.33018 -33.57486 -30.29113 -29.45719 -27.71086 -25.47769 -23.60801 -21.76862 -20.30775 -18.66654 -17.60433 -16.32734 -15.86901 -15.48012 -14.56514 -14.16170 -13.77840 -13.77006 -13.00660 -12.90089 -12.76595 -12.20308 -11.85399 -11.73624 -11.66927 -11.57542 -10.86056 -10.52569 -10.33802 -10.28569 -9.93286 -9.37568 -9.33601 -9.13935 -8.52422 -7.55157 -7.27365 -6.49445 -4.73705 1.40173 1.99485 2.73732 2.79973 2.86135 3.05190 3.13552 3.50213 3.51141 3.72477 4.55360 4.77053 4.92774 5.55360 5.74426 5.92247 6.26514 6.30108 6.46758 6.55580 6.60337 6.74328 6.81813 6.99459 7.05175 7.11542 7.21252 7.46373 7.63081 7.79165 7.91405 7.94915 8.21688 8.35306 9.56541 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.042243 B = 0.006600 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.669829 B = 4241.273750 C = 4888.786352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.331 4.331 3 C 0.053 3.947 4 C -0.379 4.379 5 H 0.102 0.898 6 C 0.053 3.947 7 N -0.777 5.777 8 Si 0.938 3.062 9 H -0.263 1.263 10 H -0.271 1.271 11 H -0.256 1.256 12 S 0.151 5.849 13 C -0.242 4.242 14 C -0.067 4.067 15 C -0.150 4.150 16 C -0.194 4.194 17 C 0.386 3.614 18 O -0.483 6.483 19 C -0.069 4.069 20 C 0.004 3.996 21 H 0.033 0.967 22 H 0.036 0.964 23 H 0.047 0.953 24 H 0.302 0.698 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.004 -1.814 0.025 2.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.337 4.337 3 C -0.066 4.066 4 C -0.413 4.413 5 H 0.120 0.880 6 C -0.169 4.169 7 N -0.403 5.403 8 Si 0.761 3.239 9 H -0.187 1.187 10 H -0.195 1.195 11 H -0.179 1.179 12 S 0.414 5.586 13 C -0.358 4.358 14 C -0.089 4.089 15 C -0.171 4.171 16 C -0.198 4.198 17 C 0.247 3.753 18 O -0.359 6.359 19 C -0.089 4.089 20 C -0.005 4.005 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.115 0.885 25 H 0.124 0.876 26 H 0.130 0.870 27 H 0.107 0.893 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.896 -0.875 0.015 3.026 hybrid contribution -1.220 -0.076 0.009 1.222 sum 1.677 -0.951 0.024 1.928 Atomic orbital electron populations 1.19849 0.92185 0.99595 0.98983 1.18348 0.95064 0.90016 1.30299 1.21250 0.94258 0.95877 0.95231 1.19373 0.95865 0.88438 1.37590 0.87992 1.26338 0.94489 1.03718 0.92312 1.68587 1.04144 1.34852 1.32761 0.85753 0.80097 0.78211 0.79840 1.18736 1.19538 1.17912 1.84872 1.06437 0.90004 1.77238 1.24032 0.96751 1.02391 1.12581 1.19845 0.97435 0.91254 1.00363 1.20307 0.93526 0.95999 1.07277 1.20251 0.94556 0.94811 1.10165 1.23936 0.90139 0.91537 0.69661 1.90464 1.20768 1.87945 1.36740 1.21211 0.98431 0.90797 0.98500 1.17838 0.91849 0.92785 0.97988 0.94812 0.94530 0.93425 0.88458 0.87587 0.87003 0.89293 0.86703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.01 9.59 36.01 0.35 -0.67 15 2 C -0.33 -8.09 5.95 -104.49 -0.62 -8.72 15 3 C 0.05 1.33 6.11 -39.45 -0.24 1.09 15 4 C -0.38 -9.04 8.83 -38.22 -0.34 -9.37 15 5 H 0.10 2.31 6.66 -52.49 -0.35 1.96 15 6 C 0.05 1.16 5.50 -17.28 -0.10 1.07 15 7 N -0.78 -17.52 10.58 55.56 0.59 -16.93 15 8 Si 0.94 16.44 29.56 -169.99 -5.03 11.42 15 9 H -0.26 -4.56 7.11 56.52 0.40 -4.16 15 10 H -0.27 -4.62 7.11 56.52 0.40 -4.22 15 11 H -0.26 -4.45 7.11 56.52 0.40 -4.05 15 12 S 0.15 3.57 20.12 -107.50 -2.16 1.41 15 13 C -0.24 -5.59 6.49 -38.04 -0.25 -5.84 15 14 C -0.07 -1.32 9.98 -39.70 -0.40 -1.72 15 15 C -0.15 -2.67 9.72 -39.47 -0.38 -3.06 15 16 C -0.19 -3.71 5.85 -105.29 -0.62 -4.33 15 17 C 0.39 6.33 11.43 34.23 0.39 6.72 15 18 O -0.48 -9.49 17.12 5.55 0.10 -9.39 15 19 C -0.07 -1.52 9.23 -38.14 -0.35 -1.87 15 20 C 0.00 0.09 5.83 -107.14 -0.62 -0.54 15 21 H 0.03 0.69 8.14 -51.93 -0.42 0.26 15 22 H 0.04 0.73 7.32 -51.93 -0.38 0.35 15 23 H 0.05 0.97 6.89 -51.93 -0.36 0.61 15 24 H 0.30 6.08 8.29 -40.82 -0.34 5.74 15 25 H 0.11 1.85 8.06 -52.49 -0.42 1.42 15 26 H 0.11 1.55 8.06 -52.49 -0.42 1.13 15 27 H 0.09 1.05 8.06 -52.48 -0.42 0.63 15 28 H 0.12 2.49 6.94 -52.48 -0.36 2.13 15 LS Contribution 261.64 15.07 3.94 3.94 Total: -1.00 -26.96 261.64 -8.02 -34.98 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -2.28 Total: 1.81 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: -3.18 Total: -27.23 kcal Atomic # 7 Polarization: -17.52 SS G_CDS: 0.59 Total: -16.93 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.10 Total: -9.39 kcal Atomic # 14 Polarization: 16.44 SS G_CDS: -5.03 Total: 11.42 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -2.16 Total: 1.41 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -26.96 -8.02 -34.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396334499.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.866 kcal (2) G-P(sol) polarization free energy of solvation -26.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds