Wall clock time and date at job start Mon Mar 30 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36860 * 122.49070 * 2 1 4 4 C 1.39925 * 124.79097 * 359.97438 * 3 2 1 5 5 H 1.08000 * 119.99440 * 0.02562 * 4 3 2 6 6 C 1.40189 * 119.99740 * 179.72580 * 4 3 2 7 7 N 1.30748 * 120.00125 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99541 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47213 * 90.00380 * 8 6 4 10 10 H 1.48504 * 109.47159 * 210.00039 * 8 6 4 11 11 H 1.48506 * 109.47517 * 330.00134 * 8 6 4 12 12 S 1.75434 * 110.42030 * 180.25139 * 3 2 1 13 13 C 1.76050 * 91.83406 * 359.69499 * 12 3 2 14 14 C 1.39989 * 130.05238 * 180.02562 * 13 12 3 15 15 C 1.36078 * 120.82480 * 180.25402 * 14 13 12 16 16 C 1.40598 * 120.22077 * 359.97438 * 15 14 13 17 17 C 1.46889 * 119.95157 * 180.02562 * 16 15 14 18 18 O 1.21289 * 120.00059 * 179.97438 * 17 16 15 19 19 C 1.38824 * 120.09913 * 0.02562 * 16 15 14 20 20 C 1.39932 * 122.49292 * 180.02562 * 2 1 3 21 21 H 1.08999 * 109.47298 * 89.97707 * 1 2 3 22 22 H 1.09005 * 109.46823 * 209.97863 * 1 2 3 23 23 H 1.09005 * 109.47159 * 329.97398 * 1 2 3 24 24 H 0.97009 * 119.99614 * 179.97438 * 7 6 4 25 25 H 1.07993 * 119.58719 * 0.28510 * 14 13 12 26 26 H 1.07994 * 119.88644 * 180.02562 * 15 14 13 27 27 H 1.08003 * 119.99631 * 359.97438 * 17 16 15 28 28 H 1.08010 * 119.96731 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2422 1.1544 0.0000 4 6 1.7018 2.4451 -0.0005 5 1 0.6305 2.5819 -0.0005 6 6 2.5510 3.5605 0.0053 7 7 3.8479 3.3947 0.0108 8 14 1.8295 5.2835 0.0039 9 1 1.6312 5.7383 1.4036 10 1 2.7603 6.2094 -0.6901 11 1 0.5235 5.2728 -0.7028 12 16 3.9577 0.7875 -0.0072 13 6 3.6449 -0.9449 -0.0008 14 6 4.5393 -2.0218 -0.0015 15 6 4.0859 -3.3048 -0.0010 16 6 2.7046 -3.5673 0.0009 17 6 2.2217 -4.9545 0.0021 18 8 1.0303 -5.1819 0.0042 19 6 1.7965 -2.5173 0.0017 20 6 2.2587 -1.1803 -0.0005 21 1 -0.3634 0.0004 -1.0276 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3634 0.8898 0.5143 24 1 4.4355 4.1666 0.0145 25 1 5.6024 -1.8320 -0.0021 26 1 4.7894 -4.1242 -0.0012 27 1 2.9276 -5.7720 0.0011 28 1 0.7359 -2.7213 0.0036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396334499.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:16 Heat of formation + Delta-G solvation = -41.879979 kcal Electronic energy + Delta-G solvation = -14627.597739 eV Core-core repulsion = 12118.895749 eV Total energy + Delta-G solvation = -2508.701990 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.56113 -39.20886 -36.99916 -35.23694 -31.87761 -31.12914 -29.42834 -27.12655 -25.14414 -23.40670 -21.82475 -20.30415 -19.34070 -17.95895 -17.39459 -16.95998 -16.07931 -15.77261 -15.32882 -15.25206 -14.62468 -14.59031 -14.32805 -13.83823 -13.46376 -13.40146 -13.25070 -13.15781 -12.39679 -12.09226 -11.91425 -11.89635 -11.58788 -11.02834 -11.00484 -10.64332 -10.17801 -9.26492 -8.92561 -8.26097 -6.51007 -0.10734 0.34307 1.28382 1.34158 1.39764 1.51764 1.60446 1.86688 1.91852 2.12453 2.88331 3.23894 3.52906 4.07528 4.29833 4.60300 4.63319 4.69610 4.81791 4.87642 4.94653 5.02359 5.13344 5.33910 5.45845 5.49980 5.61859 5.76210 5.92062 6.10683 6.27846 6.47242 6.59384 6.62022 7.94621 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.042243 B = 0.006600 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.669829 B = 4241.273750 C = 4888.786352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.366 4.366 3 C 0.024 3.976 4 C -0.410 4.410 5 H 0.103 0.897 6 C 0.018 3.982 7 N -0.800 5.800 8 Si 1.009 2.991 9 H -0.257 1.257 10 H -0.259 1.259 11 H -0.255 1.255 12 S 0.129 5.871 13 C -0.260 4.260 14 C -0.080 4.080 15 C -0.123 4.123 16 C -0.196 4.196 17 C 0.398 3.602 18 O -0.517 6.517 19 C -0.098 4.098 20 C -0.023 4.023 21 H 0.035 0.965 22 H 0.040 0.960 23 H 0.049 0.951 24 H 0.312 0.688 25 H 0.132 0.868 26 H 0.169 0.831 27 H 0.162 0.838 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.224 -3.205 0.028 4.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.373 4.373 3 C -0.095 4.095 4 C -0.443 4.443 5 H 0.121 0.879 6 C -0.201 4.201 7 N -0.427 5.427 8 Si 0.828 3.172 9 H -0.182 1.182 10 H -0.183 1.183 11 H -0.178 1.178 12 S 0.392 5.608 13 C -0.376 4.376 14 C -0.102 4.102 15 C -0.144 4.144 16 C -0.199 4.199 17 C 0.261 3.739 18 O -0.395 6.395 19 C -0.118 4.118 20 C -0.031 4.031 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.126 0.874 25 H 0.150 0.850 26 H 0.187 0.813 27 H 0.178 0.822 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.125 -2.290 0.018 4.718 hybrid contribution -1.511 0.138 0.010 1.518 sum 2.613 -2.152 0.028 3.385 Atomic orbital electron populations 1.19779 0.91080 0.99807 0.99100 1.18770 0.96345 0.90531 1.31642 1.21591 0.94944 0.96734 0.96220 1.19652 0.96398 0.89066 1.39203 0.87894 1.27240 0.94616 1.07073 0.91129 1.68624 1.05187 1.36393 1.32473 0.84738 0.79342 0.73164 0.80004 1.18165 1.18321 1.17823 1.84596 1.06426 0.91473 1.78298 1.24322 0.97219 1.02633 1.13414 1.20300 0.98401 0.91330 1.00183 1.20903 0.93714 0.96664 1.03103 1.20859 0.95004 0.96046 1.08002 1.24665 0.90370 0.91300 0.67550 1.90478 1.22893 1.88032 1.38051 1.21308 0.98805 0.91092 1.00602 1.18099 0.92489 0.93513 0.99028 0.94669 0.94086 0.93248 0.87440 0.85034 0.81321 0.82236 0.87749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.75 9.59 71.24 0.68 -1.06 15 2 C -0.37 -18.79 5.95 -19.78 -0.12 -18.90 15 3 C 0.02 1.26 6.11 22.36 0.14 1.40 15 4 C -0.41 -20.35 8.83 23.15 0.20 -20.15 15 5 H 0.10 4.87 6.66 -2.91 -0.02 4.85 15 6 C 0.02 0.81 5.50 85.33 0.47 1.28 15 7 N -0.80 -36.76 10.58 21.87 0.23 -36.53 15 8 Si 1.01 33.56 29.56 68.60 2.03 35.58 15 9 H -0.26 -8.29 7.11 99.48 0.71 -7.58 15 10 H -0.26 -8.07 7.11 99.48 0.71 -7.36 15 11 H -0.25 -8.35 7.11 99.48 0.71 -7.64 15 12 S 0.13 6.33 20.12 -56.49 -1.14 5.19 15 13 C -0.26 -12.14 6.49 23.27 0.15 -11.99 15 14 C -0.08 -2.99 9.98 22.19 0.22 -2.76 15 15 C -0.12 -3.84 9.72 22.34 0.22 -3.62 15 16 C -0.20 -6.92 5.85 -20.30 -0.12 -7.03 15 17 C 0.40 11.32 11.43 70.09 0.80 12.12 15 18 O -0.52 -19.07 17.12 -3.06 -0.05 -19.12 15 19 C -0.10 -4.31 9.23 23.21 0.21 -4.09 15 20 C -0.02 -1.15 5.83 -21.50 -0.13 -1.28 15 21 H 0.03 1.51 8.14 -2.39 -0.02 1.49 15 22 H 0.04 1.73 7.32 -2.38 -0.02 1.71 15 23 H 0.05 2.12 6.89 -2.38 -0.02 2.11 15 24 H 0.31 12.63 8.29 -92.70 -0.77 11.86 15 25 H 0.13 4.18 8.06 -2.91 -0.02 4.16 15 26 H 0.17 3.38 8.06 -2.91 -0.02 3.36 15 27 H 0.16 2.52 8.06 -2.91 -0.02 2.50 15 28 H 0.10 4.67 6.94 -2.91 -0.02 4.65 15 Total: -1.00 -61.87 261.64 5.00 -56.88 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 1.19 Total: 14.10 kcal Atomic # 6 Polarization: -58.84 SS G_CDS: 2.74 Total: -56.10 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.23 Total: -36.53 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.05 Total: -19.12 kcal Atomic # 14 Polarization: 33.56 SS G_CDS: 2.03 Total: 35.58 kcal Atomic # 16 Polarization: 6.33 SS G_CDS: -1.14 Total: 5.19 kcal Total: -61.87 5.00 -56.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396334499.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.996 kcal (2) G-P(sol) polarization free energy of solvation -61.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds