Wall clock time and date at job start Mon Mar 30 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40040 * 119.98485 * 2 1 4 4 C 1.46723 * 129.46324 * 0.59995 * 3 2 1 5 5 C 1.40720 * 123.29699 * 359.33054 * 4 3 2 6 6 H 1.08010 * 120.00073 * 35.43687 * 5 4 3 7 7 C 1.39786 * 120.00256 * 215.43985 * 5 4 3 8 8 N 1.31029 * 119.99865 * 355.33278 * 7 5 4 9 9 Si 1.86800 * 120.00489 * 175.33559 * 7 5 4 10 10 H 1.48501 * 109.47000 * 59.99597 * 9 7 5 11 11 H 1.48498 * 109.47253 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46751 * 299.99872 * 9 7 5 13 13 C 1.36400 * 113.40068 * 179.59156 * 4 3 2 14 14 S 1.69949 * 112.04353 * 359.77387 * 13 4 3 15 15 C 1.39710 * 119.35240 * 179.73102 * 3 2 1 16 16 C 1.40198 * 119.83993 * 0.51791 * 15 3 2 17 17 C 1.36049 * 120.74665 * 359.77042 * 16 15 3 18 18 C 1.39303 * 119.97927 * 180.27123 * 2 1 3 19 19 C 1.46843 * 120.06458 * 359.97438 * 18 2 1 20 20 O 1.21295 * 120.00359 * 4.25415 * 19 18 2 21 21 H 1.08996 * 109.47007 * 263.23750 * 1 2 3 22 22 H 1.08999 * 109.46442 * 23.24048 * 1 2 3 23 23 H 1.08996 * 109.46808 * 143.23231 * 1 2 3 24 24 H 0.96998 * 120.00013 * 180.02562 * 8 7 5 25 25 H 1.08007 * 123.97959 * 179.74171 * 13 4 3 26 26 H 1.08007 * 119.61933 * 179.74875 * 16 15 3 27 27 H 1.08008 * 119.92214 * 179.97438 * 17 16 15 28 28 H 1.08003 * 119.99939 * 184.24960 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.2130 0.0000 4 6 1.6919 2.5868 0.0119 5 6 0.3193 2.8973 0.0122 6 1 -0.3766 2.2681 0.5474 7 6 -0.1435 4.0200 -0.6802 8 7 0.7089 4.8340 -1.2527 9 14 -1.9770 4.3600 -0.7892 10 1 -2.5315 4.5279 0.5782 11 1 -2.2047 5.6011 -1.5722 12 1 -2.6526 3.2207 -1.4608 13 6 2.6739 3.5334 0.0168 14 16 4.2263 2.8420 0.0140 15 6 3.6039 1.1976 0.0057 16 6 4.2880 -0.0261 0.0004 17 6 3.6069 -1.2038 -0.0057 18 6 2.2031 -1.2066 -0.0057 19 6 1.4698 -2.4789 -0.0112 20 8 0.2594 -2.4810 -0.0886 21 1 -0.3633 -0.1210 1.0205 22 1 -0.3632 0.9443 -0.4055 23 1 -0.3633 -0.8232 -0.6151 24 1 0.3878 5.6132 -1.7328 25 1 2.4868 4.5972 0.0215 26 1 5.3681 -0.0339 0.0007 27 1 4.1475 -2.1389 -0.0101 28 1 2.0084 -3.4128 0.0537 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396334547.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:04 Heat of formation + Delta-G solvation = 0.877574 kcal Electronic energy + Delta-G solvation = -15057.281758 eV Core-core repulsion = 12550.433875 eV Total energy + Delta-G solvation = -2506.847883 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.52356 -37.77558 -34.98884 -32.37984 -31.94344 -28.91258 -27.14024 -25.25791 -23.80474 -21.87997 -20.42093 -19.35618 -17.10233 -16.44323 -15.74648 -15.24410 -14.97838 -14.09877 -14.04132 -13.93700 -12.99608 -12.78655 -12.63795 -11.97595 -11.82207 -11.60092 -11.41614 -11.31648 -11.05835 -10.72794 -10.45889 -10.18490 -9.91629 -9.54920 -9.11047 -8.77624 -8.40736 -7.50326 -6.69197 -6.66641 -4.40355 1.17706 1.86070 2.68764 2.83669 3.00844 3.08054 3.10904 3.64059 3.73557 3.98657 4.44220 4.68675 5.12111 5.30394 5.46301 5.73022 5.98387 6.00679 6.21313 6.45282 6.50775 6.65490 6.78979 6.94980 7.04736 7.18486 7.22273 7.48276 7.65114 7.91469 7.95055 8.40372 8.72342 8.84308 10.29832 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.010295 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.449668 B = 2719.220099 C = 4043.650497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.045 3.955 3 C -0.086 4.086 4 C 0.085 3.915 5 C -0.445 4.445 6 H 0.087 0.913 7 C 0.068 3.932 8 N -0.809 5.809 9 Si 0.912 3.088 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.265 1.265 13 C -0.336 4.336 14 S 0.060 5.940 15 C -0.120 4.120 16 C -0.118 4.118 17 C -0.076 4.076 18 C -0.238 4.238 19 C 0.384 3.616 20 O -0.471 6.471 21 H 0.065 0.935 22 H 0.101 0.899 23 H 0.087 0.913 24 H 0.277 0.723 25 H 0.162 0.838 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.760 -7.183 1.363 8.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.043 3.957 3 C -0.097 4.097 4 C 0.077 3.923 5 C -0.478 4.478 6 H 0.105 0.895 7 C -0.147 4.147 8 N -0.436 5.436 9 Si 0.737 3.263 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.189 1.189 13 C -0.472 4.472 14 S 0.326 5.674 15 C -0.237 4.237 16 C -0.141 4.141 17 C -0.097 4.097 18 C -0.243 4.243 19 C 0.245 3.755 20 O -0.348 6.348 21 H 0.084 0.916 22 H 0.119 0.881 23 H 0.105 0.895 24 H 0.088 0.912 25 H 0.180 0.820 26 H 0.134 0.866 27 H 0.140 0.860 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.529 -6.158 1.186 7.736 hybrid contribution -1.909 -0.159 -0.226 1.929 sum 2.620 -6.317 0.960 6.906 Atomic orbital electron populations 1.21673 0.90759 1.05894 1.02484 1.20093 0.96257 0.90125 0.89215 1.19711 0.91540 0.94942 1.03508 1.17278 0.94531 0.86131 0.94359 1.19062 0.91871 1.08365 1.28530 0.89542 1.25790 0.99950 0.94967 0.94036 1.69815 1.35807 1.11145 1.26851 0.86283 0.82252 0.78465 0.79279 1.18979 1.20433 1.18917 1.24530 0.91907 1.03673 1.27087 1.81932 1.12445 0.94631 1.78422 1.23056 0.97206 0.98124 1.05284 1.19971 0.98721 0.90320 1.05121 1.20545 0.92691 0.97254 0.99238 1.20277 0.94397 0.94978 1.14675 1.23723 0.88992 0.92207 0.70540 1.90432 1.17543 1.90218 1.36566 0.91640 0.88102 0.89496 0.91202 0.82047 0.86646 0.86007 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 7.96 36.01 0.29 -2.88 15 2 C 0.05 0.97 5.97 -103.55 -0.62 0.35 15 3 C -0.09 -2.04 5.98 -105.25 -0.63 -2.67 15 4 C 0.09 2.22 5.61 -106.20 -0.60 1.63 15 5 C -0.45 -11.52 7.20 -38.07 -0.27 -11.80 15 6 H 0.09 2.13 5.79 -52.48 -0.30 1.83 15 7 C 0.07 1.70 5.45 -17.32 -0.09 1.61 15 8 N -0.81 -21.07 10.98 55.54 0.61 -20.46 15 9 Si 0.91 18.99 29.56 -169.99 -5.03 13.97 15 10 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 11 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 12 H -0.26 -5.46 7.11 56.52 0.40 -5.06 15 13 C -0.34 -8.56 9.48 30.07 0.28 -8.28 15 14 S 0.06 1.28 22.96 -107.50 -2.47 -1.19 15 15 C -0.12 -2.58 6.46 -38.30 -0.25 -2.83 15 16 C -0.12 -2.08 9.99 -39.63 -0.40 -2.47 15 17 C -0.08 -1.19 9.72 -39.56 -0.38 -1.58 15 18 C -0.24 -4.24 5.86 -105.21 -0.62 -4.86 15 19 C 0.38 5.83 11.41 34.21 0.39 6.22 15 20 O -0.47 -8.60 13.98 5.54 0.08 -8.52 15 21 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 22 H 0.10 2.25 4.59 -51.93 -0.24 2.02 15 23 H 0.09 1.76 5.51 -51.93 -0.29 1.47 15 24 H 0.28 6.68 8.30 -40.82 -0.34 6.34 15 25 H 0.16 4.36 6.61 -52.48 -0.35 4.01 15 26 H 0.12 1.70 8.06 -52.48 -0.42 1.28 15 27 H 0.12 1.38 8.06 -52.48 -0.42 0.96 15 28 H 0.09 0.94 8.06 -52.48 -0.42 0.51 15 LS Contribution 253.02 15.07 3.81 3.81 Total: -1.00 -28.16 253.02 -7.89 -36.05 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -2.00 Total: 3.90 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: -2.89 Total: -27.56 kcal Atomic # 7 Polarization: -21.07 SS G_CDS: 0.61 Total: -20.46 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.08 Total: -8.52 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.97 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.47 Total: -1.19 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.16 -7.89 -36.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396334547.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.928 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds