Wall clock time and date at job start Mon Mar 30 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35386 * 119.63372 * 2 1 4 4 C 1.40616 * 120.47463 * 179.97438 * 3 2 1 5 5 C 1.46785 * 120.07814 * 179.72495 * 4 3 2 6 6 O 1.21319 * 120.00201 * 180.02562 * 5 4 3 7 7 C 1.39520 * 119.84627 * 359.97438 * 4 3 2 8 8 C 1.39124 * 120.14860 * 0.02693 * 7 4 3 9 9 S 1.76012 * 130.10482 * 179.97438 * 8 7 4 10 10 C 1.75450 * 91.76279 * 179.97438 * 9 8 7 11 11 C 1.39761 * 124.83766 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99849 * 173.28890 * 11 10 9 13 13 C 1.40411 * 120.00138 * 353.28179 * 11 10 9 14 14 N 1.30609 * 120.00275 * 6.58244 * 13 11 10 15 15 Si 1.86801 * 120.00130 * 186.57447 * 13 11 10 16 16 H 1.48500 * 109.47063 * 94.99206 * 15 13 11 17 17 H 1.48505 * 109.47506 * 214.98856 * 15 13 11 18 18 H 1.48499 * 109.47430 * 334.99148 * 15 13 11 19 19 C 1.37203 * 110.32607 * 359.97438 * 10 9 8 20 20 C 1.39424 * 115.08967 * 0.02562 * 19 10 9 21 21 H 1.08997 * 109.46692 * 89.99782 * 1 2 3 22 22 H 1.08995 * 109.46934 * 210.00255 * 1 2 3 23 23 H 1.09007 * 109.46904 * 329.99824 * 1 2 3 24 24 H 1.08003 * 119.75927 * 0.02562 * 3 2 1 25 25 H 1.08000 * 120.00186 * 359.97438 * 5 4 3 26 26 H 1.08005 * 119.93013 * 179.97438 * 7 4 3 27 27 H 0.96996 * 120.00606 * 179.97438 * 14 13 11 28 28 H 1.07997 * 122.45396 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1764 1.1768 0.0000 4 6 3.5824 1.1974 0.0005 5 6 4.2994 2.4783 -0.0056 6 8 5.5125 2.4945 -0.0056 7 6 4.2945 -0.0024 0.0016 8 6 3.6165 -1.2173 0.0016 9 16 4.2396 -2.8634 0.0022 10 6 2.6185 -3.5347 0.0025 11 6 2.3197 -4.9000 0.0035 12 1 1.2968 -5.2288 0.1129 13 6 3.3494 -5.8441 -0.1379 14 7 4.5962 -5.4551 -0.1411 15 14 2.9360 -7.6566 -0.3211 16 1 2.8941 -8.0115 -1.7624 17 1 3.9737 -8.4723 0.3595 18 1 1.6117 -7.9270 0.2939 19 6 1.6860 -2.5283 0.0027 20 6 2.2103 -1.2364 0.0021 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6265 2.1063 0.0004 25 1 3.7470 3.4063 -0.0109 26 1 5.3744 0.0119 0.0016 27 1 5.3075 -6.1074 -0.2384 28 1 0.6236 -2.7226 0.0033 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396335301.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:06 Heat of formation + Delta-G solvation = -31.349065 kcal Electronic energy + Delta-G solvation = -14518.009100 eV Core-core repulsion = 12009.763765 eV Total energy + Delta-G solvation = -2508.245335 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.93264 -37.61161 -35.15817 -33.28229 -31.86509 -29.49785 -26.77334 -25.63048 -23.25494 -22.01090 -20.04999 -19.00501 -17.94747 -16.33275 -15.64867 -15.15244 -14.77312 -14.24117 -13.89745 -13.65457 -13.01269 -12.89752 -12.50582 -12.29330 -12.09046 -11.76891 -11.60548 -11.56263 -11.30448 -10.77856 -10.52175 -10.39529 -9.92595 -9.48680 -9.22189 -9.05616 -8.42411 -7.54046 -7.40448 -6.51706 -4.89079 1.41797 2.33139 2.55208 2.72681 2.79929 2.96180 3.12472 3.42403 3.62999 3.69417 4.48717 4.91756 4.99904 5.56846 5.73464 5.92137 6.02134 6.20581 6.22923 6.42458 6.43409 6.51598 6.77217 6.88512 7.10197 7.15159 7.31141 7.37165 7.57838 7.67792 7.91839 8.11230 8.15870 8.17740 9.40538 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.035767 B = 0.006570 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.664175 B = 4260.458530 C = 5023.748831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.143 4.143 3 C -0.058 4.058 4 C -0.289 4.289 5 C 0.387 3.613 6 O -0.502 6.502 7 C 0.025 3.975 8 C -0.290 4.290 9 S 0.139 5.861 10 C 0.056 3.944 11 C -0.364 4.364 12 H 0.104 0.896 13 C 0.050 3.950 14 N -0.758 5.758 15 Si 0.942 3.058 16 H -0.261 1.261 17 H -0.269 1.269 18 H -0.254 1.254 19 C -0.356 4.356 20 C 0.053 3.947 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.108 0.892 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.306 0.694 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.808 1.147 -0.150 3.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.145 4.145 3 C -0.079 4.079 4 C -0.292 4.292 5 C 0.252 3.748 6 O -0.381 6.381 7 C 0.003 3.997 8 C -0.404 4.404 9 S 0.400 5.600 10 C -0.064 4.064 11 C -0.397 4.397 12 H 0.122 0.878 13 C -0.174 4.174 14 N -0.383 5.383 15 Si 0.764 3.236 16 H -0.186 1.186 17 H -0.193 1.193 18 H -0.177 1.177 19 C -0.380 4.380 20 C 0.044 3.956 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.126 0.874 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.119 0.881 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.531 0.458 -0.157 1.605 hybrid contribution -1.695 -0.138 -0.113 1.705 sum -3.226 0.321 -0.270 3.253 Atomic orbital electron populations 1.20552 0.92473 1.01355 1.00900 1.19224 0.94771 0.91887 1.08588 1.20201 0.92662 0.96502 0.98521 1.19993 0.94173 0.94463 1.20611 1.23599 0.88869 0.92279 0.70072 1.90448 1.17728 1.90868 1.39025 1.20470 0.98175 0.89870 0.91226 1.23527 0.97540 1.00868 1.18433 1.84872 1.06874 0.89742 1.78525 1.21589 0.94697 0.96475 0.93679 1.19541 0.96158 0.89040 1.34998 0.87793 1.26473 0.94060 1.04366 0.92524 1.68646 1.00970 1.38799 1.29847 0.85683 0.80166 0.77799 0.79972 1.18581 1.19311 1.17729 1.19688 0.98224 0.89843 1.30263 1.18033 0.91505 0.93003 0.93050 0.92692 0.92135 0.93008 0.87365 0.90150 0.87092 0.88071 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 9.78 36.01 0.35 -1.24 15 2 C -0.14 -2.91 5.91 -104.10 -0.62 -3.53 15 3 C -0.06 -1.09 9.29 -39.70 -0.37 -1.46 15 4 C -0.29 -5.79 5.87 -105.07 -0.62 -6.41 15 5 C 0.39 6.84 11.44 34.19 0.39 7.23 15 6 O -0.50 -10.50 17.14 5.52 0.09 -10.41 15 7 C 0.02 0.56 9.62 -38.78 -0.37 0.19 15 8 C -0.29 -6.96 6.45 -38.35 -0.25 -7.21 15 9 S 0.14 3.37 20.17 -107.50 -2.17 1.20 15 10 C 0.06 1.38 6.11 -39.39 -0.24 1.14 15 11 C -0.36 -8.41 9.26 -38.20 -0.35 -8.76 15 12 H 0.10 2.24 7.86 -52.48 -0.41 1.82 15 13 C 0.05 1.07 5.49 -17.25 -0.09 0.97 15 14 N -0.76 -16.76 10.62 55.57 0.59 -16.17 15 15 Si 0.94 15.72 29.57 -169.99 -5.03 10.69 15 16 H -0.26 -4.34 7.11 56.52 0.40 -3.94 15 17 H -0.27 -4.38 7.11 56.52 0.40 -3.98 15 18 H -0.25 -4.17 7.11 56.52 0.40 -3.77 15 19 C -0.36 -8.56 9.54 -39.52 -0.38 -8.94 15 20 C 0.05 1.24 5.82 -107.01 -0.62 0.62 15 21 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 22 H 0.06 1.02 7.09 -51.93 -0.37 0.65 15 23 H 0.05 0.72 8.07 -51.93 -0.42 0.31 15 24 H 0.11 1.61 8.06 -52.48 -0.42 1.18 15 25 H 0.08 1.07 8.06 -52.49 -0.42 0.65 15 26 H 0.11 2.46 7.62 -52.48 -0.40 2.06 15 27 H 0.31 5.99 8.29 -40.82 -0.34 5.65 15 28 H 0.11 2.51 7.31 -52.49 -0.38 2.12 15 LS Contribution 263.92 15.07 3.98 3.98 Total: -1.00 -26.84 263.92 -8.09 -34.93 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -2.39 Total: 3.18 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -3.17 Total: -27.40 kcal Atomic # 7 Polarization: -16.76 SS G_CDS: 0.59 Total: -16.17 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 15.72 SS G_CDS: -5.03 Total: 10.69 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -2.17 Total: 1.20 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.84 -8.09 -34.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396335301.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.580 kcal (2) G-P(sol) polarization free energy of solvation -26.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds