Wall clock time and date at job start Mon Mar 30 2020 05:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37812 * 119.73754 * 2 1 4 4 C 1.40446 * 120.73614 * 180.02562 * 3 2 1 5 5 C 1.46722 * 129.50108 * 179.97438 * 4 3 2 6 6 C 1.40766 * 123.28878 * 0.03456 * 5 4 3 7 7 H 1.08000 * 120.00123 * 339.17274 * 6 5 4 8 8 C 1.39786 * 119.99766 * 159.17784 * 6 5 4 9 9 N 1.31030 * 120.00186 * 344.87352 * 8 6 5 10 10 Si 1.86795 * 120.00022 * 164.87158 * 8 6 5 11 11 H 1.48506 * 109.47228 * 94.77383 * 10 8 6 12 12 H 1.48496 * 109.47224 * 214.77261 * 10 8 6 13 13 H 1.48502 * 109.47359 * 334.77162 * 10 8 6 14 14 C 1.36387 * 113.41414 * 180.02562 * 5 4 3 15 15 S 1.69976 * 111.96429 * 0.02562 * 14 5 4 16 16 C 1.39329 * 119.32411 * 359.97438 * 4 3 2 17 17 C 1.41471 * 119.49415 * 0.02562 * 16 4 3 18 18 C 1.46736 * 120.03163 * 179.97438 * 17 16 4 19 19 O 1.21323 * 119.99801 * 179.97438 * 18 17 16 20 20 C 1.38014 * 119.73523 * 180.02562 * 2 1 3 21 21 H 1.08999 * 109.47541 * 269.98169 * 1 2 3 22 22 H 1.09003 * 109.47037 * 29.98726 * 1 2 3 23 23 H 1.09008 * 109.46610 * 149.98131 * 1 2 3 24 24 H 1.07998 * 119.63463 * 0.02562 * 3 2 1 25 25 H 0.96990 * 120.00141 * 180.02562 * 9 8 6 26 26 H 1.07995 * 124.01642 * 179.97438 * 14 5 4 27 27 H 1.07996 * 120.00610 * 359.97438 * 18 17 16 28 28 H 1.08002 * 120.00872 * 359.96626 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1905 1.1966 0.0000 4 6 3.5948 1.2211 -0.0005 5 6 4.5082 2.3693 -0.0011 6 6 4.0683 3.7065 -0.0006 7 1 3.0689 3.9464 -0.3322 8 6 4.9252 4.7239 0.4292 9 7 6.0099 4.4266 1.1014 10 14 4.5239 6.5074 0.0452 11 1 3.8004 7.1103 1.1934 12 1 5.7827 7.2573 -0.1956 13 1 3.6693 6.5724 -1.1676 14 6 5.8250 2.0143 -0.0021 15 16 6.0285 0.3268 -0.0031 16 6 4.2982 0.0184 -0.0005 17 6 3.5869 -1.2045 -0.0005 18 6 4.3158 -2.4780 -0.0011 19 8 3.7053 -3.5264 -0.0006 20 6 2.1915 -1.1984 -0.0005 21 1 -0.3634 -0.0003 1.0276 22 1 -0.3633 0.8901 -0.5137 23 1 -0.3633 -0.8899 -0.5142 24 1 1.6403 2.1260 0.0004 25 1 6.6043 5.1325 1.3999 26 1 6.6414 2.7213 -0.0031 27 1 5.3958 -2.4822 -0.0019 28 1 1.6473 -2.1313 -0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396335356.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:03 Heat of formation + Delta-G solvation = -27.216238 kcal Electronic energy + Delta-G solvation = -14682.043586 eV Core-core repulsion = 12173.977464 eV Total energy + Delta-G solvation = -2508.066122 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.82901 -39.41098 -36.94222 -34.57884 -33.11655 -30.33911 -28.57624 -27.47227 -25.53326 -23.70588 -21.65444 -20.94230 -18.78933 -18.41157 -17.24423 -16.87878 -16.48259 -15.70828 -15.48315 -15.45915 -14.81710 -14.56949 -14.50969 -13.73992 -13.36365 -13.16595 -13.02397 -12.92110 -12.68322 -12.36347 -12.12720 -11.98117 -11.55912 -11.37397 -10.98840 -10.73497 -10.22530 -9.14721 -8.67705 -8.49995 -6.29295 -0.42449 0.21371 1.02668 1.18719 1.38112 1.41935 1.52447 1.88600 2.00464 2.21788 2.74475 3.31286 3.34502 3.92121 3.93890 4.20429 4.34013 4.41162 4.73115 4.76309 4.90289 5.06517 5.13163 5.19699 5.22211 5.30471 5.59394 5.65032 5.94440 6.01436 6.35960 6.48647 6.80344 6.91818 8.36411 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.007734 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.684990 B = 3619.460009 C = 4575.860654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.121 4.121 3 C -0.047 4.047 4 C -0.107 4.107 5 C 0.060 3.940 6 C -0.466 4.466 7 H 0.080 0.920 8 C 0.029 3.971 9 N -0.826 5.826 10 Si 0.984 3.016 11 H -0.263 1.263 12 H -0.271 1.271 13 H -0.257 1.257 14 C -0.400 4.400 15 S 0.091 5.909 16 C -0.117 4.117 17 C -0.185 4.185 18 C 0.398 3.602 19 O -0.492 6.492 20 C -0.048 4.048 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.129 0.871 25 H 0.285 0.715 26 H 0.137 0.863 27 H 0.123 0.877 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.899 -4.496 -1.679 7.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.124 4.124 3 C -0.067 4.067 4 C -0.117 4.117 5 C 0.052 3.948 6 C -0.498 4.498 7 H 0.098 0.902 8 C -0.185 4.185 9 N -0.453 5.453 10 Si 0.805 3.195 11 H -0.188 1.188 12 H -0.196 1.196 13 H -0.180 1.180 14 C -0.535 4.535 15 S 0.354 5.646 16 C -0.234 4.234 17 C -0.192 4.192 18 C 0.260 3.740 19 O -0.369 6.369 20 C -0.068 4.068 21 H 0.098 0.902 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.147 0.853 25 H 0.095 0.905 26 H 0.155 0.845 27 H 0.139 0.861 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.652 -5.736 -1.560 7.548 hybrid contribution -0.686 2.271 0.077 2.374 sum -5.338 -3.465 -1.483 6.535 Atomic orbital electron populations 1.20768 0.87866 1.03893 1.03293 1.19928 0.98131 0.91471 1.02891 1.21209 0.91565 0.98757 0.95132 1.19865 0.94942 0.92734 1.04141 1.17725 0.90186 0.92677 0.94255 1.19295 1.00689 0.90875 1.38965 0.90182 1.26706 0.94080 1.05757 0.91999 1.69937 1.12055 1.36731 1.26564 0.85158 0.78835 0.75770 0.79780 1.18767 1.19569 1.18016 1.24206 1.00507 0.96569 1.32264 1.81320 1.00135 1.02957 1.80141 1.23163 0.98916 0.96072 1.05201 1.20308 0.94913 0.92936 1.11074 1.24037 0.95735 0.85668 0.68599 1.90461 1.73883 1.35036 1.37505 1.21361 0.92103 0.98726 0.94586 0.90220 0.90723 0.89882 0.85270 0.90501 0.84550 0.86087 0.83230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.24 9.99 71.23 0.71 -1.53 15 2 C -0.12 -3.82 5.86 -20.02 -0.12 -3.94 15 3 C -0.05 -1.81 9.48 22.71 0.22 -1.60 15 4 C -0.11 -4.96 6.02 -20.26 -0.12 -5.08 15 5 C 0.06 3.18 5.69 -20.88 -0.12 3.06 15 6 C -0.47 -24.44 9.06 23.26 0.21 -24.23 15 7 H 0.08 3.95 7.65 -2.91 -0.02 3.93 15 8 C 0.03 1.43 5.31 85.19 0.45 1.88 15 9 N -0.83 -43.43 10.90 21.81 0.24 -43.19 15 10 Si 0.98 37.79 29.59 68.60 2.03 39.82 15 11 H -0.26 -9.68 7.11 99.48 0.71 -8.98 15 12 H -0.27 -10.09 7.11 99.48 0.71 -9.38 15 13 H -0.26 -9.56 7.11 99.48 0.71 -8.85 15 14 C -0.40 -20.92 9.51 67.39 0.64 -20.28 15 15 S 0.09 3.85 22.38 -56.49 -1.26 2.59 15 16 C -0.12 -4.94 6.34 23.33 0.15 -4.80 15 17 C -0.18 -6.65 5.90 -19.94 -0.12 -6.77 15 18 C 0.40 12.64 11.29 70.04 0.79 13.43 15 19 O -0.49 -17.07 17.14 -3.16 -0.05 -17.13 15 20 C -0.05 -1.55 9.21 22.53 0.21 -1.35 15 21 H 0.08 1.57 8.14 -2.39 -0.02 1.55 15 22 H 0.07 1.51 8.08 -2.39 -0.02 1.49 15 23 H 0.08 1.51 8.08 -2.38 -0.02 1.49 15 24 H 0.13 4.70 7.82 -2.91 -0.02 4.67 15 25 H 0.28 13.60 8.30 -92.72 -0.77 12.83 15 26 H 0.14 7.71 6.31 -2.91 -0.02 7.69 15 27 H 0.12 3.25 7.68 -2.91 -0.02 3.23 15 28 H 0.15 4.17 7.62 -2.91 -0.02 4.15 15 Total: -1.00 -60.32 264.67 5.04 -55.29 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.19 Total: 13.81 kcal Atomic # 6 Polarization: -54.09 SS G_CDS: 2.90 Total: -51.19 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.24 Total: -43.19 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.05 Total: -17.13 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.26 Total: 2.59 kcal Total: -60.32 5.04 -55.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396335356.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.069 kcal (2) G-P(sol) polarization free energy of solvation -60.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds