Wall clock time and date at job start Mon Mar 30 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31992 * 122.50526 * 2 1 4 4 S 1.75287 * 111.32781 * 179.97438 * 3 2 1 5 5 C 1.75926 * 92.14858 * 359.97438 * 4 3 2 6 6 C 1.39647 * 109.83169 * 0.02562 * 5 4 3 7 7 C 1.41583 * 119.67849 * 179.97438 * 6 5 4 8 8 C 1.36946 * 121.91201 * 359.97438 * 7 6 5 9 9 C 1.40029 * 120.57734 * 359.74934 * 8 7 6 10 10 C 1.46238 * 120.57004 * 180.28322 * 9 8 7 11 11 O 1.21400 * 119.99958 * 354.48617 * 10 9 8 12 12 C 1.42151 * 130.27651 * 180.02562 * 5 4 3 13 13 C 1.40163 * 120.46408 * 0.02562 * 12 5 4 14 14 H 1.07999 * 120.00488 * 221.75129 * 13 12 5 15 15 C 1.40477 * 119.99959 * 41.74736 * 13 12 5 16 16 N 1.30541 * 119.99804 * 24.00452 * 15 13 12 17 17 Si 1.86800 * 120.00377 * 204.00456 * 15 13 12 18 18 H 1.48498 * 109.47477 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47151 * 300.00389 * 17 15 13 20 20 H 1.48506 * 109.46827 * 60.00091 * 17 15 13 21 21 H 1.09002 * 109.46701 * 90.02666 * 1 2 3 22 22 H 1.08996 * 109.47546 * 210.02746 * 1 2 3 23 23 H 1.09001 * 109.47484 * 330.03068 * 1 2 3 24 24 H 1.08003 * 124.33705 * 359.97438 * 3 2 1 25 25 H 1.08005 * 119.03835 * 180.02562 * 7 6 5 26 26 H 1.08003 * 119.70869 * 180.02562 * 8 7 6 27 27 H 1.08001 * 119.99998 * 174.48565 * 10 9 8 28 28 H 0.97002 * 120.00249 * 5.61570 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2163 1.1131 0.0000 4 16 3.9359 0.7733 0.0007 5 6 3.6599 -0.9641 0.0018 6 6 2.2881 -1.2259 0.0010 7 6 1.8301 -2.5655 0.0011 8 6 2.6959 -3.6266 0.0015 9 6 4.0803 -3.4164 -0.0035 10 6 5.0046 -4.5496 -0.0093 11 8 4.5778 -5.6816 0.0912 12 6 4.5867 -2.0419 0.0033 13 6 5.9661 -1.7930 0.0047 14 1 6.6222 -2.3840 -0.6171 15 6 6.4952 -0.7746 0.8148 16 7 5.8461 -0.3822 1.8773 17 14 8.1276 0.0181 0.3719 18 1 8.4624 1.0576 1.3782 19 1 9.1923 -1.0170 0.3556 20 1 8.0255 0.6445 -0.9708 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3634 0.8902 0.5133 24 1 1.7916 2.1061 -0.0004 25 1 0.7670 -2.7561 0.0001 26 1 2.3074 -4.6344 0.0012 27 1 6.0670 -4.3794 -0.1030 28 1 5.0408 -0.8475 2.1531 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396335851.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:50 Heat of formation + Delta-G solvation = -20.068013 kcal Electronic energy + Delta-G solvation = -15061.555640 eV Core-core repulsion = 12553.799488 eV Total energy + Delta-G solvation = -2507.756152 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.57874 -37.36241 -35.36383 -33.63057 -30.04257 -29.45154 -27.35090 -25.36239 -23.68864 -21.38615 -20.32064 -19.04074 -17.73345 -16.42592 -15.71168 -14.81061 -14.39510 -14.21429 -13.76849 -13.64889 -13.25828 -12.98878 -12.72222 -12.29948 -12.06265 -11.83457 -11.65067 -11.46032 -10.89103 -10.64922 -10.57951 -10.05591 -9.99382 -9.71684 -9.13730 -8.64211 -8.43193 -7.74830 -7.51074 -6.64705 -4.92956 1.35904 2.42949 2.54723 2.69687 3.00071 3.06661 3.10303 3.20188 3.66749 3.76839 4.29413 5.02124 5.27669 5.53551 5.60829 5.78649 5.92094 5.95790 6.16967 6.20332 6.38617 6.47160 6.70251 6.90993 6.94168 7.08601 7.28456 7.39640 7.54998 7.62984 7.84448 8.17399 8.33226 8.67565 9.62718 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.013133 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.455912 B = 2131.516652 C = 3625.456733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.109 4.109 3 C -0.222 4.222 4 S 0.102 5.898 5 C -0.209 4.209 6 C -0.010 4.010 7 C -0.228 4.228 8 C -0.008 4.008 9 C -0.318 4.318 10 C 0.394 3.606 11 O -0.528 6.528 12 C 0.167 3.833 13 C -0.501 4.501 14 H 0.095 0.905 15 C 0.031 3.969 16 N -0.745 5.745 17 Si 1.059 2.941 18 H -0.267 1.267 19 H -0.270 1.270 20 H -0.268 1.268 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.150 0.850 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.351 4.818 -2.175 5.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.357 4.357 4 S 0.369 5.631 5 C -0.325 4.325 6 C -0.019 4.019 7 C -0.249 4.249 8 C -0.028 4.028 9 C -0.324 4.324 10 C 0.262 3.738 11 O -0.410 6.410 12 C 0.160 3.840 13 C -0.527 4.527 14 H 0.113 0.887 15 C -0.195 4.195 16 N -0.366 5.366 17 Si 0.881 3.119 18 H -0.192 1.192 19 H -0.195 1.195 20 H -0.193 1.193 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.168 0.832 25 H 0.117 0.883 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.229 6.477 -1.609 6.678 hybrid contribution -2.467 -1.844 -0.431 3.110 sum -2.697 4.633 -2.040 5.736 Atomic orbital electron populations 1.20427 0.90866 1.01943 1.01505 1.19721 0.96107 0.91627 1.04842 1.25074 0.99411 1.01141 1.10059 1.84026 1.01466 1.00151 1.77420 1.22834 0.95875 0.96020 1.17774 1.19040 0.91165 0.92997 0.98711 1.19983 0.97727 0.90079 1.17094 1.20619 0.92602 0.97211 0.92363 1.21191 0.93675 0.93293 1.24202 1.23238 0.94093 0.86620 0.69839 1.90397 1.82664 1.26329 1.41638 1.18034 0.91756 0.88178 0.86047 1.20670 0.92991 1.16236 1.22807 0.88692 1.27259 1.05647 0.93886 0.92726 1.70329 1.14490 1.34755 1.16985 0.83675 0.72925 0.77433 0.77873 1.19159 1.19487 1.19275 0.91902 0.91764 0.92285 0.83203 0.88318 0.87433 0.90209 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 10.00 36.01 0.36 -0.95 15 2 C -0.11 -2.09 5.97 -103.71 -0.62 -2.70 15 3 C -0.22 -4.13 10.76 28.82 0.31 -3.82 15 4 S 0.10 2.16 20.37 -107.50 -2.19 -0.03 15 5 C -0.21 -4.97 5.32 -37.56 -0.20 -5.17 15 6 C -0.01 -0.23 6.01 -105.27 -0.63 -0.86 15 7 C -0.23 -4.93 9.68 -38.78 -0.38 -5.31 15 8 C -0.01 -0.18 9.54 -39.38 -0.38 -0.56 15 9 C -0.32 -7.60 6.06 -102.69 -0.62 -8.22 15 10 C 0.39 8.96 11.03 33.94 0.37 9.33 15 11 O -0.53 -12.91 17.19 5.45 0.09 -12.81 15 12 C 0.17 4.07 5.05 -104.35 -0.53 3.54 15 13 C -0.50 -11.77 7.98 -38.02 -0.30 -12.07 15 14 H 0.10 2.11 7.31 -52.49 -0.38 1.73 15 15 C 0.03 0.71 4.15 -17.26 -0.07 0.64 15 16 N -0.75 -17.83 11.80 55.58 0.66 -17.17 15 17 Si 1.06 19.44 30.00 -169.99 -5.10 14.34 15 18 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 19 H -0.27 -4.66 7.11 56.52 0.40 -4.26 15 20 H -0.27 -4.76 7.11 56.52 0.40 -4.36 15 21 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 22 H 0.06 0.93 7.48 -51.93 -0.39 0.54 15 23 H 0.06 0.75 8.12 -51.93 -0.42 0.33 15 24 H 0.15 2.28 8.06 -52.48 -0.42 1.86 15 25 H 0.10 1.88 7.51 -52.48 -0.39 1.49 15 26 H 0.11 2.31 7.66 -52.48 -0.40 1.91 15 27 H 0.08 1.66 6.96 -52.49 -0.37 1.30 15 28 H 0.30 7.63 7.24 -40.82 -0.30 7.33 15 LS Contribution 260.71 15.07 3.93 3.93 Total: -1.00 -26.51 260.71 -7.58 -34.10 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -2.29 Total: 3.80 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -2.68 Total: -26.15 kcal Atomic # 7 Polarization: -17.83 SS G_CDS: 0.66 Total: -17.17 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.10 Total: 14.34 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.19 Total: -0.03 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.51 -7.58 -34.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396335851.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.031 kcal (2) G-P(sol) polarization free energy of solvation -26.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds