Wall clock time and date at job start Mon Mar 30 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31992 * 122.50526 * 2 1 4 4 S 1.75287 * 111.32781 * 179.97438 * 3 2 1 5 5 C 1.75926 * 92.14858 * 359.97438 * 4 3 2 6 6 C 1.39647 * 109.83169 * 0.02562 * 5 4 3 7 7 C 1.41583 * 119.67849 * 179.97438 * 6 5 4 8 8 C 1.36946 * 121.91201 * 359.97438 * 7 6 5 9 9 C 1.40029 * 120.57734 * 359.74934 * 8 7 6 10 10 C 1.46238 * 120.57004 * 180.28322 * 9 8 7 11 11 O 1.21400 * 119.99958 * 354.48617 * 10 9 8 12 12 C 1.42151 * 130.27651 * 180.02562 * 5 4 3 13 13 C 1.40163 * 120.46408 * 0.02562 * 12 5 4 14 14 H 1.07999 * 120.00488 * 221.75129 * 13 12 5 15 15 C 1.40477 * 119.99959 * 41.74736 * 13 12 5 16 16 N 1.30541 * 119.99804 * 24.00452 * 15 13 12 17 17 Si 1.86800 * 120.00377 * 204.00456 * 15 13 12 18 18 H 1.48498 * 109.47477 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47151 * 300.00389 * 17 15 13 20 20 H 1.48506 * 109.46827 * 60.00091 * 17 15 13 21 21 H 1.09002 * 109.46701 * 90.02666 * 1 2 3 22 22 H 1.08996 * 109.47546 * 210.02746 * 1 2 3 23 23 H 1.09001 * 109.47484 * 330.03068 * 1 2 3 24 24 H 1.08003 * 124.33705 * 359.97438 * 3 2 1 25 25 H 1.08005 * 119.03835 * 180.02562 * 7 6 5 26 26 H 1.08003 * 119.70869 * 180.02562 * 8 7 6 27 27 H 1.08001 * 119.99998 * 174.48565 * 10 9 8 28 28 H 0.97002 * 120.00249 * 5.61570 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2163 1.1131 0.0000 4 16 3.9359 0.7733 0.0007 5 6 3.6599 -0.9641 0.0018 6 6 2.2881 -1.2259 0.0010 7 6 1.8301 -2.5655 0.0011 8 6 2.6959 -3.6266 0.0015 9 6 4.0803 -3.4164 -0.0035 10 6 5.0046 -4.5496 -0.0093 11 8 4.5778 -5.6816 0.0912 12 6 4.5867 -2.0419 0.0033 13 6 5.9661 -1.7930 0.0047 14 1 6.6222 -2.3840 -0.6171 15 6 6.4952 -0.7746 0.8148 16 7 5.8461 -0.3822 1.8773 17 14 8.1276 0.0181 0.3719 18 1 8.4624 1.0576 1.3782 19 1 9.1923 -1.0170 0.3556 20 1 8.0255 0.6445 -0.9708 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3634 0.8902 0.5133 24 1 1.7916 2.1061 -0.0004 25 1 0.7670 -2.7561 0.0001 26 1 2.3074 -4.6344 0.0012 27 1 6.0670 -4.3794 -0.1030 28 1 5.0408 -0.8475 2.1531 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396335851.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:50 Heat of formation + Delta-G solvation = -32.904273 kcal Electronic energy + Delta-G solvation = -15062.112262 eV Core-core repulsion = 12553.799488 eV Total energy + Delta-G solvation = -2508.312774 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30769 -39.12141 -37.02120 -35.31416 -31.77854 -31.03981 -28.78970 -27.06559 -25.41047 -23.10784 -22.00484 -20.69053 -19.37841 -18.10640 -17.46112 -16.50226 -16.10682 -15.72106 -15.42785 -15.28396 -14.78459 -14.65215 -14.31330 -13.93637 -13.64364 -13.29764 -13.13772 -12.99579 -12.40904 -12.22138 -11.99948 -11.68311 -11.61575 -11.36854 -10.82482 -10.45185 -10.13450 -9.51544 -9.24748 -8.31985 -6.73781 -0.35136 0.71559 0.95092 1.05975 1.43249 1.52085 1.61697 1.78663 1.94437 2.25540 2.58742 3.24590 3.79676 3.83636 4.17639 4.36968 4.46168 4.58707 4.68915 4.79418 4.85960 4.98744 5.12603 5.25422 5.30829 5.35097 5.54753 5.68283 5.76993 5.88976 6.10157 6.40733 6.56727 6.86453 7.80304 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.013133 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.455912 B = 2131.516652 C = 3625.456733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.117 4.117 3 C -0.209 4.209 4 S 0.079 5.921 5 C -0.239 4.239 6 C -0.026 4.026 7 C -0.225 4.225 8 C -0.023 4.023 9 C -0.345 4.345 10 C 0.397 3.603 11 O -0.549 6.549 12 C 0.146 3.854 13 C -0.519 4.519 14 H 0.100 0.900 15 C 0.008 3.992 16 N -0.759 5.759 17 Si 1.099 2.901 18 H -0.267 1.267 19 H -0.251 1.251 20 H -0.259 1.259 21 H 0.079 0.921 22 H 0.066 0.934 23 H 0.084 0.916 24 H 0.190 0.810 25 H 0.126 0.874 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.075 6.220 -2.565 7.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C -0.343 4.343 4 S 0.346 5.654 5 C -0.354 4.354 6 C -0.036 4.036 7 C -0.246 4.246 8 C -0.043 4.043 9 C -0.350 4.350 10 C 0.267 3.733 11 O -0.434 6.434 12 C 0.140 3.860 13 C -0.544 4.544 14 H 0.118 0.882 15 C -0.214 4.214 16 N -0.379 5.379 17 Si 0.915 3.085 18 H -0.191 1.191 19 H -0.175 1.175 20 H -0.183 1.183 21 H 0.097 0.903 22 H 0.084 0.916 23 H 0.103 0.897 24 H 0.207 0.793 25 H 0.144 0.856 26 H 0.132 0.868 27 H 0.118 0.882 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.972 7.866 -2.003 8.175 hybrid contribution -2.349 -2.250 -0.323 3.269 sum -3.320 5.616 -2.326 6.926 Atomic orbital electron populations 1.20512 0.87450 1.03395 1.02993 1.20095 0.98407 0.90223 1.04301 1.25449 0.97279 1.02884 1.08733 1.83948 1.04555 0.98993 1.77934 1.23126 0.96674 0.97068 1.18555 1.19571 0.91394 0.94481 0.98132 1.20313 0.98989 0.89755 1.15547 1.20814 0.92566 0.97992 0.92923 1.21463 0.94585 0.93656 1.25319 1.23447 0.94867 0.86016 0.68989 1.90376 1.83103 1.26927 1.42965 1.18343 0.92609 0.88733 0.86324 1.20886 0.93004 1.17216 1.23326 0.88178 1.28414 1.07613 0.93608 0.91756 1.70440 1.14232 1.35087 1.18135 0.83222 0.70084 0.77276 0.77939 1.19141 1.17463 1.18306 0.90257 0.91552 0.89673 0.79316 0.85618 0.86831 0.88178 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.18 10.00 71.24 0.71 -1.47 15 2 C -0.12 -4.19 5.97 -18.93 -0.11 -4.30 15 3 C -0.21 -7.21 10.76 66.92 0.72 -6.49 15 4 S 0.08 3.29 20.37 -56.49 -1.15 2.14 15 5 C -0.24 -11.35 5.32 23.58 0.13 -11.23 15 6 C -0.03 -1.15 6.01 -20.28 -0.12 -1.27 15 7 C -0.23 -9.57 9.68 22.79 0.22 -9.35 15 8 C -0.02 -1.05 9.54 22.40 0.21 -0.83 15 9 C -0.34 -16.76 6.06 -18.61 -0.11 -16.87 15 10 C 0.40 18.30 11.03 69.90 0.77 19.07 15 11 O -0.55 -27.16 17.19 -3.40 -0.06 -27.22 15 12 C 0.15 7.27 5.05 -19.69 -0.10 7.17 15 13 C -0.52 -24.58 7.98 23.28 0.19 -24.39 15 14 H 0.10 4.48 7.31 -2.91 -0.02 4.46 15 15 C 0.01 0.37 4.15 85.43 0.35 0.73 15 16 N -0.76 -36.67 11.80 21.92 0.26 -36.41 15 17 Si 1.10 38.19 30.00 68.60 2.06 40.25 15 18 H -0.27 -9.23 7.11 99.48 0.71 -8.52 15 19 H -0.25 -7.91 7.11 99.48 0.71 -7.20 15 20 H -0.26 -8.57 7.11 99.48 0.71 -7.86 15 21 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 22 H 0.07 1.69 7.48 -2.39 -0.02 1.67 15 23 H 0.08 1.77 8.12 -2.39 -0.02 1.75 15 24 H 0.19 4.92 8.06 -2.91 -0.02 4.90 15 25 H 0.13 4.53 7.51 -2.91 -0.02 4.51 15 26 H 0.11 4.92 7.66 -2.91 -0.02 4.90 15 27 H 0.10 4.19 6.96 -2.91 -0.02 4.17 15 28 H 0.28 14.72 7.24 -92.71 -0.67 14.05 15 Total: -1.00 -57.13 260.71 5.25 -51.88 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 1.28 Total: 18.60 kcal Atomic # 6 Polarization: -52.10 SS G_CDS: 2.86 Total: -49.24 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.26 Total: -36.41 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.06 Total: -27.22 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.06 Total: 40.25 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.15 Total: 2.14 kcal Total: -57.13 5.25 -51.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396335851.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.973 kcal (2) G-P(sol) polarization free energy of solvation -57.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds