Wall clock time and date at job start Mon Mar 30 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40677 * 119.75877 * 2 1 4 4 C 1.45461 * 128.35759 * 0.03785 * 3 2 1 5 5 C 1.31944 * 114.95531 * 179.97438 * 4 3 2 6 6 S 1.75211 * 111.51075 * 359.97438 * 5 4 3 7 7 C 1.40409 * 119.93026 * 179.97438 * 3 2 1 8 8 C 1.39756 * 120.83365 * 359.71402 * 7 3 2 9 9 C 1.38939 * 120.70249 * 0.59316 * 8 7 3 10 10 C 1.46208 * 120.51345 * 179.69266 * 9 8 7 11 11 O 1.21397 * 120.00166 * 174.73644 * 10 9 8 12 12 C 1.39782 * 119.75369 * 180.02562 * 2 1 3 13 13 C 1.40608 * 120.46413 * 359.97438 * 12 2 1 14 14 H 1.07992 * 120.00117 * 303.22741 * 13 12 2 15 15 C 1.40232 * 119.99718 * 123.23337 * 13 12 2 16 16 N 1.30675 * 119.99725 * 170.01149 * 15 13 12 17 17 Si 1.86797 * 120.00459 * 350.01689 * 15 13 12 18 18 H 1.48499 * 109.47248 * 85.06552 * 17 15 13 19 19 H 1.48492 * 109.47427 * 205.06947 * 17 15 13 20 20 H 1.48507 * 109.46761 * 325.06650 * 17 15 13 21 21 H 1.09000 * 109.47033 * 269.98642 * 1 2 3 22 22 H 1.08997 * 109.46466 * 29.97990 * 1 2 3 23 23 H 1.09000 * 109.47133 * 149.98248 * 1 2 3 24 24 H 1.07999 * 122.51659 * 359.93934 * 4 3 2 25 25 H 1.08000 * 124.24095 * 179.97438 * 5 4 3 26 26 H 1.08003 * 119.64727 * 180.28684 * 8 7 3 27 27 H 1.07995 * 119.99710 * 354.72995 * 10 9 8 28 28 H 0.97001 * 119.99936 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2053 1.2212 0.0000 4 6 1.6631 2.5710 0.0008 5 6 2.5657 3.5335 0.0011 6 16 4.1942 2.8871 0.0012 7 6 3.6094 1.2254 0.0005 8 6 4.3293 0.0276 0.0071 9 6 3.6708 -1.1958 0.0008 10 6 4.4281 -2.4465 0.0009 11 8 3.8466 -3.5082 0.0919 12 6 2.2007 -1.2135 -0.0005 13 6 1.5023 -2.4339 -0.0005 14 1 0.7896 -2.6482 0.7820 15 6 1.7314 -3.3728 -1.0167 16 7 1.2363 -4.5780 -0.9164 17 14 2.7443 -2.9008 -2.5136 18 1 4.1867 -3.0871 -2.2140 19 1 2.3619 -3.7617 -3.6615 20 1 2.4893 -1.4782 -2.8552 21 1 -0.3633 -0.0002 1.0277 22 1 -0.3632 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5141 24 1 0.6017 2.7703 0.0005 25 1 2.3301 4.5875 0.0012 26 1 5.4090 0.0532 0.0121 27 1 5.5048 -2.4257 -0.0800 28 1 1.3944 -5.2273 -1.6194 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396335854.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:33 Heat of formation + Delta-G solvation = -2.292051 kcal Electronic energy + Delta-G solvation = -15342.971118 eV Core-core repulsion = 12835.985789 eV Total energy + Delta-G solvation = -2506.985328 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.56774 -39.11214 -36.12670 -34.85765 -33.54453 -30.92191 -28.60300 -26.70723 -25.08365 -23.18336 -21.58534 -21.07200 -19.07055 -18.03281 -17.43240 -17.09270 -16.17994 -15.88065 -15.25974 -15.15810 -14.91651 -14.56839 -14.30431 -13.83048 -13.59297 -13.46273 -13.29678 -12.89329 -12.46378 -12.26934 -12.02159 -11.80950 -11.46791 -11.26061 -11.17113 -10.11341 -10.01925 -9.15202 -8.70928 -8.36070 -6.36057 -0.40599 0.58849 0.84859 0.95456 1.22407 1.23700 1.28878 1.42591 2.00652 2.17442 2.76252 3.24459 3.61065 3.96074 4.01352 4.41431 4.53674 4.65947 4.73413 4.76611 4.96367 5.00272 5.11193 5.20291 5.29075 5.42822 5.46351 5.69631 5.90152 6.13802 6.30262 6.72074 6.89561 6.96912 8.39559 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031196 B = 0.009418 C = 0.008213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.324181 B = 2972.161007 C = 3408.487013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.162 4.162 3 C -0.036 4.036 4 C -0.142 4.142 5 C -0.170 4.170 6 S 0.061 5.939 7 C -0.239 4.239 8 C -0.008 4.008 9 C -0.270 4.270 10 C 0.362 3.638 11 O -0.473 6.473 12 C 0.109 3.891 13 C -0.481 4.481 14 H 0.053 0.947 15 C 0.096 3.904 16 N -0.853 5.853 17 Si 0.935 3.065 18 H -0.252 1.252 19 H -0.278 1.278 20 H -0.262 1.262 21 H 0.055 0.945 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.158 0.842 25 H 0.199 0.801 26 H 0.150 0.850 27 H 0.128 0.872 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.469 14.156 -1.132 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.166 4.166 3 C -0.043 4.043 4 C -0.173 4.173 5 C -0.303 4.303 6 S 0.321 5.679 7 C -0.353 4.353 8 C -0.030 4.030 9 C -0.274 4.274 10 C 0.223 3.777 11 O -0.348 6.348 12 C 0.104 3.896 13 C -0.511 4.511 14 H 0.071 0.929 15 C -0.118 4.118 16 N -0.481 5.481 17 Si 0.759 3.241 18 H -0.177 1.177 19 H -0.204 1.204 20 H -0.186 1.186 21 H 0.074 0.926 22 H 0.091 0.909 23 H 0.069 0.931 24 H 0.176 0.824 25 H 0.216 0.784 26 H 0.168 0.832 27 H 0.144 0.856 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.496 14.058 -1.142 15.528 hybrid contribution -1.265 -1.100 -0.381 1.719 sum 5.231 12.958 -1.523 14.057 Atomic orbital electron populations 1.20419 0.90903 1.01679 1.00999 1.20396 0.96338 0.90694 1.09158 1.19538 0.92138 0.93748 0.98865 1.21229 1.01713 0.89562 1.04804 1.25380 0.94997 1.04194 1.05766 1.83485 1.07781 0.94969 1.81626 1.22465 0.96369 0.97943 1.18529 1.20710 0.99522 0.88835 0.93980 1.22166 0.95070 0.95345 1.14850 1.24007 0.95352 0.87046 0.71271 1.90623 1.74620 1.34001 1.35595 1.18550 0.90345 0.92648 0.88038 1.18677 1.22657 0.99021 1.10717 0.92875 1.26241 0.92193 0.92601 1.00782 1.69590 1.40198 1.04448 1.33868 0.86138 0.80833 0.79212 0.77953 1.17682 1.20406 1.18645 0.92622 0.90928 0.93146 0.82421 0.78386 0.83199 0.85616 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.30 9.41 71.24 0.67 -2.63 15 2 C -0.16 -7.24 6.00 -18.89 -0.11 -7.35 15 3 C -0.04 -1.38 5.96 -20.29 -0.12 -1.50 15 4 C -0.14 -4.21 9.75 23.26 0.23 -3.99 15 5 C -0.17 -4.15 11.01 66.95 0.74 -3.42 15 6 S 0.06 1.67 23.23 -56.49 -1.31 0.36 15 7 C -0.24 -8.71 6.46 23.17 0.15 -8.56 15 8 C -0.01 -0.31 9.79 22.81 0.22 -0.09 15 9 C -0.27 -11.90 4.80 -18.74 -0.09 -11.99 15 10 C 0.36 15.31 8.72 69.89 0.61 15.92 15 11 O -0.47 -24.51 12.31 -3.39 -0.04 -24.55 15 12 C 0.11 5.43 4.43 -20.02 -0.09 5.34 15 13 C -0.48 -27.29 6.90 23.33 0.16 -27.13 15 14 H 0.05 3.33 8.06 -2.91 -0.02 3.31 15 15 C 0.10 5.41 3.55 85.35 0.30 5.71 15 16 N -0.85 -50.06 13.92 21.88 0.30 -49.76 15 17 Si 0.94 44.66 24.35 68.60 1.67 46.33 15 18 H -0.25 -11.26 5.65 99.48 0.56 -10.70 15 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 20 H -0.26 -12.52 7.11 99.48 0.71 -11.81 15 21 H 0.06 2.08 8.14 -2.39 -0.02 2.07 15 22 H 0.07 2.36 7.14 -2.39 -0.02 2.34 15 23 H 0.05 2.21 7.09 -2.39 -0.02 2.20 15 24 H 0.16 3.89 7.43 -2.91 -0.02 3.87 15 25 H 0.20 3.14 8.06 -2.91 -0.02 3.12 15 26 H 0.15 4.20 8.06 -2.91 -0.02 4.18 15 27 H 0.13 3.90 8.06 -2.91 -0.02 3.87 15 28 H 0.28 15.36 8.29 -92.71 -0.77 14.59 15 Total: -1.00 -66.59 250.79 4.33 -62.26 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.04 Total: 5.03 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 2.67 Total: -39.68 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.30 Total: -49.76 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.04 Total: -24.55 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.67 Total: 46.33 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.31 Total: 0.36 kcal Total: -66.59 4.33 -62.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396335854.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.972 kcal (2) G-P(sol) polarization free energy of solvation -66.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds