Wall clock time and date at job start Mon Mar 30 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39751 * 119.64482 * 2 1 4 4 S 1.76152 * 129.60850 * 359.97438 * 3 2 1 5 5 C 1.75218 * 92.26112 * 180.02562 * 4 3 2 6 6 C 1.31937 * 111.50554 * 0.02562 * 5 4 3 7 7 C 1.40412 * 120.83070 * 179.97438 * 3 2 1 8 8 C 1.40681 * 119.93345 * 359.97438 * 7 3 2 9 9 C 1.39775 * 120.48326 * 0.02562 * 8 7 3 10 10 C 1.40603 * 120.46753 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00205 * 152.36261 * 10 9 8 12 12 C 1.40240 * 120.00109 * 332.08616 * 10 9 8 13 13 N 1.30683 * 119.99401 * 348.76025 * 12 10 9 14 14 Si 1.86789 * 120.00205 * 168.75723 * 12 10 9 15 15 H 1.48499 * 109.47338 * 60.00294 * 14 12 10 16 16 H 1.48499 * 109.47343 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47685 * 300.00174 * 14 12 10 18 18 C 1.38941 * 119.64930 * 180.28017 * 2 1 3 19 19 C 1.46210 * 120.51177 * 0.02562 * 18 2 1 20 20 O 1.21390 * 120.00104 * 5.92400 * 19 18 2 21 21 H 1.09005 * 109.47404 * 97.18696 * 1 2 3 22 22 H 1.09002 * 109.47387 * 217.18799 * 1 2 3 23 23 H 1.09003 * 109.47267 * 337.18886 * 1 2 3 24 24 H 1.07998 * 124.24297 * 179.97438 * 5 4 3 25 25 H 1.08007 * 122.51962 * 179.97438 * 6 5 4 26 26 H 1.07998 * 119.75675 * 179.97438 * 8 7 3 27 27 H 0.97006 * 119.99316 * 179.97438 * 13 12 10 28 28 H 1.08001 * 120.00120 * 185.92377 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.2146 0.0000 4 16 1.5743 2.8619 -0.0006 5 6 3.1871 3.5467 -0.0009 6 6 4.1120 2.6059 -0.0011 7 6 3.6021 1.2436 0.0005 8 6 4.3291 0.0393 0.0016 9 6 3.6644 -1.1903 0.0017 10 6 4.3914 -2.3938 0.0022 11 1 3.9612 -3.2843 0.4361 12 6 5.6728 -2.4392 -0.5658 13 7 6.1042 -1.4374 -1.2856 14 14 6.7627 -3.9315 -0.2937 15 1 6.0892 -5.1410 -0.8309 16 1 8.0573 -3.7333 -0.9937 17 1 7.0086 -4.1065 1.1603 18 6 2.1943 -1.2075 -0.0059 19 6 1.4669 -2.4757 -0.0127 20 8 0.2579 -2.4814 -0.1217 21 1 -0.3634 -0.1286 -1.0196 22 1 -0.3634 -0.8187 0.6212 23 1 -0.3634 0.9473 0.3984 24 1 3.3975 4.6060 -0.0017 25 1 5.1685 2.8303 -0.0017 26 1 5.4088 0.0650 0.0016 27 1 6.9907 -1.4686 -1.6782 28 1 2.0051 -3.4075 0.0793 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396335939.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:43 Heat of formation + Delta-G solvation = -20.268123 kcal Electronic energy + Delta-G solvation = -14980.645896 eV Core-core repulsion = 12472.881067 eV Total energy + Delta-G solvation = -2507.764829 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.45137 -38.90355 -36.52363 -35.31290 -32.79223 -30.66232 -28.28731 -27.31929 -25.00002 -23.00213 -22.02762 -20.83961 -18.80590 -18.44597 -17.13352 -16.70454 -16.52775 -15.57299 -15.35781 -15.27503 -14.48547 -14.12986 -14.09222 -13.71093 -13.58961 -13.50918 -13.26592 -12.91971 -12.65620 -12.45484 -11.95336 -11.89584 -11.57612 -11.28395 -10.99379 -10.12906 -10.03185 -9.20245 -8.75654 -8.47640 -6.44833 -0.26127 0.80565 0.97465 1.10200 1.36199 1.43926 1.55334 1.57409 2.08418 2.17629 2.62152 3.50739 3.85181 4.01965 4.08926 4.36724 4.64685 4.69323 4.75713 4.79726 4.92622 5.04163 5.10834 5.14924 5.28256 5.56757 5.58587 5.81076 5.90284 6.05230 6.46788 6.63497 6.77174 6.90258 8.16156 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.009034 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.787479 B = 3098.498316 C = 4248.255634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.028 3.972 3 C -0.275 4.275 4 S 0.028 5.972 5 C -0.172 4.172 6 C -0.143 4.143 7 C -0.041 4.041 8 C -0.180 4.180 9 C 0.124 3.876 10 C -0.457 4.457 11 H 0.103 0.897 12 C 0.036 3.964 13 N -0.801 5.801 14 Si 0.991 3.009 15 H -0.254 1.254 16 H -0.270 1.270 17 H -0.256 1.256 18 C -0.306 4.306 19 C 0.392 3.608 20 O -0.524 6.524 21 H 0.066 0.934 22 H 0.083 0.917 23 H 0.058 0.942 24 H 0.196 0.804 25 H 0.151 0.849 26 H 0.119 0.881 27 H 0.297 0.703 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.713 2.940 1.792 3.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.024 3.976 3 C -0.388 4.388 4 S 0.286 5.714 5 C -0.305 4.305 6 C -0.174 4.174 7 C -0.047 4.047 8 C -0.202 4.202 9 C 0.119 3.881 10 C -0.485 4.485 11 H 0.120 0.880 12 C -0.183 4.183 13 N -0.425 5.425 14 Si 0.811 3.189 15 H -0.178 1.178 16 H -0.194 1.194 17 H -0.180 1.180 18 C -0.310 4.310 19 C 0.261 3.739 20 O -0.406 6.406 21 H 0.085 0.915 22 H 0.101 0.899 23 H 0.077 0.923 24 H 0.213 0.787 25 H 0.168 0.832 26 H 0.136 0.864 27 H 0.108 0.892 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.110 3.711 1.581 4.184 hybrid contribution 2.175 -0.952 -0.129 2.377 sum 1.065 2.759 1.452 3.295 Atomic orbital electron populations 1.20944 0.90611 1.01986 1.02470 1.19568 0.95482 0.90451 0.92116 1.22044 0.96126 0.96441 1.24236 1.83234 1.08320 0.96506 1.83327 1.25311 0.95053 1.03920 1.06231 1.21254 1.01147 0.90346 1.04668 1.19736 0.92076 0.94420 0.98492 1.21226 0.99077 0.89950 1.09971 1.18675 0.89522 0.93781 0.86125 1.19985 0.99775 0.96871 1.31855 0.87952 1.26990 0.98827 1.00914 0.91606 1.69777 1.19351 1.32331 1.21038 0.85085 0.76729 0.77130 0.79995 1.17794 1.19417 1.17984 1.21522 0.94309 0.94360 1.20824 1.23576 0.87794 0.93190 0.69349 1.90358 1.18340 1.90900 1.41020 0.91513 0.89891 0.92292 0.78709 0.83184 0.86361 0.89213 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.21 8.57 71.24 0.61 -3.60 15 2 C 0.03 1.31 5.95 -19.33 -0.11 1.20 15 3 C -0.28 -12.50 6.31 23.17 0.15 -12.35 15 4 S 0.03 1.01 22.27 -56.49 -1.26 -0.25 15 5 C -0.17 -5.57 11.01 66.95 0.74 -4.84 15 6 C -0.14 -5.40 10.37 23.27 0.24 -5.16 15 7 C -0.04 -1.91 6.01 -20.29 -0.12 -2.03 15 8 C -0.18 -9.03 8.71 23.24 0.20 -8.83 15 9 C 0.12 6.18 5.70 -20.03 -0.11 6.07 15 10 C -0.46 -21.34 8.48 23.33 0.20 -21.14 15 11 H 0.10 4.32 6.68 -2.91 -0.02 4.30 15 12 C 0.04 1.57 5.25 85.35 0.45 2.01 15 13 N -0.80 -37.34 10.81 21.88 0.24 -37.10 15 14 Si 0.99 32.87 29.58 68.60 2.03 34.90 15 15 H -0.25 -8.13 7.11 99.48 0.71 -7.42 15 16 H -0.27 -8.63 7.11 99.48 0.71 -7.93 15 17 H -0.26 -8.28 7.11 99.48 0.71 -7.58 15 18 C -0.31 -14.66 6.04 -18.74 -0.11 -14.77 15 19 C 0.39 16.90 10.96 69.89 0.77 17.67 15 20 O -0.52 -23.48 14.14 -3.37 -0.05 -23.53 15 21 H 0.07 2.67 8.14 -2.38 -0.02 2.65 15 22 H 0.08 3.43 5.88 -2.39 -0.01 3.41 15 23 H 0.06 2.15 7.27 -2.39 -0.02 2.14 15 24 H 0.20 4.50 8.06 -2.91 -0.02 4.48 15 25 H 0.15 4.95 8.06 -2.91 -0.02 4.93 15 26 H 0.12 6.05 6.13 -2.91 -0.02 6.03 15 27 H 0.30 12.41 8.29 -92.70 -0.77 11.64 15 28 H 0.11 4.21 6.68 -2.91 -0.02 4.19 15 Total: -1.00 -55.97 256.67 5.04 -50.93 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 1.20 Total: 20.84 kcal Atomic # 6 Polarization: -48.66 SS G_CDS: 2.89 Total: -45.78 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.24 Total: -37.10 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.05 Total: -23.53 kcal Atomic # 14 Polarization: 32.87 SS G_CDS: 2.03 Total: 34.90 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -1.26 Total: -0.25 kcal Total: -55.97 5.04 -50.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396335939.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.657 kcal (2) G-P(sol) polarization free energy of solvation -55.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds