Wall clock time and date at job start Mon Mar 30 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37296 * 119.60954 * 2 1 4 4 C 1.41796 * 120.77583 * 180.02562 * 3 2 1 5 5 C 1.39864 * 128.46589 * 180.02562 * 4 3 2 6 6 C 1.36913 * 115.03947 * 179.97438 * 5 4 3 7 7 C 1.39872 * 124.82225 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00142 * 0.02562 * 7 6 5 9 9 C 1.40232 * 119.99974 * 180.02562 * 7 6 5 10 10 N 1.30739 * 119.99585 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00093 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47134 * 60.00101 * 11 9 7 13 13 H 1.48498 * 109.46990 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46918 * 299.99987 * 11 9 7 15 15 S 1.75449 * 110.35257 * 0.02562 * 6 5 4 16 16 C 1.40342 * 118.69797 * 0.02562 * 4 3 2 17 17 C 1.41294 * 119.72103 * 0.02562 * 16 4 3 18 18 C 1.46669 * 120.00745 * 180.25142 * 17 16 4 19 19 O 1.21321 * 119.99768 * 179.72131 * 18 17 16 20 20 C 1.38300 * 119.60550 * 180.02562 * 2 1 3 21 21 H 1.09006 * 109.47026 * 269.97668 * 1 2 3 22 22 H 1.08996 * 109.47382 * 29.97286 * 1 2 3 23 23 H 1.09006 * 109.47561 * 149.98095 * 1 2 3 24 24 H 1.08008 * 119.60809 * 0.02562 * 3 2 1 25 25 H 1.08006 * 122.48149 * 359.93015 * 5 4 3 26 26 H 0.96995 * 119.99549 * 180.02562 * 10 9 7 27 27 H 1.08001 * 120.00606 * 359.72918 * 18 17 16 28 28 H 1.08002 * 119.98694 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1853 1.1937 0.0000 4 6 3.6030 1.2225 -0.0005 5 6 4.4505 2.3351 -0.0001 6 6 5.7884 2.0444 -0.0003 7 6 6.8128 2.9968 0.0005 8 1 6.5714 4.0495 0.0018 9 6 8.1532 2.5849 -0.0003 10 7 8.4454 1.3106 -0.0023 11 14 9.5212 3.8569 0.0001 12 1 9.4075 4.7057 1.2133 13 1 10.8370 3.1686 -0.0015 14 1 9.4065 4.7075 -1.2118 15 16 6.0354 0.3074 -0.0017 16 6 4.3018 0.0055 -0.0016 17 6 3.5865 -1.2130 -0.0027 18 6 4.3105 -2.4886 0.0017 19 8 3.6961 -3.5347 0.0059 20 6 2.1902 -1.2024 -0.0005 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3634 -0.8898 -0.5141 24 1 1.6325 2.1216 0.0004 25 1 4.0773 3.3486 -0.0004 26 1 9.3725 1.0257 -0.0025 27 1 5.3904 -2.4967 0.0014 28 1 1.6435 -2.1339 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396335965.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:50 Heat of formation + Delta-G solvation = -28.832537 kcal Electronic energy + Delta-G solvation = -14550.173346 eV Core-core repulsion = 12042.037136 eV Total energy + Delta-G solvation = -2508.136210 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.99605 -37.62919 -35.18415 -33.64082 -31.47770 -29.42006 -26.70743 -25.50263 -23.92894 -21.84265 -20.05876 -18.73151 -18.07717 -16.27383 -15.66742 -15.43768 -14.64201 -14.13670 -13.79237 -13.76648 -13.23961 -13.09777 -12.86197 -12.16670 -11.93066 -11.77832 -11.55760 -11.51710 -11.31085 -10.69641 -10.50247 -10.32649 -10.18001 -9.44526 -9.37973 -9.00144 -8.50631 -7.52474 -7.30167 -6.54375 -4.79721 1.30633 2.12639 2.66927 2.78512 2.82887 2.99307 3.06511 3.47854 3.60200 3.68170 4.50920 4.91621 4.93218 5.49240 5.64792 5.83103 5.96051 5.98164 6.08868 6.21347 6.49285 6.56288 6.65311 6.92808 6.97780 7.16498 7.27883 7.39496 7.61603 7.76531 7.90837 7.97702 8.18070 8.29786 9.54114 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.033635 B = 0.006955 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.273805 B = 4024.740550 C = 4841.867794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.100 4.100 3 C -0.118 4.118 4 C 0.009 3.991 5 C -0.367 4.367 6 C 0.055 3.945 7 C -0.382 4.382 8 H 0.100 0.900 9 C 0.054 3.946 10 N -0.776 5.776 11 Si 0.940 3.060 12 H -0.259 1.259 13 H -0.272 1.272 14 H -0.259 1.259 15 S 0.147 5.853 16 C -0.222 4.222 17 C -0.135 4.135 18 C 0.386 3.614 19 O -0.483 6.483 20 C -0.120 4.120 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.304 0.696 27 H 0.094 0.906 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 0.589 0.008 1.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.102 4.102 3 C -0.138 4.138 4 C 0.002 3.998 5 C -0.392 4.392 6 C -0.064 4.064 7 C -0.416 4.416 8 H 0.118 0.882 9 C -0.168 4.168 10 N -0.402 5.402 11 Si 0.763 3.237 12 H -0.183 1.183 13 H -0.196 1.196 14 H -0.183 1.183 15 S 0.407 5.593 16 C -0.337 4.337 17 C -0.141 4.141 18 C 0.248 3.752 19 O -0.360 6.360 20 C -0.141 4.141 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.124 0.876 25 H 0.127 0.873 26 H 0.117 0.883 27 H 0.110 0.890 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.482 -0.990 0.006 1.101 hybrid contribution -0.609 1.663 0.008 1.771 sum -1.091 0.673 0.014 1.282 Atomic orbital electron populations 1.20678 0.92237 1.01751 1.01380 1.19260 0.94958 0.93056 1.02950 1.20873 0.92659 0.96367 1.03902 1.17990 0.92758 0.92231 0.96843 1.19559 0.91033 0.96664 1.31911 1.21398 0.95362 0.95104 0.94503 1.19324 0.89112 0.95202 1.37948 0.88194 1.26345 1.01375 0.96873 0.92194 1.68541 1.23186 1.16034 1.32470 0.85772 0.77594 0.79806 0.80543 1.18270 1.19629 1.18273 1.84820 0.93828 1.02566 1.78085 1.24074 1.02881 0.95263 1.11528 1.19871 0.93904 0.92787 1.07523 1.23960 0.94839 0.87117 0.69301 1.90432 1.73302 1.35350 1.36868 1.20685 0.92496 0.96880 1.04009 0.92115 0.92287 0.92295 0.87557 0.87339 0.88269 0.89023 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.51 9.99 36.00 0.36 -1.15 15 2 C -0.10 -1.90 5.85 -104.94 -0.61 -2.52 15 3 C -0.12 -2.44 9.69 -38.57 -0.37 -2.82 15 4 C 0.01 0.22 5.85 -107.14 -0.63 -0.40 15 5 C -0.37 -8.93 10.14 -39.45 -0.40 -9.33 15 6 C 0.06 1.37 6.11 -39.45 -0.24 1.13 15 7 C -0.38 -9.01 9.27 -38.22 -0.35 -9.37 15 8 H 0.10 2.21 7.85 -52.48 -0.41 1.80 15 9 C 0.05 1.16 5.50 -17.27 -0.09 1.07 15 10 N -0.78 -17.19 10.58 55.56 0.59 -16.60 15 11 Si 0.94 16.13 29.56 -169.99 -5.03 11.10 15 12 H -0.26 -4.41 7.11 56.52 0.40 -4.00 15 13 H -0.27 -4.52 7.11 56.52 0.40 -4.12 15 14 H -0.26 -4.41 7.11 56.52 0.40 -4.01 15 15 S 0.15 3.40 19.54 -107.50 -2.10 1.30 15 16 C -0.22 -5.13 6.37 -37.63 -0.24 -5.37 15 17 C -0.13 -2.88 5.89 -104.81 -0.62 -3.50 15 18 C 0.39 7.58 11.29 34.13 0.39 7.97 15 19 O -0.48 -10.16 17.13 5.52 0.09 -10.07 15 20 C -0.12 -2.43 9.22 -39.04 -0.36 -2.79 15 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.06 0.78 8.07 -51.93 -0.42 0.36 15 23 H 0.06 0.78 8.08 -51.93 -0.42 0.36 15 24 H 0.11 1.97 8.06 -52.48 -0.42 1.55 15 25 H 0.11 2.52 8.06 -52.48 -0.42 2.09 15 26 H 0.30 6.01 8.29 -40.82 -0.34 5.68 15 27 H 0.09 1.62 7.67 -52.49 -0.40 1.21 15 28 H 0.12 2.18 7.62 -52.49 -0.40 1.78 15 LS Contribution 265.14 15.07 4.00 4.00 Total: -1.00 -26.17 265.14 -8.08 -34.25 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -2.46 Total: 3.09 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -3.18 Total: -27.07 kcal Atomic # 7 Polarization: -17.19 SS G_CDS: 0.59 Total: -16.60 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 16.13 SS G_CDS: -5.03 Total: 11.10 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -2.10 Total: 1.30 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.17 -8.08 -34.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396335965.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.421 kcal (2) G-P(sol) polarization free energy of solvation -26.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds