Wall clock time and date at job start Mon Mar 30 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37296 * 119.60954 * 2 1 4 4 C 1.41796 * 120.77583 * 180.02562 * 3 2 1 5 5 C 1.39864 * 128.46589 * 180.02562 * 4 3 2 6 6 C 1.36913 * 115.03947 * 179.97438 * 5 4 3 7 7 C 1.39872 * 124.82225 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00142 * 0.02562 * 7 6 5 9 9 C 1.40232 * 119.99974 * 180.02562 * 7 6 5 10 10 N 1.30739 * 119.99585 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00093 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47134 * 60.00101 * 11 9 7 13 13 H 1.48498 * 109.46990 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46918 * 299.99987 * 11 9 7 15 15 S 1.75449 * 110.35257 * 0.02562 * 6 5 4 16 16 C 1.40342 * 118.69797 * 0.02562 * 4 3 2 17 17 C 1.41294 * 119.72103 * 0.02562 * 16 4 3 18 18 C 1.46669 * 120.00745 * 180.25142 * 17 16 4 19 19 O 1.21321 * 119.99768 * 179.72131 * 18 17 16 20 20 C 1.38300 * 119.60550 * 180.02562 * 2 1 3 21 21 H 1.09006 * 109.47026 * 269.97668 * 1 2 3 22 22 H 1.08996 * 109.47382 * 29.97286 * 1 2 3 23 23 H 1.09006 * 109.47561 * 149.98095 * 1 2 3 24 24 H 1.08008 * 119.60809 * 0.02562 * 3 2 1 25 25 H 1.08006 * 122.48149 * 359.93015 * 5 4 3 26 26 H 0.96995 * 119.99549 * 180.02562 * 10 9 7 27 27 H 1.08001 * 120.00606 * 359.72918 * 18 17 16 28 28 H 1.08002 * 119.98694 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1853 1.1937 0.0000 4 6 3.6030 1.2225 -0.0005 5 6 4.4505 2.3351 -0.0001 6 6 5.7884 2.0444 -0.0003 7 6 6.8128 2.9968 0.0005 8 1 6.5714 4.0495 0.0018 9 6 8.1532 2.5849 -0.0003 10 7 8.4454 1.3106 -0.0023 11 14 9.5212 3.8569 0.0001 12 1 9.4075 4.7057 1.2133 13 1 10.8370 3.1686 -0.0015 14 1 9.4065 4.7075 -1.2118 15 16 6.0354 0.3074 -0.0017 16 6 4.3018 0.0055 -0.0016 17 6 3.5865 -1.2130 -0.0027 18 6 4.3105 -2.4886 0.0017 19 8 3.6961 -3.5347 0.0059 20 6 2.1902 -1.2024 -0.0005 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3634 -0.8898 -0.5141 24 1 1.6325 2.1216 0.0004 25 1 4.0773 3.3486 -0.0004 26 1 9.3725 1.0257 -0.0025 27 1 5.3904 -2.4967 0.0014 28 1 1.6435 -2.1339 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396335965.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:49 Heat of formation + Delta-G solvation = -41.025631 kcal Electronic energy + Delta-G solvation = -14550.702078 eV Core-core repulsion = 12042.037136 eV Total energy + Delta-G solvation = -2508.664943 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.62483 -39.26865 -36.87007 -35.27434 -33.04880 -31.11359 -28.16723 -27.13397 -25.57555 -23.52266 -21.63891 -20.43770 -19.79077 -17.96315 -17.29335 -16.97518 -16.22337 -15.75219 -15.45244 -15.39533 -14.73554 -14.46296 -14.43035 -13.74486 -13.47117 -13.38908 -13.01473 -12.94226 -12.81768 -12.19220 -12.05350 -11.86373 -11.83166 -11.19009 -11.00345 -10.66124 -10.16810 -9.26017 -8.94503 -8.29284 -6.57956 -0.32994 0.44104 1.14132 1.30756 1.37843 1.52111 1.53029 1.81708 1.95501 2.13169 2.83128 3.20123 3.38144 4.03875 4.24478 4.30202 4.49809 4.54649 4.86712 4.89144 4.89903 4.95142 5.17147 5.28015 5.33642 5.45170 5.55655 5.76807 5.89016 6.04682 6.21875 6.37607 6.44345 6.54091 7.93050 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.033635 B = 0.006955 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.273805 B = 4024.740550 C = 4841.867794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.094 4.094 3 C -0.127 4.127 4 C -0.015 4.015 5 C -0.394 4.394 6 C 0.026 3.974 7 C -0.411 4.411 8 H 0.104 0.896 9 C 0.020 3.980 10 N -0.796 5.796 11 Si 1.012 2.988 12 H -0.256 1.256 13 H -0.259 1.259 14 H -0.256 1.256 15 S 0.142 5.858 16 C -0.242 4.242 17 C -0.149 4.149 18 C 0.395 3.605 19 O -0.496 6.496 20 C -0.122 4.122 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.125 0.875 25 H 0.106 0.894 26 H 0.315 0.685 27 H 0.115 0.885 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 0.558 0.014 2.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.022 4.022 5 C -0.418 4.418 6 C -0.093 4.093 7 C -0.444 4.444 8 H 0.122 0.878 9 C -0.199 4.199 10 N -0.422 5.422 11 Si 0.830 3.170 12 H -0.179 1.179 13 H -0.183 1.183 14 H -0.180 1.180 15 S 0.402 5.598 16 C -0.357 4.357 17 C -0.155 4.155 18 C 0.257 3.743 19 O -0.373 6.373 20 C -0.142 4.142 21 H 0.096 0.904 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.143 0.857 25 H 0.124 0.876 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.812 -1.043 0.013 1.322 hybrid contribution -0.622 1.606 0.007 1.723 sum -1.435 0.564 0.020 1.542 Atomic orbital electron populations 1.20755 0.88563 1.03436 1.02993 1.19765 0.97583 0.91870 1.00423 1.21177 0.91738 0.98069 1.03720 1.18279 0.94230 0.92126 0.97613 1.19694 0.91453 0.97004 1.33685 1.21759 0.96026 0.96199 0.95342 1.19672 0.90257 0.95386 1.39053 0.87841 1.27262 1.02862 0.98866 0.90954 1.68555 1.24453 1.17507 1.31722 0.84740 0.74664 0.77098 0.80502 1.17947 1.18290 1.17958 1.84513 0.94604 1.01972 1.78739 1.24186 1.02759 0.95906 1.12884 1.20165 0.94755 0.92926 1.07673 1.24099 0.95583 0.86214 0.68422 1.90424 1.73733 1.35512 1.37613 1.21059 0.92240 0.98097 1.02801 0.90369 0.90669 0.90647 0.85692 0.87575 0.87122 0.86881 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.57 9.99 71.23 0.71 -1.86 15 2 C -0.09 -3.39 5.85 -20.07 -0.12 -3.51 15 3 C -0.13 -5.16 9.69 22.93 0.22 -4.94 15 4 C -0.02 -0.72 5.85 -21.49 -0.13 -0.84 15 5 C -0.39 -19.85 10.14 22.35 0.23 -19.62 15 6 C 0.03 1.32 6.11 22.35 0.14 1.45 15 7 C -0.41 -19.81 9.27 23.15 0.21 -19.59 15 8 H 0.10 4.71 7.85 -2.91 -0.02 4.69 15 9 C 0.02 0.86 5.50 85.34 0.47 1.33 15 10 N -0.80 -35.24 10.58 21.88 0.23 -35.01 15 11 Si 1.01 32.13 29.56 68.60 2.03 34.16 15 12 H -0.26 -7.95 7.11 99.48 0.71 -7.24 15 13 H -0.26 -7.64 7.11 99.48 0.71 -6.94 15 14 H -0.26 -7.96 7.11 99.48 0.71 -7.25 15 15 S 0.14 6.74 19.54 -56.49 -1.10 5.64 15 16 C -0.24 -11.33 6.37 23.53 0.15 -11.18 15 17 C -0.15 -6.30 5.89 -19.99 -0.12 -6.42 15 18 C 0.39 15.14 11.29 70.02 0.79 15.93 15 19 O -0.50 -20.18 17.13 -3.16 -0.05 -20.24 15 20 C -0.12 -4.71 9.22 22.62 0.21 -4.50 15 21 H 0.08 1.78 8.14 -2.38 -0.02 1.76 15 22 H 0.07 1.70 8.07 -2.39 -0.02 1.68 15 23 H 0.07 1.70 8.08 -2.38 -0.02 1.68 15 24 H 0.13 4.48 8.06 -2.91 -0.02 4.46 15 25 H 0.11 5.16 8.06 -2.91 -0.02 5.13 15 26 H 0.31 12.25 8.29 -92.71 -0.77 11.48 15 27 H 0.11 3.89 7.67 -2.91 -0.02 3.87 15 28 H 0.13 4.63 7.62 -2.91 -0.02 4.61 15 Total: -1.00 -56.34 265.14 5.05 -51.29 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 1.18 Total: 17.92 kcal Atomic # 6 Polarization: -56.52 SS G_CDS: 2.77 Total: -53.75 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.23 Total: -35.01 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.05 Total: -20.24 kcal Atomic # 14 Polarization: 32.13 SS G_CDS: 2.03 Total: 34.16 kcal Atomic # 16 Polarization: 6.74 SS G_CDS: -1.10 Total: 5.64 kcal Total: -56.34 5.05 -51.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396335965.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.260 kcal (2) G-P(sol) polarization free energy of solvation -56.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds