Wall clock time and date at job start Mon Mar 30 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40900 * 119.61077 * 2 1 4 4 C 1.45591 * 129.01017 * 359.95794 * 3 2 1 5 5 C 1.31755 * 114.89893 * 180.02562 * 4 3 2 6 6 S 1.75283 * 111.40658 * 0.02562 * 5 4 3 7 7 C 1.39650 * 119.20424 * 179.97438 * 3 2 1 8 8 C 1.42390 * 119.94712 * 359.97438 * 7 3 2 9 9 C 1.41027 * 119.99246 * 179.97438 * 8 7 3 10 10 H 1.07999 * 120.00094 * 334.34939 * 9 8 7 11 11 C 1.39910 * 120.00182 * 154.34502 * 9 8 7 12 12 N 1.30867 * 120.00093 * 342.55248 * 11 9 8 13 13 Si 1.86803 * 119.99949 * 162.54584 * 11 9 8 14 14 H 1.48497 * 109.47021 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46814 * 120.00491 * 13 11 9 16 16 H 1.48493 * 109.47201 * 240.00262 * 13 11 9 17 17 C 1.39919 * 120.01587 * 0.02562 * 8 7 3 18 18 C 1.39408 * 119.60927 * 179.97438 * 2 1 3 19 19 C 1.47011 * 119.82470 * 0.03729 * 18 2 1 20 20 O 1.21272 * 119.99874 * 179.97438 * 19 18 2 21 21 H 1.08999 * 109.47065 * 89.99623 * 1 2 3 22 22 H 1.08994 * 109.47254 * 210.00073 * 1 2 3 23 23 H 1.09004 * 109.46941 * 329.99817 * 1 2 3 24 24 H 1.07999 * 122.54455 * 0.02562 * 4 3 2 25 25 H 1.08001 * 124.29858 * 179.97438 * 5 4 3 26 26 H 0.96998 * 120.00192 * 179.97438 * 12 11 9 27 27 H 1.07998 * 120.14930 * 179.97438 * 17 8 7 28 28 H 1.08001 * 119.99983 * 359.96192 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2033 1.2250 0.0000 4 6 1.6725 2.5807 -0.0008 5 6 2.5832 3.5329 -0.0011 6 16 4.2047 2.8673 -0.0011 7 6 3.5997 1.2151 0.0005 8 6 4.3018 -0.0237 0.0016 9 6 5.7120 -0.0348 0.0016 10 1 6.2586 0.8036 -0.4040 11 6 6.4029 -1.1321 0.5272 12 7 5.7871 -1.9775 1.3137 13 14 8.2045 -1.3902 0.1061 14 1 8.6631 -0.3022 -0.7944 15 1 9.0114 -1.3737 1.3527 16 1 8.3711 -2.6997 -0.5741 17 6 3.5928 -1.2300 0.0016 18 6 2.1959 -1.2120 0.0005 19 6 1.4483 -2.4779 0.0003 20 8 2.0442 -3.5340 0.0003 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 0.6130 2.7898 -0.0012 25 1 2.3590 4.5894 -0.0021 26 1 6.2660 -2.7384 1.6777 27 1 4.1231 -2.1708 0.0020 28 1 0.3683 -2.4672 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396336221.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:35 Heat of formation + Delta-G solvation = -8.495500 kcal Electronic energy + Delta-G solvation = -14961.112687 eV Core-core repulsion = 12453.858356 eV Total energy + Delta-G solvation = -2507.254330 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.89026 -37.48641 -34.88557 -33.50152 -31.49218 -28.71506 -27.39364 -24.37610 -23.90315 -21.72651 -20.39395 -18.93320 -17.54118 -16.26316 -15.56919 -15.28093 -14.64307 -14.09085 -13.88731 -13.65305 -12.92368 -12.81526 -12.76606 -12.11763 -12.02764 -11.67976 -11.62270 -11.28436 -10.97661 -10.74280 -10.48771 -10.02574 -9.92660 -9.75911 -9.27883 -8.81735 -8.30412 -7.44820 -7.01144 -6.81420 -4.49845 1.71887 1.83778 2.57129 2.84119 3.00520 3.06067 3.11480 3.34390 3.46472 3.80836 4.44968 5.03364 5.29523 5.41616 5.80596 5.84107 5.93162 6.12836 6.19398 6.39734 6.45637 6.58761 6.77113 6.96750 7.00889 7.09056 7.37899 7.61180 7.64131 7.88646 8.24704 8.30025 8.57468 8.59741 9.96646 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.017693 B = 0.011201 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.154644 B = 2499.284116 C = 3993.361442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.141 4.141 3 C -0.057 4.057 4 C -0.118 4.118 5 C -0.216 4.216 6 S 0.045 5.955 7 C -0.188 4.188 8 C 0.129 3.871 9 C -0.448 4.448 10 H 0.084 0.916 11 C 0.074 3.926 12 N -0.775 5.775 13 Si 0.913 3.087 14 H -0.257 1.257 15 H -0.271 1.271 16 H -0.268 1.268 17 C -0.100 4.100 18 C -0.160 4.160 19 C 0.381 3.619 20 O -0.475 6.475 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.127 0.873 25 H 0.150 0.850 26 H 0.287 0.713 27 H 0.138 0.862 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.916 4.673 -1.562 6.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.145 4.145 3 C -0.064 4.064 4 C -0.150 4.150 5 C -0.349 4.349 6 S 0.308 5.692 7 C -0.304 4.304 8 C 0.123 3.877 9 C -0.477 4.477 10 H 0.102 0.898 11 C -0.147 4.147 12 N -0.399 5.399 13 Si 0.736 3.264 14 H -0.181 1.181 15 H -0.196 1.196 16 H -0.193 1.193 17 C -0.123 4.123 18 C -0.163 4.163 19 C 0.241 3.759 20 O -0.350 6.350 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.145 0.855 25 H 0.167 0.833 26 H 0.098 0.902 27 H 0.155 0.845 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.136 4.634 -1.404 5.768 hybrid contribution -0.668 -0.516 -0.016 0.845 sum -3.804 4.118 -1.420 5.783 Atomic orbital electron populations 1.20553 0.92973 1.01172 1.00619 1.19048 0.93501 0.90325 1.11674 1.18691 0.91758 0.92039 1.03892 1.20872 0.99250 0.91321 1.03592 1.24850 0.97425 1.02133 1.10522 1.83634 1.06264 0.98970 1.80363 1.22794 0.95150 0.95878 1.16585 1.16934 0.93129 0.87964 0.89707 1.19582 0.91020 1.03134 1.33935 0.89767 1.25970 1.01571 0.94564 0.92551 1.69802 1.39003 1.10922 1.20132 0.86170 0.81039 0.79651 0.79536 1.18092 1.19646 1.19323 1.21526 0.90968 0.98658 1.01166 1.20107 0.95192 0.93402 1.07550 1.24048 0.94202 0.87623 0.69995 1.90453 1.74318 1.34293 1.35932 0.92851 0.92744 0.92769 0.85505 0.83252 0.90154 0.84477 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 9.31 36.01 0.34 -1.16 15 2 C -0.14 -2.92 6.00 -103.18 -0.62 -3.53 15 3 C -0.06 -1.24 5.96 -105.43 -0.63 -1.87 15 4 C -0.12 -2.16 9.78 -38.54 -0.38 -2.53 15 5 C -0.22 -3.76 11.01 28.85 0.32 -3.44 15 6 S 0.05 0.92 22.81 -107.50 -2.45 -1.54 15 7 C -0.19 -4.51 6.38 -37.46 -0.24 -4.75 15 8 C 0.13 3.34 5.58 -106.61 -0.60 2.75 15 9 C -0.45 -11.53 8.81 -37.90 -0.33 -11.86 15 10 H 0.08 2.10 7.75 -52.49 -0.41 1.70 15 11 C 0.07 1.81 5.12 -17.34 -0.09 1.72 15 12 N -0.78 -19.76 10.99 55.55 0.61 -19.15 15 13 Si 0.91 18.29 29.59 -169.99 -5.03 13.26 15 14 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 15 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 16 H -0.27 -5.32 7.11 56.52 0.40 -4.91 15 17 C -0.10 -2.56 8.20 -38.40 -0.31 -2.88 15 18 C -0.16 -3.61 5.84 -105.36 -0.62 -4.23 15 19 C 0.38 7.57 10.84 34.29 0.37 7.94 15 20 O -0.47 -10.99 17.13 5.56 0.10 -10.89 15 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.05 0.75 6.23 -51.93 -0.32 0.42 15 23 H 0.05 0.77 7.20 -51.93 -0.37 0.40 15 24 H 0.13 1.91 7.49 -52.49 -0.39 1.52 15 25 H 0.15 2.07 8.06 -52.49 -0.42 1.64 15 26 H 0.29 6.67 8.30 -40.82 -0.34 6.33 15 27 H 0.14 3.77 5.75 -52.49 -0.30 3.46 15 28 H 0.09 1.29 6.26 -52.49 -0.33 0.96 15 LS Contribution 259.86 15.07 3.92 3.92 Total: -1.00 -28.28 259.86 -7.76 -36.04 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -2.11 Total: 2.22 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -2.79 Total: -23.85 kcal Atomic # 7 Polarization: -19.76 SS G_CDS: 0.61 Total: -19.15 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.10 Total: -10.89 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.45 Total: -1.54 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.28 -7.76 -36.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396336221.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.541 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds