Wall clock time and date at job start Mon Mar 30 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40900 * 119.61077 * 2 1 4 4 C 1.45591 * 129.01017 * 359.95794 * 3 2 1 5 5 C 1.31755 * 114.89893 * 180.02562 * 4 3 2 6 6 S 1.75283 * 111.40658 * 0.02562 * 5 4 3 7 7 C 1.39650 * 119.20424 * 179.97438 * 3 2 1 8 8 C 1.42390 * 119.94712 * 359.97438 * 7 3 2 9 9 C 1.41027 * 119.99246 * 179.97438 * 8 7 3 10 10 H 1.07999 * 120.00094 * 334.34939 * 9 8 7 11 11 C 1.39910 * 120.00182 * 154.34502 * 9 8 7 12 12 N 1.30867 * 120.00093 * 342.55248 * 11 9 8 13 13 Si 1.86803 * 119.99949 * 162.54584 * 11 9 8 14 14 H 1.48497 * 109.47021 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46814 * 120.00491 * 13 11 9 16 16 H 1.48493 * 109.47201 * 240.00262 * 13 11 9 17 17 C 1.39919 * 120.01587 * 0.02562 * 8 7 3 18 18 C 1.39408 * 119.60927 * 179.97438 * 2 1 3 19 19 C 1.47011 * 119.82470 * 0.03729 * 18 2 1 20 20 O 1.21272 * 119.99874 * 179.97438 * 19 18 2 21 21 H 1.08999 * 109.47065 * 89.99623 * 1 2 3 22 22 H 1.08994 * 109.47254 * 210.00073 * 1 2 3 23 23 H 1.09004 * 109.46941 * 329.99817 * 1 2 3 24 24 H 1.07999 * 122.54455 * 0.02562 * 4 3 2 25 25 H 1.08001 * 124.29858 * 179.97438 * 5 4 3 26 26 H 0.96998 * 120.00192 * 179.97438 * 12 11 9 27 27 H 1.07998 * 120.14930 * 179.97438 * 17 8 7 28 28 H 1.08001 * 119.99983 * 359.96192 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2033 1.2250 0.0000 4 6 1.6725 2.5807 -0.0008 5 6 2.5832 3.5329 -0.0011 6 16 4.2047 2.8673 -0.0011 7 6 3.5997 1.2151 0.0005 8 6 4.3018 -0.0237 0.0016 9 6 5.7120 -0.0348 0.0016 10 1 6.2586 0.8036 -0.4040 11 6 6.4029 -1.1321 0.5272 12 7 5.7871 -1.9775 1.3137 13 14 8.2045 -1.3902 0.1061 14 1 8.6631 -0.3022 -0.7944 15 1 9.0114 -1.3737 1.3527 16 1 8.3711 -2.6997 -0.5741 17 6 3.5928 -1.2300 0.0016 18 6 2.1959 -1.2120 0.0005 19 6 1.4483 -2.4779 0.0003 20 8 2.0442 -3.5340 0.0003 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 0.6130 2.7898 -0.0012 25 1 2.3590 4.5894 -0.0021 26 1 6.2660 -2.7384 1.6777 27 1 4.1231 -2.1708 0.0020 28 1 0.3683 -2.4672 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396336221.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:35 Heat of formation + Delta-G solvation = -24.413788 kcal Electronic energy + Delta-G solvation = -14961.802955 eV Core-core repulsion = 12453.858356 eV Total energy + Delta-G solvation = -2507.944599 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.56767 -39.16147 -36.57972 -35.12009 -33.18008 -30.32837 -29.03034 -26.07123 -25.54124 -23.25470 -22.08973 -20.54698 -19.29319 -17.88533 -17.27017 -16.91225 -16.30066 -15.62739 -15.57501 -15.30408 -14.64127 -14.40456 -14.31900 -13.58518 -13.46100 -13.24813 -13.06611 -12.90670 -12.61405 -12.40193 -12.15220 -11.67689 -11.57878 -11.37251 -11.03218 -10.44882 -9.97700 -9.15149 -8.79197 -8.50152 -6.37093 -0.00223 0.28304 1.00573 1.21198 1.32265 1.47500 1.50220 1.67814 1.87446 2.13360 2.69197 3.48555 3.54331 3.99775 4.33943 4.50036 4.58555 4.62603 4.89346 4.94168 5.04645 5.11105 5.16400 5.29497 5.38047 5.45063 5.71441 5.82761 5.90421 6.14769 6.43305 6.66851 6.74902 6.79396 8.20979 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.017693 B = 0.011201 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.154644 B = 2499.284116 C = 3993.361442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.116 4.116 3 C -0.080 4.080 4 C -0.119 4.119 5 C -0.196 4.196 6 S 0.027 5.973 7 C -0.214 4.214 8 C 0.095 3.905 9 C -0.488 4.488 10 H 0.076 0.924 11 C 0.034 3.966 12 N -0.818 5.818 13 Si 0.981 3.019 14 H -0.255 1.255 15 H -0.261 1.261 16 H -0.265 1.265 17 C -0.140 4.140 18 C -0.183 4.183 19 C 0.390 3.610 20 O -0.514 6.514 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.172 0.828 25 H 0.196 0.804 26 H 0.290 0.710 27 H 0.105 0.895 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.824 6.546 -1.836 10.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.150 4.150 5 C -0.330 4.330 6 S 0.289 5.711 7 C -0.330 4.330 8 C 0.090 3.910 9 C -0.517 4.517 10 H 0.094 0.906 11 C -0.182 4.182 12 N -0.443 5.443 13 Si 0.801 3.199 14 H -0.178 1.178 15 H -0.186 1.186 16 H -0.189 1.189 17 C -0.163 4.163 18 C -0.186 4.186 19 C 0.253 3.747 20 O -0.391 6.391 21 H 0.097 0.903 22 H 0.096 0.904 23 H 0.094 0.906 24 H 0.189 0.811 25 H 0.213 0.787 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.070 6.529 -1.680 9.072 hybrid contribution -0.021 -0.919 0.047 0.921 sum -6.091 5.609 -1.633 8.440 Atomic orbital electron populations 1.20723 0.88318 1.03501 1.02912 1.19753 0.96690 0.89022 1.06546 1.19363 0.91141 0.94529 1.03675 1.21146 1.01516 0.89078 1.03247 1.25318 0.94741 1.04261 1.08631 1.83654 1.09450 0.97430 1.80530 1.23234 0.96851 0.96858 1.16037 1.17227 0.93722 0.89201 0.90895 1.19695 0.91625 1.04094 1.36334 0.90554 1.26778 1.05670 0.93904 0.91847 1.69880 1.40731 1.11863 1.21832 0.85174 0.75857 0.79419 0.79480 1.17844 1.18601 1.18938 1.21373 0.92836 0.97515 1.04622 1.20589 0.94402 0.96011 1.07572 1.24726 0.96342 0.85664 0.68001 1.90451 1.75599 1.35369 1.37677 0.90273 0.90407 0.90600 0.81075 0.78699 0.89949 0.87692 0.83238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.47 9.31 71.24 0.66 -1.81 15 2 C -0.12 -4.50 6.00 -18.93 -0.11 -4.61 15 3 C -0.08 -3.31 5.96 -20.39 -0.12 -3.43 15 4 C -0.12 -3.81 9.78 23.44 0.23 -3.58 15 5 C -0.20 -6.05 11.01 67.09 0.74 -5.32 15 6 S 0.03 1.10 22.81 -56.49 -1.29 -0.19 15 7 C -0.21 -10.41 6.38 23.64 0.15 -10.26 15 8 C 0.09 5.22 5.58 -21.15 -0.12 5.10 15 9 C -0.49 -26.94 8.81 23.36 0.21 -26.73 15 10 H 0.08 4.11 7.75 -2.91 -0.02 4.09 15 11 C 0.03 1.77 5.12 85.24 0.44 2.21 15 12 N -0.82 -44.88 10.99 21.82 0.24 -44.64 15 13 Si 0.98 39.72 29.59 68.60 2.03 41.75 15 14 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 15 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 16 H -0.26 -10.41 7.11 99.48 0.71 -9.71 15 17 C -0.14 -7.62 8.20 23.03 0.19 -7.43 15 18 C -0.18 -8.25 5.84 -20.34 -0.12 -8.37 15 19 C 0.39 14.94 10.84 70.12 0.76 15.70 15 20 O -0.51 -24.09 17.13 -3.01 -0.05 -24.14 15 21 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.08 1.63 6.23 -2.39 -0.01 1.62 15 23 H 0.08 1.65 7.20 -2.39 -0.02 1.63 15 24 H 0.17 3.96 7.49 -2.91 -0.02 3.94 15 25 H 0.20 4.22 8.06 -2.91 -0.02 4.20 15 26 H 0.29 14.49 8.30 -92.71 -0.77 13.72 15 27 H 0.11 6.29 5.75 -2.91 -0.02 6.27 15 28 H 0.15 3.83 6.26 -2.91 -0.02 3.81 15 Total: -1.00 -68.19 259.86 5.03 -63.16 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.20 Total: 12.59 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 2.90 Total: -48.52 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.24 Total: -44.64 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.05 Total: -24.14 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -1.29 Total: -0.19 kcal Total: -68.19 5.03 -63.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396336221.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.744 kcal (2) G-P(sol) polarization free energy of solvation -68.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds