Wall clock time and date at job start Mon Mar 30 2020 05:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32418 * 124.54317 * 2 1 4 4 C 1.40736 * 115.89779 * 180.02562 * 3 2 1 5 5 C 1.41328 * 127.94798 * 179.97438 * 4 3 2 6 6 C 1.38430 * 120.71891 * 180.02562 * 5 4 3 7 7 C 1.46324 * 120.38995 * 179.97438 * 6 5 4 8 8 O 1.21372 * 120.00358 * 0.02562 * 7 6 5 9 9 C 1.47068 * 119.21921 * 0.02562 * 6 5 4 10 10 C 1.40335 * 120.57879 * 180.02562 * 9 6 5 11 11 H 1.08003 * 119.99516 * 334.30968 * 10 9 6 12 12 C 1.40232 * 119.99862 * 154.31537 * 10 9 6 13 13 N 1.30675 * 120.00101 * 342.93091 * 12 10 9 14 14 Si 1.86800 * 119.99992 * 162.93649 * 12 10 9 15 15 H 1.48499 * 109.47473 * 94.64434 * 14 12 10 16 16 H 1.48504 * 109.47203 * 214.64517 * 14 12 10 17 17 H 1.48506 * 109.46951 * 334.64487 * 14 12 10 18 18 C 1.40247 * 118.84098 * 359.97313 * 9 6 5 19 19 C 1.39006 * 120.48547 * 0.04308 * 18 9 6 20 20 S 1.75415 * 124.53502 * 180.31103 * 2 1 3 21 21 H 1.09006 * 109.47075 * 90.00250 * 1 2 3 22 22 H 1.08999 * 109.47755 * 210.00012 * 1 2 3 23 23 H 1.09002 * 109.47219 * 330.00291 * 1 2 3 24 24 H 1.08007 * 122.04738 * 0.03832 * 3 2 1 25 25 H 1.08005 * 119.63696 * 0.05068 * 5 4 3 26 26 H 1.08006 * 119.99786 * 180.02562 * 7 6 5 27 27 H 0.97000 * 119.99547 * 180.02562 * 13 12 10 28 28 H 1.07993 * 119.75516 * 180.02562 * 18 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2578 1.0907 0.0000 4 6 3.6492 0.8792 -0.0006 5 6 4.6759 1.8503 -0.0012 6 6 6.0074 1.4717 -0.0022 7 6 7.0647 2.4833 -0.0034 8 8 6.7766 3.6623 -0.0031 9 6 6.3469 0.0407 -0.0033 10 6 7.6872 -0.3751 -0.0038 11 1 8.4526 0.2703 -0.4090 12 6 8.0327 -1.6285 0.5217 13 7 7.1972 -2.2633 1.3004 14 14 9.6874 -2.3905 0.1085 15 1 10.6651 -2.0602 1.1763 16 1 9.5423 -3.8651 0.0092 17 1 10.1703 -1.8522 -1.1885 18 6 5.3077 -0.9011 -0.0026 19 6 3.9807 -0.4871 -0.0019 20 16 2.5014 -1.4450 -0.0078 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.8287 2.0819 0.0006 25 1 4.4189 2.8993 -0.0005 26 1 8.1015 2.1807 -0.0047 27 1 7.4364 -3.1301 1.6642 28 1 5.5402 -1.9557 -0.0029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396336231.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:52 Heat of formation + Delta-G solvation = -16.657875 kcal Electronic energy + Delta-G solvation = -14652.612174 eV Core-core repulsion = 12145.003897 eV Total energy + Delta-G solvation = -2507.608277 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.60932 -37.33221 -35.39572 -33.44661 -30.66119 -29.74527 -27.54305 -25.05340 -23.44484 -21.20286 -20.75533 -18.62762 -17.78987 -16.57679 -15.41083 -15.32741 -14.66178 -13.92789 -13.88446 -13.50453 -13.13577 -12.89292 -12.66907 -12.46688 -12.11440 -11.92112 -11.61269 -11.39597 -11.32610 -10.93806 -10.44242 -10.12740 -9.91662 -9.71493 -9.31846 -8.70375 -8.60210 -7.48030 -7.23747 -6.86161 -4.76676 1.79754 1.82235 2.53081 2.74727 2.84405 2.89750 2.96157 3.35419 3.57862 3.58797 4.26828 5.23342 5.33164 5.56678 5.68698 5.86088 5.88218 6.08534 6.14532 6.34138 6.52144 6.57160 6.65701 6.78793 6.97009 7.09649 7.43231 7.48432 7.61943 7.66250 8.05325 8.22275 8.42459 8.54654 9.62369 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.008229 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.429340 B = 3401.729880 C = 4567.905106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.232 4.232 3 C -0.071 4.071 4 C -0.225 4.225 5 C 0.028 3.972 6 C -0.294 4.294 7 C 0.393 3.607 8 O -0.518 6.518 9 C 0.157 3.843 10 C -0.420 4.420 11 H 0.095 0.905 12 C 0.071 3.929 13 N -0.752 5.752 14 Si 0.918 3.082 15 H -0.264 1.264 16 H -0.270 1.270 17 H -0.254 1.254 18 C -0.163 4.163 19 C -0.050 4.050 20 S 0.000 6.000 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.120 0.880 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.293 0.707 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.796 -1.574 -1.377 3.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.346 4.346 3 C -0.101 4.101 4 C -0.230 4.230 5 C 0.008 3.992 6 C -0.297 4.297 7 C 0.259 3.741 8 O -0.399 6.399 9 C 0.150 3.850 10 C -0.448 4.448 11 H 0.113 0.887 12 C -0.153 4.153 13 N -0.374 5.374 14 Si 0.741 3.259 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.177 1.177 18 C -0.190 4.190 19 C -0.165 4.165 20 S 0.260 5.740 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.138 0.862 25 H 0.127 0.873 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.414 -2.669 -1.226 4.504 hybrid contribution 0.929 0.804 0.013 1.229 sum -2.485 -1.865 -1.213 3.336 Atomic orbital electron populations 1.20128 0.89241 1.01826 1.01386 1.23348 0.98531 0.95629 1.17118 1.19728 0.92393 0.97799 1.00138 1.17661 0.92440 0.92496 1.20359 1.20890 0.91219 0.96893 0.90213 1.21272 0.93722 0.94646 1.20058 1.23472 0.94308 0.87001 0.69276 1.90411 1.87684 1.21382 1.40421 1.18358 0.92822 0.88696 0.85115 1.19752 0.93719 1.00300 1.31000 0.88669 1.26213 1.00221 0.96418 0.92453 1.69747 1.36092 1.13313 1.18231 0.86100 0.80295 0.78856 0.80688 1.18848 1.19454 1.17688 1.20573 0.88004 0.99901 1.10489 1.22453 0.96470 0.94843 1.02746 1.83706 0.97314 1.09699 1.83241 0.92128 0.92306 0.91749 0.86242 0.87310 0.89513 0.89541 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.33 36.00 0.37 -0.58 15 2 C -0.23 -4.35 6.42 -36.23 -0.23 -4.58 15 3 C -0.07 -1.43 9.95 -40.56 -0.40 -1.83 15 4 C -0.22 -5.13 5.86 -106.89 -0.63 -5.76 15 5 C 0.03 0.64 9.59 -38.34 -0.37 0.27 15 6 C -0.29 -6.83 6.03 -103.00 -0.62 -7.45 15 7 C 0.39 8.38 11.02 33.98 0.37 8.76 15 8 O -0.52 -12.00 17.13 5.48 0.09 -11.91 15 9 C 0.16 3.78 5.71 -104.77 -0.60 3.18 15 10 C -0.42 -9.47 8.48 -38.04 -0.32 -9.79 15 11 H 0.10 1.95 6.67 -52.48 -0.35 1.60 15 12 C 0.07 1.53 5.15 -17.29 -0.09 1.44 15 13 N -0.75 -17.00 10.99 55.56 0.61 -16.39 15 14 Si 0.92 15.83 29.59 -169.99 -5.03 10.80 15 15 H -0.26 -4.50 7.11 56.52 0.40 -4.10 15 16 H -0.27 -4.62 7.11 56.52 0.40 -4.22 15 17 H -0.25 -4.33 7.11 56.52 0.40 -3.93 15 18 C -0.16 -3.99 8.71 -38.54 -0.34 -4.33 15 19 C -0.05 -1.18 6.44 -38.41 -0.25 -1.42 15 20 S 0.00 0.01 23.26 -107.50 -2.50 -2.49 15 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.12 2.08 8.06 -52.48 -0.42 1.66 15 25 H 0.11 2.34 7.60 -52.48 -0.40 1.94 15 26 H 0.09 1.63 6.67 -52.48 -0.35 1.28 15 27 H 0.29 5.93 8.29 -40.82 -0.34 5.59 15 28 H 0.13 3.13 6.20 -52.49 -0.33 2.81 15 LS Contribution 263.90 15.07 3.98 3.98 Total: -1.00 -26.18 263.90 -8.20 -34.38 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -2.25 Total: 3.73 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -3.10 Total: -22.09 kcal Atomic # 7 Polarization: -17.00 SS G_CDS: 0.61 Total: -16.39 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 15.83 SS G_CDS: -5.03 Total: 10.80 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.50 Total: -2.49 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.18 -8.20 -34.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396336231.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.723 kcal (2) G-P(sol) polarization free energy of solvation -26.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds