Wall clock time and date at job start Mon Mar 30 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32418 * 124.54317 * 2 1 4 4 C 1.40736 * 115.89779 * 180.02562 * 3 2 1 5 5 C 1.41328 * 127.94798 * 179.97438 * 4 3 2 6 6 C 1.38430 * 120.71891 * 180.02562 * 5 4 3 7 7 C 1.46324 * 120.38995 * 179.97438 * 6 5 4 8 8 O 1.21372 * 120.00358 * 0.02562 * 7 6 5 9 9 C 1.47068 * 119.21921 * 0.02562 * 6 5 4 10 10 C 1.40335 * 120.57879 * 180.02562 * 9 6 5 11 11 H 1.08003 * 119.99516 * 334.30968 * 10 9 6 12 12 C 1.40232 * 119.99862 * 154.31537 * 10 9 6 13 13 N 1.30675 * 120.00101 * 342.93091 * 12 10 9 14 14 Si 1.86800 * 119.99992 * 162.93649 * 12 10 9 15 15 H 1.48499 * 109.47473 * 94.64434 * 14 12 10 16 16 H 1.48504 * 109.47203 * 214.64517 * 14 12 10 17 17 H 1.48506 * 109.46951 * 334.64487 * 14 12 10 18 18 C 1.40247 * 118.84098 * 359.97313 * 9 6 5 19 19 C 1.39006 * 120.48547 * 0.04308 * 18 9 6 20 20 S 1.75415 * 124.53502 * 180.31103 * 2 1 3 21 21 H 1.09006 * 109.47075 * 90.00250 * 1 2 3 22 22 H 1.08999 * 109.47755 * 210.00012 * 1 2 3 23 23 H 1.09002 * 109.47219 * 330.00291 * 1 2 3 24 24 H 1.08007 * 122.04738 * 0.03832 * 3 2 1 25 25 H 1.08005 * 119.63696 * 0.05068 * 5 4 3 26 26 H 1.08006 * 119.99786 * 180.02562 * 7 6 5 27 27 H 0.97000 * 119.99547 * 180.02562 * 13 12 10 28 28 H 1.07993 * 119.75516 * 180.02562 * 18 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2578 1.0907 0.0000 4 6 3.6492 0.8792 -0.0006 5 6 4.6759 1.8503 -0.0012 6 6 6.0074 1.4717 -0.0022 7 6 7.0647 2.4833 -0.0034 8 8 6.7766 3.6623 -0.0031 9 6 6.3469 0.0407 -0.0033 10 6 7.6872 -0.3751 -0.0038 11 1 8.4526 0.2703 -0.4090 12 6 8.0327 -1.6285 0.5217 13 7 7.1972 -2.2633 1.3004 14 14 9.6874 -2.3905 0.1085 15 1 10.6651 -2.0602 1.1763 16 1 9.5423 -3.8651 0.0092 17 1 10.1703 -1.8522 -1.1885 18 6 5.3077 -0.9011 -0.0026 19 6 3.9807 -0.4871 -0.0019 20 16 2.5014 -1.4450 -0.0078 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.8287 2.0819 0.0006 25 1 4.4189 2.8993 -0.0005 26 1 8.1015 2.1807 -0.0047 27 1 7.4364 -3.1301 1.6642 28 1 5.5402 -1.9557 -0.0029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396336231.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:51 Heat of formation + Delta-G solvation = -29.062679 kcal Electronic energy + Delta-G solvation = -14653.150087 eV Core-core repulsion = 12145.003897 eV Total energy + Delta-G solvation = -2508.146190 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.32529 -39.04139 -37.02629 -35.05284 -32.22160 -31.49382 -29.06578 -26.68875 -25.12736 -22.80190 -22.46655 -20.26464 -19.48833 -18.23196 -17.05042 -16.93979 -16.32807 -15.54051 -15.46496 -15.06845 -14.66443 -14.53390 -14.17470 -14.04885 -13.64584 -13.45359 -13.09988 -12.92057 -12.74705 -12.40027 -11.95854 -11.76051 -11.49772 -11.39051 -10.94275 -10.43874 -10.32591 -9.16531 -8.87252 -8.54818 -6.49612 0.03652 0.19540 0.89710 1.31953 1.32830 1.42817 1.58113 1.74284 1.88264 2.13875 2.61574 3.47197 3.74236 4.10218 4.19947 4.50778 4.56296 4.65577 4.81119 4.83652 4.87506 4.99553 5.10253 5.19417 5.26854 5.44544 5.70802 5.75524 5.90247 5.95968 6.32540 6.51704 6.68521 6.83177 8.03425 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.008229 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.429340 B = 3401.729880 C = 4567.905106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.214 4.214 3 C -0.095 4.095 4 C -0.238 4.238 5 C 0.015 3.985 6 C -0.313 4.313 7 C 0.400 3.600 8 O -0.538 6.538 9 C 0.133 3.867 10 C -0.438 4.438 11 H 0.112 0.888 12 C 0.036 3.964 13 N -0.786 5.786 14 Si 0.991 3.009 15 H -0.256 1.256 16 H -0.268 1.268 17 H -0.248 1.248 18 C -0.187 4.187 19 C -0.078 4.078 20 S 0.006 5.994 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.147 0.853 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.301 0.699 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 -1.681 -1.605 3.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.328 4.328 3 C -0.124 4.124 4 C -0.243 4.243 5 C -0.005 4.005 6 C -0.316 4.316 7 C 0.268 3.732 8 O -0.420 6.420 9 C 0.126 3.874 10 C -0.464 4.464 11 H 0.130 0.870 12 C -0.186 4.186 13 N -0.408 5.408 14 Si 0.810 3.190 15 H -0.181 1.181 16 H -0.192 1.192 17 H -0.171 1.171 18 C -0.213 4.213 19 C -0.193 4.193 20 S 0.266 5.734 21 H 0.098 0.902 22 H 0.089 0.911 23 H 0.105 0.895 24 H 0.164 0.836 25 H 0.135 0.865 26 H 0.136 0.864 27 H 0.113 0.887 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.709 -2.769 -1.452 4.850 hybrid contribution 0.876 0.791 0.104 1.185 sum -2.833 -1.977 -1.348 3.708 Atomic orbital electron populations 1.20307 0.85566 1.03565 1.03164 1.23993 1.00729 0.94062 1.13994 1.19940 0.91197 0.99596 1.01641 1.18057 0.94021 0.92185 1.20071 1.21095 0.91501 0.97393 0.90499 1.21564 0.94562 0.94913 1.20545 1.23739 0.95125 0.86158 0.68178 1.90397 1.88076 1.22025 1.41512 1.18655 0.93656 0.89117 0.85944 1.20139 0.93596 1.01544 1.31159 0.86995 1.27114 1.03681 0.96217 0.91551 1.69797 1.38095 1.13959 1.18951 0.85022 0.75586 0.77763 0.80619 1.18062 1.19247 1.17085 1.20555 0.88992 0.99370 1.12409 1.22793 0.97369 0.96161 1.02942 1.83616 0.96290 1.10571 1.82963 0.90188 0.91087 0.89469 0.83593 0.86539 0.86373 0.88735 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 10.33 71.24 0.74 -0.93 15 2 C -0.21 -7.56 6.42 24.57 0.16 -7.40 15 3 C -0.10 -3.68 9.95 21.77 0.22 -3.46 15 4 C -0.24 -10.96 5.86 -21.34 -0.13 -11.08 15 5 C 0.02 0.71 9.59 23.08 0.22 0.93 15 6 C -0.31 -14.77 6.03 -18.81 -0.11 -14.89 15 7 C 0.40 16.97 11.02 69.92 0.77 17.74 15 8 O -0.54 -24.74 17.13 -3.32 -0.06 -24.80 15 9 C 0.13 6.57 5.71 -19.96 -0.11 6.45 15 10 C -0.44 -19.80 8.48 23.27 0.20 -19.60 15 11 H 0.11 4.49 6.67 -2.91 -0.02 4.47 15 12 C 0.04 1.53 5.15 85.35 0.44 1.97 15 13 N -0.79 -36.11 10.99 21.88 0.24 -35.86 15 14 Si 0.99 31.62 29.59 68.60 2.03 33.65 15 15 H -0.26 -7.85 7.11 99.48 0.71 -7.14 15 16 H -0.27 -8.39 7.11 99.48 0.71 -7.68 15 17 H -0.25 -7.62 7.11 99.48 0.71 -6.91 15 18 C -0.19 -9.47 8.71 22.94 0.20 -9.28 15 19 C -0.08 -3.73 6.44 23.03 0.15 -3.58 15 20 S 0.01 0.22 23.26 -56.49 -1.31 -1.09 15 21 H 0.08 1.73 8.14 -2.38 -0.02 1.71 15 22 H 0.07 1.61 8.14 -2.39 -0.02 1.59 15 23 H 0.09 1.82 8.14 -2.39 -0.02 1.80 15 24 H 0.15 4.75 8.06 -2.91 -0.02 4.73 15 25 H 0.12 5.06 7.60 -2.91 -0.02 5.04 15 26 H 0.12 4.28 6.67 -2.91 -0.02 4.26 15 27 H 0.30 12.32 8.29 -92.71 -0.77 11.55 15 28 H 0.11 5.82 6.20 -2.91 -0.02 5.80 15 Total: -1.00 -56.84 263.90 4.83 -52.01 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 1.19 Total: 19.21 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 2.73 Total: -43.12 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.24 Total: -35.86 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.06 Total: -24.80 kcal Atomic # 14 Polarization: 31.62 SS G_CDS: 2.03 Total: 33.65 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -1.31 Total: -1.09 kcal Total: -56.84 4.83 -52.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396336231.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.952 kcal (2) G-P(sol) polarization free energy of solvation -56.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds