Wall clock time and date at job start Mon Mar 30 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35912 * 119.72919 * 2 1 4 4 C 1.40033 * 121.04939 * 179.97438 * 3 2 1 5 5 C 1.46524 * 119.51065 * 179.97438 * 4 3 2 6 6 O 1.21360 * 119.99802 * 179.97438 * 5 4 3 7 7 C 1.41299 * 120.97584 * 359.97438 * 4 3 2 8 8 S 1.76013 * 130.76273 * 180.02562 * 7 4 3 9 9 C 1.75517 * 91.49415 * 179.97438 * 8 7 4 10 10 C 1.32744 * 110.63972 * 0.02562 * 9 8 7 11 11 C 1.39617 * 119.86524 * 359.97438 * 7 4 3 12 12 C 1.40693 * 119.72574 * 179.72099 * 2 1 3 13 13 C 1.40130 * 120.24051 * 0.02685 * 12 2 1 14 14 H 1.08007 * 119.99589 * 315.96341 * 13 12 2 15 15 C 1.40444 * 120.00369 * 135.96920 * 13 12 2 16 16 N 1.30552 * 120.00266 * 153.83985 * 15 13 12 17 17 Si 1.86798 * 119.99668 * 333.83297 * 15 13 12 18 18 H 1.48502 * 109.47068 * 95.22642 * 17 15 13 19 19 H 1.48505 * 109.47025 * 215.22744 * 17 15 13 20 20 H 1.48503 * 109.47530 * 335.22422 * 17 15 13 21 21 H 1.08999 * 109.47518 * 92.66981 * 1 2 3 22 22 H 1.09004 * 109.47360 * 332.67038 * 1 2 3 23 23 H 1.09002 * 109.47363 * 212.67295 * 1 2 3 24 24 H 1.08004 * 119.47803 * 359.97438 * 3 2 1 25 25 H 1.08001 * 119.99807 * 359.97438 * 5 4 3 26 26 H 1.07997 * 124.68049 * 179.97438 * 9 8 7 27 27 H 1.08006 * 122.09486 * 179.97438 * 10 9 8 28 28 H 0.97000 * 119.99850 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1802 0.0000 4 6 3.5809 1.2125 0.0005 5 6 4.2731 2.5039 -0.0001 6 8 5.4861 2.5422 0.0009 7 6 4.3359 0.0181 0.0016 8 16 6.0768 -0.2411 0.0031 9 6 5.8638 -1.9832 0.0045 10 6 4.5739 -2.2969 0.0033 11 6 3.6839 -1.2165 0.0027 12 6 2.2046 -1.2218 0.0059 13 6 1.5032 -2.4349 0.0113 14 1 0.6505 -2.5628 0.6618 15 6 1.9091 -3.4845 -0.8290 16 7 1.6417 -4.7206 -0.5053 17 14 2.8314 -3.1117 -2.4101 18 1 4.2926 -3.2194 -2.1680 19 1 2.4302 -4.0842 -3.4583 20 1 2.5046 -1.7350 -2.8611 21 1 -0.3634 -0.0479 -1.0265 22 1 -0.3634 0.9130 0.4718 23 1 -0.3634 -0.8651 0.5548 24 1 1.6281 2.1080 -0.0004 25 1 3.7038 3.4217 -0.0013 26 1 6.6707 -2.7010 0.0053 27 1 4.2325 -3.3216 0.0034 28 1 1.9217 -5.4455 -1.0859 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396336260.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:12 Heat of formation + Delta-G solvation = -17.323578 kcal Electronic energy + Delta-G solvation = -15257.278835 eV Core-core repulsion = 12749.641691 eV Total energy + Delta-G solvation = -2507.637144 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47937 -39.15448 -36.42714 -35.82460 -33.06502 -31.08156 -28.32564 -27.07349 -24.51531 -24.07455 -21.47022 -20.48231 -19.96520 -17.97467 -17.24647 -17.01122 -16.24068 -15.59469 -15.42057 -15.23818 -15.08238 -14.40238 -14.31713 -14.17191 -13.71769 -13.23068 -13.14048 -12.99032 -12.61336 -12.23610 -12.08580 -11.84424 -11.48644 -11.41935 -11.24181 -10.32687 -9.95391 -9.21618 -9.14418 -8.60790 -6.59484 -0.10504 0.22084 0.89376 1.16633 1.24354 1.32381 1.35908 1.50683 1.89951 2.02422 2.49698 3.25470 3.76994 4.04410 4.24615 4.50017 4.53923 4.67556 4.72217 4.98075 5.02747 5.11509 5.13625 5.21475 5.35738 5.48236 5.65444 5.69994 5.84947 6.04662 6.14812 6.45591 6.64035 6.86974 7.81995 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022586 B = 0.012023 C = 0.008789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.423330 B = 2328.406386 C = 3184.990619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.220 4.220 3 C 0.007 3.993 4 C -0.316 4.316 5 C 0.380 3.620 6 O -0.533 6.533 7 C -0.064 4.064 8 S 0.088 5.912 9 C -0.279 4.279 10 C -0.092 4.092 11 C -0.209 4.209 12 C 0.131 3.869 13 C -0.435 4.435 14 H 0.095 0.905 15 C 0.078 3.922 16 N -0.788 5.788 17 Si 0.921 3.079 18 H -0.245 1.245 19 H -0.260 1.260 20 H -0.265 1.265 21 H 0.057 0.943 22 H 0.077 0.923 23 H 0.049 0.951 24 H 0.159 0.841 25 H 0.139 0.861 26 H 0.176 0.824 27 H 0.122 0.878 28 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.516 5.397 -1.671 5.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.223 4.223 3 C -0.013 4.013 4 C -0.324 4.324 5 C 0.247 3.753 6 O -0.415 6.415 7 C -0.180 4.180 8 S 0.351 5.649 9 C -0.412 4.412 10 C -0.121 4.121 11 C -0.217 4.217 12 C 0.126 3.874 13 C -0.461 4.461 14 H 0.113 0.887 15 C -0.146 4.146 16 N -0.410 5.410 17 Si 0.743 3.257 18 H -0.169 1.169 19 H -0.184 1.184 20 H -0.189 1.189 21 H 0.076 0.924 22 H 0.096 0.904 23 H 0.068 0.932 24 H 0.176 0.824 25 H 0.155 0.845 26 H 0.193 0.807 27 H 0.139 0.861 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.385 5.924 -1.676 6.310 hybrid contribution -0.952 -1.603 -0.471 1.923 sum 0.432 4.320 -2.148 4.844 Atomic orbital electron populations 1.20424 0.89852 1.01924 1.01382 1.19783 0.97051 0.92029 1.13463 1.20736 0.91351 0.98283 0.90941 1.19818 0.94435 0.92901 1.25233 1.24137 0.88818 0.92918 0.69397 1.90426 1.19185 1.90605 1.41308 1.23035 0.96225 0.97254 1.01513 1.84021 1.03179 0.99794 1.77908 1.25362 0.99832 0.99779 1.16252 1.19811 0.92645 0.99116 1.00534 1.19459 0.94574 0.91347 1.16301 1.18788 0.88377 0.93840 0.86397 1.19578 1.12562 0.94786 1.19161 0.88747 1.26658 0.92979 0.93529 1.01396 1.69629 1.33638 1.01074 1.36616 0.86160 0.81116 0.80044 0.78414 1.16861 1.18429 1.18891 0.92424 0.90368 0.93227 0.82403 0.84459 0.80662 0.86064 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.59 9.55 71.24 0.68 -1.91 15 2 C -0.22 -8.81 5.88 -19.81 -0.12 -8.92 15 3 C 0.01 0.25 9.22 22.16 0.20 0.45 15 4 C -0.32 -12.61 5.90 -19.93 -0.12 -12.72 15 5 C 0.38 13.09 11.39 69.98 0.80 13.89 15 6 O -0.53 -22.06 15.73 -3.28 -0.05 -22.12 15 7 C -0.06 -2.91 6.33 23.36 0.15 -2.76 15 8 S 0.09 3.73 21.38 -56.49 -1.21 2.52 15 9 C -0.28 -11.47 11.12 66.64 0.74 -10.73 15 10 C -0.09 -4.19 6.66 21.52 0.14 -4.04 15 11 C -0.21 -9.99 4.77 -19.95 -0.10 -10.08 15 12 C 0.13 6.14 4.75 -19.65 -0.09 6.05 15 13 C -0.44 -21.02 8.38 23.27 0.20 -20.82 15 14 H 0.09 4.72 7.01 -2.91 -0.02 4.70 15 15 C 0.08 3.66 4.21 85.42 0.36 4.02 15 16 N -0.79 -36.94 13.91 21.91 0.30 -36.64 15 17 Si 0.92 39.05 24.80 68.60 1.70 40.75 15 18 H -0.24 -10.40 5.88 99.48 0.58 -9.81 15 19 H -0.26 -10.05 7.11 99.48 0.71 -9.35 15 20 H -0.26 -11.99 7.11 99.48 0.71 -11.28 15 21 H 0.06 1.80 8.14 -2.39 -0.02 1.78 15 22 H 0.08 1.99 8.05 -2.39 -0.02 1.98 15 23 H 0.05 1.73 6.58 -2.39 -0.02 1.72 15 24 H 0.16 3.93 8.05 -2.91 -0.02 3.90 15 25 H 0.14 3.18 8.06 -2.91 -0.02 3.16 15 26 H 0.18 5.99 8.06 -2.91 -0.02 5.97 15 27 H 0.12 5.59 6.04 -2.91 -0.02 5.57 15 28 H 0.30 12.76 8.29 -92.71 -0.77 11.99 15 Total: -1.00 -57.39 252.35 4.66 -52.73 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.07 Total: 10.32 kcal Atomic # 6 Polarization: -50.42 SS G_CDS: 2.85 Total: -47.57 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.30 Total: -36.64 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.70 Total: 40.75 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.21 Total: 2.52 kcal Total: -57.39 4.66 -52.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396336260.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.410 kcal (2) G-P(sol) polarization free energy of solvation -57.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds