Wall clock time and date at job start Mon Mar 30 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.31622 * 122.54006 * 2 1 4 4 S 1.75266 * 111.51650 * 180.26682 * 3 2 1 5 5 C 1.75981 * 92.24123 * 359.97438 * 4 3 2 6 6 C 1.40084 * 109.61727 * 0.02562 * 5 4 3 7 7 C 1.40405 * 119.23404 * 180.02562 * 6 5 4 8 8 C 1.40070 * 120.54320 * 359.97415 * 7 6 5 9 9 C 1.41383 * 119.93543 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00000 * 24.80873 * 9 8 7 11 11 C 1.39836 * 119.99962 * 204.81428 * 9 8 7 12 12 N 1.30905 * 120.00169 * 18.02647 * 11 9 8 13 13 Si 1.86801 * 120.00347 * 198.02780 * 11 9 8 14 14 H 1.48502 * 109.47099 * 59.99578 * 13 11 9 15 15 H 1.48491 * 109.47659 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47083 * 300.00133 * 13 11 9 17 17 C 1.40656 * 120.12839 * 0.02562 * 8 7 6 18 18 C 1.38682 * 119.75211 * 0.02562 * 17 8 7 19 19 C 1.46823 * 119.86854 * 179.97438 * 18 17 8 20 20 O 1.21299 * 120.00038 * 359.97438 * 19 18 17 21 21 H 1.08999 * 109.47406 * 269.70986 * 1 2 3 22 22 H 1.09001 * 109.46928 * 29.71654 * 1 2 3 23 23 H 1.09002 * 109.46534 * 149.71323 * 1 2 3 24 24 H 1.08003 * 124.24342 * 0.23926 * 3 2 1 25 25 H 1.07999 * 119.72530 * 179.97438 * 7 6 5 26 26 H 0.97002 * 120.00576 * 179.97438 * 12 11 9 27 27 H 1.07999 * 120.12727 * 179.97438 * 17 8 7 28 28 H 1.08001 * 120.00358 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2150 1.1096 0.0000 4 16 3.9353 0.7745 -0.0076 5 6 3.6666 -0.9647 -0.0101 6 6 2.2907 -1.2280 -0.0057 7 6 1.8476 -2.5603 -0.0063 8 6 2.7676 -3.6165 -0.0117 9 6 2.3071 -4.9533 -0.0127 10 1 1.3271 -5.1865 -0.4021 11 6 3.1205 -5.9733 0.4906 12 7 4.1306 -5.6806 1.2701 13 14 2.7658 -7.7538 0.0506 14 1 2.8456 -7.9250 -1.4223 15 1 3.7659 -8.6344 0.7058 16 1 1.4040 -8.1173 0.5180 17 6 4.1486 -3.3498 -0.0161 18 6 4.5961 -2.0372 -0.0145 19 6 6.0371 -1.7559 -0.0185 20 8 6.8336 -2.6707 -0.0227 21 1 -0.3634 -0.0052 1.0276 22 1 -0.3633 0.8925 -0.5094 23 1 -0.3632 -0.8874 -0.5183 24 1 1.7892 2.1022 0.0037 25 1 0.7886 -2.7724 -0.0025 26 1 4.6946 -6.3882 1.6196 27 1 4.8579 -4.1642 -0.0198 28 1 6.3879 -0.7344 -0.0177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396336673.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:09 Heat of formation + Delta-G solvation = -11.254336 kcal Electronic energy + Delta-G solvation = -14790.280950 eV Core-core repulsion = 12282.906988 eV Total energy + Delta-G solvation = -2507.373962 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.82510 -37.64054 -35.42240 -33.32040 -30.54297 -29.01151 -27.54876 -25.54281 -23.63389 -21.86056 -20.32124 -18.56927 -17.50432 -16.59444 -15.47853 -15.30497 -14.59801 -14.18978 -13.83919 -13.68617 -13.33048 -13.24151 -12.62420 -12.56149 -11.91598 -11.68185 -11.43663 -11.18549 -11.04520 -10.86135 -10.33872 -10.25771 -10.03968 -9.94827 -9.27743 -8.93045 -8.44932 -7.52571 -7.08085 -6.85551 -4.54946 1.58543 1.87655 2.40368 2.79905 2.84083 2.99245 3.01216 3.16728 3.54833 3.79314 4.38117 5.00547 5.27256 5.35183 5.53967 5.78993 5.95228 5.99941 6.09546 6.30209 6.48839 6.59795 6.69395 6.86790 6.98650 7.13908 7.29749 7.41516 7.66383 7.89229 8.16209 8.25032 8.56831 8.61742 9.96452 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024712 B = 0.008201 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.770859 B = 3413.357639 C = 4457.980956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.081 4.081 3 C -0.212 4.212 4 S 0.008 5.992 5 C -0.190 4.190 6 C -0.046 4.046 7 C -0.185 4.185 8 C 0.094 3.906 9 C -0.452 4.452 10 H 0.085 0.915 11 C 0.072 3.928 12 N -0.785 5.785 13 Si 0.915 3.085 14 H -0.261 1.261 15 H -0.276 1.276 16 H -0.263 1.263 17 C -0.041 4.041 18 C -0.159 4.159 19 C 0.383 3.617 20 O -0.473 6.473 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.151 0.849 25 H 0.103 0.897 26 H 0.288 0.712 27 H 0.142 0.858 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 6.531 -1.586 7.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.345 4.345 4 S 0.270 5.730 5 C -0.305 4.305 6 C -0.052 4.052 7 C -0.208 4.208 8 C 0.090 3.910 9 C -0.481 4.481 10 H 0.103 0.897 11 C -0.147 4.147 12 N -0.409 5.409 13 Si 0.739 3.261 14 H -0.186 1.186 15 H -0.201 1.201 16 H -0.188 1.188 17 C -0.061 4.061 18 C -0.165 4.165 19 C 0.244 3.756 20 O -0.348 6.348 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.169 0.831 25 H 0.121 0.879 26 H 0.100 0.900 27 H 0.160 0.840 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.419 6.898 -1.436 7.188 hybrid contribution -1.457 -1.439 -0.006 2.047 sum -2.876 5.460 -1.441 6.337 Atomic orbital electron populations 1.20474 0.90605 1.02155 1.01873 1.19786 0.96195 0.91723 1.01751 1.24410 0.96338 1.01107 1.12641 1.83313 1.05695 1.01295 1.82744 1.22012 0.96033 0.93877 1.18543 1.18773 0.90601 0.93135 1.02654 1.20841 0.98176 0.89385 1.12350 1.17415 0.90828 0.93137 0.89579 1.19564 1.02603 0.90718 1.35200 0.89669 1.26002 0.93847 1.02411 0.92483 1.69774 1.13603 1.36538 1.21022 0.86232 0.79322 0.80382 0.80148 1.18567 1.20094 1.18775 1.21955 0.96921 0.93817 0.93445 1.19832 0.93306 0.93056 1.10267 1.23817 0.88425 0.93200 0.70205 1.90465 1.57935 1.50210 1.36239 0.91559 0.92203 0.91362 0.83147 0.87890 0.90031 0.84040 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 10.02 36.01 0.36 -0.96 15 2 C -0.08 -1.47 5.97 -103.52 -0.62 -2.09 15 3 C -0.21 -3.53 10.73 28.87 0.31 -3.22 15 4 S 0.01 0.15 22.65 -107.50 -2.44 -2.29 15 5 C -0.19 -4.15 6.39 -37.48 -0.24 -4.39 15 6 C -0.05 -1.00 6.00 -105.42 -0.63 -1.63 15 7 C -0.18 -4.29 9.48 -38.08 -0.36 -4.65 15 8 C 0.09 2.38 5.55 -107.10 -0.59 1.78 15 9 C -0.45 -11.24 9.02 -37.79 -0.34 -11.58 15 10 H 0.09 2.00 7.91 -52.49 -0.41 1.58 15 11 C 0.07 1.73 5.12 -17.35 -0.09 1.64 15 12 N -0.79 -19.74 10.97 55.54 0.61 -19.13 15 13 Si 0.92 17.85 29.60 -169.99 -5.03 12.82 15 14 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 15 H -0.28 -5.30 7.11 56.52 0.40 -4.90 15 16 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 17 C -0.04 -1.04 8.19 -38.51 -0.32 -1.35 15 18 C -0.16 -3.69 5.88 -104.85 -0.62 -4.31 15 19 C 0.38 8.05 11.29 34.20 0.39 8.44 15 20 O -0.47 -11.18 17.11 5.54 0.09 -11.08 15 21 H 0.07 0.89 8.14 -51.93 -0.42 0.46 15 22 H 0.06 0.71 8.11 -51.93 -0.42 0.29 15 23 H 0.07 0.98 7.56 -51.93 -0.39 0.59 15 24 H 0.15 2.01 8.06 -52.48 -0.42 1.59 15 25 H 0.10 2.21 7.60 -52.49 -0.40 1.81 15 26 H 0.29 6.66 8.30 -40.82 -0.34 6.32 15 27 H 0.14 3.81 5.70 -52.49 -0.30 3.52 15 28 H 0.08 1.39 7.68 -52.49 -0.40 0.99 15 LS Contribution 264.38 15.07 3.98 3.98 Total: -1.00 -27.22 264.38 -7.84 -35.06 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -2.31 Total: 2.97 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -2.75 Total: -22.33 kcal Atomic # 7 Polarization: -19.74 SS G_CDS: 0.61 Total: -19.13 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.44 Total: -2.29 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.22 -7.84 -35.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396336673.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.805 kcal (2) G-P(sol) polarization free energy of solvation -27.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds