Wall clock time and date at job start Mon Mar 30 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.31622 * 122.54006 * 2 1 4 4 S 1.75266 * 111.51650 * 180.26682 * 3 2 1 5 5 C 1.75981 * 92.24123 * 359.97438 * 4 3 2 6 6 C 1.40084 * 109.61727 * 0.02562 * 5 4 3 7 7 C 1.40405 * 119.23404 * 180.02562 * 6 5 4 8 8 C 1.40070 * 120.54320 * 359.97415 * 7 6 5 9 9 C 1.41383 * 119.93543 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00000 * 24.80873 * 9 8 7 11 11 C 1.39836 * 119.99962 * 204.81428 * 9 8 7 12 12 N 1.30905 * 120.00169 * 18.02647 * 11 9 8 13 13 Si 1.86801 * 120.00347 * 198.02780 * 11 9 8 14 14 H 1.48502 * 109.47099 * 59.99578 * 13 11 9 15 15 H 1.48491 * 109.47659 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47083 * 300.00133 * 13 11 9 17 17 C 1.40656 * 120.12839 * 0.02562 * 8 7 6 18 18 C 1.38682 * 119.75211 * 0.02562 * 17 8 7 19 19 C 1.46823 * 119.86854 * 179.97438 * 18 17 8 20 20 O 1.21299 * 120.00038 * 359.97438 * 19 18 17 21 21 H 1.08999 * 109.47406 * 269.70986 * 1 2 3 22 22 H 1.09001 * 109.46928 * 29.71654 * 1 2 3 23 23 H 1.09002 * 109.46534 * 149.71323 * 1 2 3 24 24 H 1.08003 * 124.24342 * 0.23926 * 3 2 1 25 25 H 1.07999 * 119.72530 * 179.97438 * 7 6 5 26 26 H 0.97002 * 120.00576 * 179.97438 * 12 11 9 27 27 H 1.07999 * 120.12727 * 179.97438 * 17 8 7 28 28 H 1.08001 * 120.00358 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2150 1.1096 0.0000 4 16 3.9353 0.7745 -0.0076 5 6 3.6666 -0.9647 -0.0101 6 6 2.2907 -1.2280 -0.0057 7 6 1.8476 -2.5603 -0.0063 8 6 2.7676 -3.6165 -0.0117 9 6 2.3071 -4.9533 -0.0127 10 1 1.3271 -5.1865 -0.4021 11 6 3.1205 -5.9733 0.4906 12 7 4.1306 -5.6806 1.2701 13 14 2.7658 -7.7538 0.0506 14 1 2.8456 -7.9250 -1.4223 15 1 3.7659 -8.6344 0.7058 16 1 1.4040 -8.1173 0.5180 17 6 4.1486 -3.3498 -0.0161 18 6 4.5961 -2.0372 -0.0145 19 6 6.0371 -1.7559 -0.0185 20 8 6.8336 -2.6707 -0.0227 21 1 -0.3634 -0.0052 1.0276 22 1 -0.3633 0.8925 -0.5094 23 1 -0.3632 -0.8874 -0.5183 24 1 1.7892 2.1022 0.0037 25 1 0.7886 -2.7724 -0.0025 26 1 4.6946 -6.3882 1.6196 27 1 4.8579 -4.1642 -0.0198 28 1 6.3879 -0.7344 -0.0177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396336673.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:08 Heat of formation + Delta-G solvation = -25.303706 kcal Electronic energy + Delta-G solvation = -14790.890177 eV Core-core repulsion = 12282.906988 eV Total energy + Delta-G solvation = -2507.983189 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55990 -39.33284 -37.04941 -35.02540 -32.33373 -30.59906 -28.92976 -27.31348 -25.34649 -23.51462 -22.01214 -20.17671 -19.15156 -18.24236 -17.19075 -17.03928 -16.27705 -15.83954 -15.39805 -15.38751 -14.96917 -14.65655 -14.16778 -14.06575 -13.49142 -13.13075 -12.96107 -12.78189 -12.61485 -12.40172 -12.01716 -11.92770 -11.64027 -11.52997 -11.00250 -10.66075 -10.13309 -9.23172 -8.81358 -8.44357 -6.40666 -0.16508 0.28415 0.91206 1.17500 1.31375 1.36972 1.49528 1.57407 1.87883 2.15807 2.61164 3.37250 3.50108 3.90018 4.16134 4.44925 4.54171 4.65609 4.77659 4.86852 4.90848 4.96334 5.14632 5.22394 5.37000 5.41647 5.50134 5.79071 5.86498 6.09306 6.39915 6.46133 6.75272 6.77951 8.21250 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024712 B = 0.008201 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.770859 B = 3413.357639 C = 4457.980956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.103 4.103 3 C -0.194 4.194 4 S 0.055 5.945 5 C -0.209 4.209 6 C -0.060 4.060 7 C -0.191 4.191 8 C 0.066 3.934 9 C -0.487 4.487 10 H 0.089 0.911 11 C 0.033 3.967 12 N -0.825 5.825 13 Si 0.986 3.014 14 H -0.259 1.259 15 H -0.271 1.271 16 H -0.252 1.252 17 C -0.076 4.076 18 C -0.170 4.170 19 C 0.391 3.609 20 O -0.503 6.503 21 H 0.075 0.925 22 H 0.091 0.909 23 H 0.060 0.940 24 H 0.196 0.804 25 H 0.112 0.888 26 H 0.291 0.709 27 H 0.116 0.884 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.349 8.939 -1.864 10.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.327 4.327 4 S 0.316 5.684 5 C -0.324 4.324 6 C -0.067 4.067 7 C -0.213 4.213 8 C 0.063 3.937 9 C -0.516 4.516 10 H 0.107 0.893 11 C -0.183 4.183 12 N -0.451 5.451 13 Si 0.806 3.194 14 H -0.184 1.184 15 H -0.195 1.195 16 H -0.176 1.176 17 C -0.097 4.097 18 C -0.176 4.176 19 C 0.253 3.747 20 O -0.380 6.380 21 H 0.094 0.906 22 H 0.110 0.890 23 H 0.079 0.921 24 H 0.213 0.787 25 H 0.130 0.870 26 H 0.102 0.898 27 H 0.133 0.867 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.470 9.333 -1.714 9.805 hybrid contribution -1.148 -1.892 0.073 2.214 sum -3.618 7.441 -1.641 8.435 Atomic orbital electron populations 1.20530 0.87954 1.03403 1.02864 1.20004 0.98159 0.90285 1.03116 1.24972 0.95449 1.02630 1.09609 1.83133 1.06669 0.96617 1.81946 1.22445 0.96056 0.96704 1.17145 1.19275 0.91610 0.94043 1.01779 1.21048 0.98371 0.90081 1.11796 1.17741 0.91354 0.94187 0.90456 1.19827 1.03408 0.91496 1.36883 0.89318 1.26864 0.93265 1.06507 0.91671 1.69860 1.14911 1.37837 1.22453 0.85175 0.79547 0.74935 0.79710 1.18367 1.19548 1.17626 1.21790 0.96755 0.94440 0.96713 1.20160 0.95070 0.92863 1.09490 1.24300 0.87166 0.94605 0.68640 1.90457 1.58302 1.51670 1.37569 0.90608 0.89011 0.92146 0.78745 0.86980 0.89814 0.86656 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.24 10.02 71.24 0.71 -1.53 15 2 C -0.10 -3.41 5.97 -18.56 -0.11 -3.53 15 3 C -0.19 -5.53 10.73 67.20 0.72 -4.81 15 4 S 0.06 1.75 22.65 -56.49 -1.28 0.48 15 5 C -0.21 -8.91 6.39 23.63 0.15 -8.76 15 6 C -0.06 -2.59 6.00 -20.38 -0.12 -2.72 15 7 C -0.19 -9.06 9.48 23.24 0.22 -8.84 15 8 C 0.07 3.52 5.55 -21.47 -0.12 3.40 15 9 C -0.49 -25.46 9.02 23.43 0.21 -25.25 15 10 H 0.09 4.35 7.91 -2.91 -0.02 4.33 15 11 C 0.03 1.62 5.12 85.22 0.44 2.06 15 12 N -0.83 -43.84 10.97 21.81 0.24 -43.60 15 13 Si 0.99 37.72 29.60 68.60 2.03 39.75 15 14 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 15 H -0.27 -10.00 7.11 99.48 0.71 -9.29 15 16 H -0.25 -9.12 7.11 99.48 0.71 -8.41 15 17 C -0.08 -4.09 8.19 22.97 0.19 -3.90 15 18 C -0.17 -8.05 5.88 -20.01 -0.12 -8.17 15 19 C 0.39 16.33 11.29 70.07 0.79 17.12 15 20 O -0.50 -24.27 17.11 -3.09 -0.05 -24.32 15 21 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 22 H 0.09 1.73 8.11 -2.39 -0.02 1.71 15 23 H 0.06 1.62 7.56 -2.39 -0.02 1.60 15 24 H 0.20 3.86 8.06 -2.91 -0.02 3.84 15 25 H 0.11 4.92 7.60 -2.91 -0.02 4.90 15 26 H 0.29 14.20 8.30 -92.71 -0.77 13.43 15 27 H 0.12 6.70 5.70 -2.91 -0.02 6.68 15 28 H 0.13 4.13 7.68 -2.91 -0.02 4.11 15 Total: -1.00 -62.08 264.38 5.09 -56.99 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 1.19 Total: 15.63 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 2.96 Total: -44.92 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.24 Total: -43.60 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.05 Total: -24.32 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.28 Total: 0.48 kcal Total: -62.08 5.09 -56.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396336673.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.686 kcal (2) G-P(sol) polarization free energy of solvation -62.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds