Wall clock time and date at job start Mon Mar 30 2020 05:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32804 * 124.64695 * 2 1 4 4 C 1.39881 * 115.80743 * 179.97438 * 3 2 1 5 5 C 1.39971 * 112.76045 * 0.02562 * 4 3 2 6 6 C 1.39871 * 120.69813 * 179.97438 * 5 4 3 7 7 C 1.37335 * 122.49072 * 0.02562 * 6 5 4 8 8 C 1.39766 * 120.90310 * 359.76988 * 7 6 5 9 9 C 1.46272 * 120.46819 * 180.24347 * 8 7 6 10 10 O 1.21387 * 120.00086 * 5.16985 * 9 8 7 11 11 C 1.46465 * 119.06480 * 0.46348 * 8 7 6 12 12 C 1.39758 * 120.72265 * 179.81021 * 11 8 7 13 13 H 1.07997 * 120.00710 * 42.27465 * 12 11 8 14 14 C 1.40519 * 119.99705 * 222.27616 * 12 11 8 15 15 N 1.30525 * 120.00061 * 204.22054 * 14 12 11 16 16 Si 1.86798 * 120.00046 * 24.21252 * 14 12 11 17 17 H 1.48503 * 109.47517 * 265.17212 * 16 14 12 18 18 H 1.48502 * 109.47115 * 25.17284 * 16 14 12 19 19 H 1.48500 * 109.47055 * 145.16749 * 16 14 12 20 20 S 1.75472 * 124.65105 * 179.97438 * 2 1 3 21 21 H 1.09005 * 109.46991 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47018 * 299.99577 * 1 2 3 23 23 H 1.08997 * 109.47420 * 59.99769 * 1 2 3 24 24 H 1.07998 * 122.10109 * 359.96423 * 3 2 1 25 25 H 1.07998 * 118.75172 * 179.97438 * 6 5 4 26 26 H 1.08005 * 119.54670 * 180.02562 * 7 6 5 27 27 H 1.08004 * 119.99580 * 185.17015 * 9 8 7 28 28 H 0.97001 * 119.99979 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2620 1.0925 0.0000 4 6 3.6442 0.8776 0.0006 5 6 3.9810 -0.4810 0.0005 6 6 5.3202 -0.8848 0.0004 7 6 6.3608 0.0114 0.0010 8 6 6.1223 1.3885 -0.0031 9 6 7.2379 2.3345 -0.0078 10 8 8.3778 1.9282 -0.1029 11 6 4.7394 1.8711 0.0022 12 6 4.4611 3.2407 0.0023 13 1 5.0291 3.9073 -0.6297 14 6 3.4422 3.7505 0.8247 15 7 2.8563 4.8755 0.5167 16 14 2.9260 2.8182 2.3589 17 1 1.7587 1.9556 2.0447 18 1 4.0537 1.9734 2.8277 19 1 2.5552 3.7843 3.4240 20 16 2.5047 -1.4435 0.0006 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8357 2.0848 -0.0006 25 1 5.5442 -1.9412 0.0008 26 1 7.3775 -0.3531 0.0005 27 1 7.0473 3.3945 0.0733 28 1 2.1532 5.2276 1.0846 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396337146.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:59 Heat of formation + Delta-G solvation = -6.635488 kcal Electronic energy + Delta-G solvation = -15106.234433 eV Core-core repulsion = 12599.060759 eV Total energy + Delta-G solvation = -2507.173674 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.61227 -37.39610 -34.62343 -34.21846 -30.90173 -30.49606 -26.94915 -25.13423 -23.65964 -21.07995 -20.89149 -18.77316 -17.97176 -16.43728 -15.52057 -15.38802 -14.85317 -14.25469 -13.69431 -13.59254 -13.43098 -12.96896 -12.62938 -12.52670 -12.17779 -12.09824 -11.73724 -11.41239 -11.37676 -10.79561 -10.45486 -10.15311 -10.01766 -9.77090 -9.62438 -8.66176 -8.35144 -7.56730 -7.51496 -7.00564 -4.95850 1.43303 1.90264 2.29409 2.69304 2.83320 2.90945 3.03940 3.08555 3.60004 3.69671 4.09548 4.96027 5.34242 5.55440 5.64521 5.82045 5.86871 5.94061 6.08337 6.22894 6.28384 6.48519 6.68074 6.77919 6.80187 6.90581 7.27452 7.31671 7.48184 7.63337 7.74726 8.04941 8.24193 8.63302 9.42294 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.013141 C = 0.008422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.002941 B = 2130.185497 C = 3323.918720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.235 4.235 3 C -0.070 4.070 4 C -0.177 4.177 5 C -0.048 4.048 6 C -0.237 4.237 7 C 0.019 3.981 8 C -0.324 4.324 9 C 0.393 3.607 10 O -0.525 6.525 11 C 0.163 3.837 12 C -0.412 4.412 13 H 0.112 0.888 14 C 0.091 3.909 15 N -0.756 5.756 16 Si 0.886 3.114 17 H -0.237 1.237 18 H -0.242 1.242 19 H -0.277 1.277 20 S 0.029 5.971 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.132 0.868 25 H 0.100 0.900 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.327 -4.123 1.588 6.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.350 4.350 3 C -0.099 4.099 4 C -0.184 4.184 5 C -0.164 4.164 6 C -0.262 4.262 7 C -0.003 4.003 8 C -0.329 4.329 9 C 0.261 3.739 10 O -0.407 6.407 11 C 0.157 3.843 12 C -0.437 4.437 13 H 0.130 0.870 14 C -0.136 4.136 15 N -0.375 5.375 16 Si 0.708 3.292 17 H -0.161 1.161 18 H -0.165 1.165 19 H -0.203 1.203 20 S 0.292 5.708 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.150 0.850 25 H 0.118 0.882 26 H 0.131 0.869 27 H 0.103 0.897 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.362 -5.586 1.545 7.896 hybrid contribution -0.215 1.288 0.587 1.431 sum -5.577 -4.298 2.132 7.357 Atomic orbital electron populations 1.20128 0.88873 1.01611 1.01928 1.23486 0.98796 0.94870 1.17860 1.19680 0.92344 0.98712 0.99208 1.19173 0.92680 0.91996 1.14538 1.22569 0.96424 0.95367 1.02023 1.19430 0.89390 0.98073 1.19258 1.20677 0.97203 0.92324 0.90086 1.21140 0.93434 0.93839 1.24480 1.23312 0.86599 0.94245 0.69747 1.90401 1.25461 1.83529 1.41351 1.19527 0.88524 0.91272 0.85003 1.19562 1.12413 0.92570 1.19144 0.87030 1.26442 0.92423 0.94719 1.00018 1.69598 1.15339 1.17549 1.35041 0.86699 0.82758 0.80467 0.79277 1.16096 1.16499 1.20298 1.83555 0.97026 1.10176 1.80064 0.92294 0.91791 0.91522 0.85026 0.88200 0.86926 0.89748 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.34 36.01 0.37 -0.61 15 2 C -0.24 -4.47 6.44 -36.17 -0.23 -4.70 15 3 C -0.07 -1.50 6.22 -40.83 -0.25 -1.75 15 4 C -0.18 -4.05 4.74 -104.69 -0.50 -4.54 15 5 C -0.05 -1.04 6.48 -38.32 -0.25 -1.29 15 6 C -0.24 -5.01 9.94 -39.30 -0.39 -5.40 15 7 C 0.02 0.40 9.53 -39.34 -0.37 0.03 15 8 C -0.32 -7.41 6.05 -102.79 -0.62 -8.03 15 9 C 0.39 8.54 11.02 33.96 0.37 8.92 15 10 O -0.53 -12.33 17.17 5.46 0.09 -12.24 15 11 C 0.16 3.81 4.96 -102.08 -0.51 3.31 15 12 C -0.41 -9.60 8.42 -38.15 -0.32 -9.92 15 13 H 0.11 2.63 7.61 -52.49 -0.40 2.23 15 14 C 0.09 2.04 4.32 -17.25 -0.07 1.96 15 15 N -0.76 -16.86 13.91 55.58 0.77 -16.09 15 16 Si 0.89 18.20 24.49 -169.99 -4.16 14.04 15 17 H -0.24 -4.73 5.61 56.52 0.32 -4.41 15 18 H -0.24 -5.37 7.11 56.52 0.40 -4.97 15 19 H -0.28 -5.41 7.11 56.52 0.40 -5.00 15 20 S 0.03 0.54 23.27 -107.50 -2.50 -1.96 15 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.07 0.91 8.14 -51.93 -0.42 0.48 15 24 H 0.13 2.79 5.80 -52.49 -0.30 2.49 15 25 H 0.10 1.87 8.06 -52.49 -0.42 1.45 15 26 H 0.11 2.29 7.63 -52.48 -0.40 1.89 15 27 H 0.09 1.68 7.09 -52.48 -0.37 1.31 15 28 H 0.30 5.93 8.29 -40.82 -0.34 5.59 15 LS Contribution 256.03 15.07 3.86 3.86 Total: -1.00 -25.45 256.03 -7.10 -32.55 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -2.39 Total: 1.87 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -2.77 Total: -22.03 kcal Atomic # 7 Polarization: -16.86 SS G_CDS: 0.77 Total: -16.09 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -4.16 Total: 14.04 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -2.50 Total: -1.96 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -25.45 -7.10 -32.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396337146.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.914 kcal (2) G-P(sol) polarization free energy of solvation -25.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds