Wall clock time and date at job start Mon Mar 30 2020 05:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32804 * 124.64695 * 2 1 4 4 C 1.39881 * 115.80743 * 179.97438 * 3 2 1 5 5 C 1.39971 * 112.76045 * 0.02562 * 4 3 2 6 6 C 1.39871 * 120.69813 * 179.97438 * 5 4 3 7 7 C 1.37335 * 122.49072 * 0.02562 * 6 5 4 8 8 C 1.39766 * 120.90310 * 359.76988 * 7 6 5 9 9 C 1.46272 * 120.46819 * 180.24347 * 8 7 6 10 10 O 1.21387 * 120.00086 * 5.16985 * 9 8 7 11 11 C 1.46465 * 119.06480 * 0.46348 * 8 7 6 12 12 C 1.39758 * 120.72265 * 179.81021 * 11 8 7 13 13 H 1.07997 * 120.00710 * 42.27465 * 12 11 8 14 14 C 1.40519 * 119.99705 * 222.27616 * 12 11 8 15 15 N 1.30525 * 120.00061 * 204.22054 * 14 12 11 16 16 Si 1.86798 * 120.00046 * 24.21252 * 14 12 11 17 17 H 1.48503 * 109.47517 * 265.17212 * 16 14 12 18 18 H 1.48502 * 109.47115 * 25.17284 * 16 14 12 19 19 H 1.48500 * 109.47055 * 145.16749 * 16 14 12 20 20 S 1.75472 * 124.65105 * 179.97438 * 2 1 3 21 21 H 1.09005 * 109.46991 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47018 * 299.99577 * 1 2 3 23 23 H 1.08997 * 109.47420 * 59.99769 * 1 2 3 24 24 H 1.07998 * 122.10109 * 359.96423 * 3 2 1 25 25 H 1.07998 * 118.75172 * 179.97438 * 6 5 4 26 26 H 1.08005 * 119.54670 * 180.02562 * 7 6 5 27 27 H 1.08004 * 119.99580 * 185.17015 * 9 8 7 28 28 H 0.97001 * 119.99979 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2620 1.0925 0.0000 4 6 3.6442 0.8776 0.0006 5 6 3.9810 -0.4810 0.0005 6 6 5.3202 -0.8848 0.0004 7 6 6.3608 0.0114 0.0010 8 6 6.1223 1.3885 -0.0031 9 6 7.2379 2.3345 -0.0078 10 8 8.3778 1.9282 -0.1029 11 6 4.7394 1.8711 0.0022 12 6 4.4611 3.2407 0.0023 13 1 5.0291 3.9073 -0.6297 14 6 3.4422 3.7505 0.8247 15 7 2.8563 4.8755 0.5167 16 14 2.9260 2.8182 2.3589 17 1 1.7587 1.9556 2.0447 18 1 4.0537 1.9734 2.8277 19 1 2.5552 3.7843 3.4240 20 16 2.5047 -1.4435 0.0006 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8357 2.0848 -0.0006 25 1 5.5442 -1.9412 0.0008 26 1 7.3775 -0.3531 0.0005 27 1 7.0473 3.3945 0.0733 28 1 2.1532 5.2276 1.0846 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396337146.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:59 Heat of formation + Delta-G solvation = -19.556169 kcal Electronic energy + Delta-G solvation = -15106.794716 eV Core-core repulsion = 12599.060759 eV Total energy + Delta-G solvation = -2507.733957 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.29509 -39.11906 -36.21852 -35.91283 -32.60879 -31.97083 -28.52592 -26.75280 -25.33659 -22.66250 -22.56288 -20.44553 -19.64496 -18.07122 -17.17985 -17.06605 -16.51476 -15.83984 -15.31446 -15.12753 -15.07776 -14.65241 -14.29225 -14.04402 -13.67669 -13.60685 -13.20476 -13.06365 -12.97149 -12.34008 -12.07633 -11.79788 -11.59253 -11.38997 -11.28953 -10.40566 -10.01009 -9.24608 -9.15643 -8.60820 -6.69529 -0.23239 0.20568 0.73588 1.11115 1.19660 1.26156 1.38972 1.43204 1.91107 2.04836 2.38120 3.23467 3.80548 3.93794 4.25429 4.32193 4.39892 4.56827 4.67510 4.76499 4.83919 4.98408 5.05553 5.18959 5.21594 5.25593 5.61440 5.65683 5.79513 5.91475 6.02579 6.31315 6.52527 6.89832 7.78296 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.013141 C = 0.008422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.002941 B = 2130.185497 C = 3323.918720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.219 4.219 3 C -0.104 4.104 4 C -0.188 4.188 5 C -0.083 4.083 6 C -0.233 4.233 7 C 0.004 3.996 8 C -0.348 4.348 9 C 0.397 3.603 10 O -0.546 6.546 11 C 0.150 3.850 12 C -0.433 4.433 13 H 0.097 0.903 14 C 0.078 3.922 15 N -0.775 5.775 16 Si 0.921 3.079 17 H -0.225 1.225 18 H -0.271 1.271 19 H -0.260 1.260 20 S 0.085 5.915 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.128 0.872 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.103 0.897 28 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.364 -5.520 2.014 9.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.334 4.334 3 C -0.133 4.133 4 C -0.196 4.196 5 C -0.199 4.199 6 C -0.257 4.257 7 C -0.017 4.017 8 C -0.352 4.352 9 C 0.267 3.733 10 O -0.430 6.430 11 C 0.144 3.856 12 C -0.458 4.458 13 H 0.115 0.885 14 C -0.148 4.148 15 N -0.396 5.396 16 Si 0.742 3.258 17 H -0.148 1.148 18 H -0.196 1.196 19 H -0.185 1.185 20 S 0.349 5.651 21 H 0.100 0.900 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.146 0.854 25 H 0.141 0.859 26 H 0.139 0.861 27 H 0.119 0.881 28 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.417 -6.975 1.967 10.370 hybrid contribution 0.316 1.600 0.405 1.681 sum -7.101 -5.375 2.372 9.216 Atomic orbital electron populations 1.20334 0.85650 1.03635 1.03315 1.24192 1.01050 0.94480 1.13727 1.19694 0.91920 0.99410 1.02263 1.19436 0.93412 0.92466 1.14281 1.22947 0.98127 0.96040 1.02770 1.19722 0.89185 0.99145 1.17670 1.20852 0.98029 0.92158 0.90665 1.21363 0.93631 0.94704 1.25534 1.23481 0.86064 0.94892 0.68900 1.90380 1.26055 1.83915 1.42665 1.19709 0.89134 0.91604 0.85170 1.19539 1.13449 0.92615 1.20222 0.88503 1.26733 0.92145 0.95046 1.00854 1.69566 1.15980 1.18025 1.36044 0.86213 0.81830 0.79899 0.77868 1.14782 1.19554 1.18457 1.83326 0.94478 1.08626 1.78691 0.89972 0.90471 0.89976 0.85447 0.85864 0.86067 0.88109 0.87870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.78 10.34 71.24 0.74 -1.05 15 2 C -0.22 -7.62 6.44 24.51 0.16 -7.46 15 3 C -0.10 -4.26 6.22 21.49 0.13 -4.12 15 4 C -0.19 -8.51 4.74 -19.91 -0.09 -8.61 15 5 C -0.08 -3.49 6.48 23.09 0.15 -3.34 15 6 C -0.23 -9.59 9.94 22.45 0.22 -9.37 15 7 C 0.00 0.19 9.53 22.43 0.21 0.40 15 8 C -0.35 -16.16 6.05 -18.68 -0.11 -16.28 15 9 C 0.40 17.66 11.02 69.91 0.77 18.43 15 10 O -0.55 -26.03 17.17 -3.36 -0.06 -26.09 15 11 C 0.15 7.11 4.96 -18.22 -0.09 7.02 15 12 C -0.43 -20.66 8.42 23.19 0.20 -20.46 15 13 H 0.10 4.76 7.61 -2.91 -0.02 4.73 15 14 C 0.08 3.49 4.32 85.44 0.37 3.86 15 15 N -0.78 -34.43 13.91 21.93 0.31 -34.13 15 16 Si 0.92 36.75 24.49 68.60 1.68 38.43 15 17 H -0.22 -8.42 5.61 99.48 0.56 -7.87 15 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 19 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 20 S 0.08 2.90 23.27 -56.49 -1.31 1.59 15 21 H 0.08 1.71 8.14 -2.38 -0.02 1.69 15 22 H 0.08 1.81 8.14 -2.38 -0.02 1.79 15 23 H 0.08 1.88 8.14 -2.39 -0.02 1.86 15 24 H 0.13 5.27 5.80 -2.91 -0.02 5.25 15 25 H 0.12 4.36 8.06 -2.91 -0.02 4.34 15 26 H 0.12 4.93 7.63 -2.91 -0.02 4.90 15 27 H 0.10 4.13 7.09 -2.91 -0.02 4.11 15 28 H 0.31 12.08 8.29 -92.71 -0.77 11.31 15 Total: -1.00 -53.46 256.03 4.30 -49.16 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.04 Total: 12.00 kcal Atomic # 6 Polarization: -43.62 SS G_CDS: 2.65 Total: -40.97 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.31 Total: -34.13 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.06 Total: -26.09 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 1.68 Total: 38.43 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.31 Total: 1.59 kcal Total: -53.46 4.30 -49.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396337146.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.602 kcal (2) G-P(sol) polarization free energy of solvation -53.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds