Wall clock time and date at job start Mon Mar 30 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.31943 * 124.24635 * 2 1 4 4 C 1.45455 * 114.95632 * 179.97438 * 3 2 1 5 5 C 1.40682 * 128.36153 * 179.97438 * 4 3 2 6 6 C 1.39777 * 120.48656 * 180.02562 * 5 4 3 7 7 C 1.40610 * 120.46326 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99901 * 205.56441 * 7 6 5 9 9 C 1.40231 * 119.99778 * 25.56746 * 7 6 5 10 10 N 1.30669 * 120.00652 * 15.43456 * 9 7 6 11 11 Si 1.86805 * 119.99600 * 195.43727 * 9 7 6 12 12 H 1.48490 * 109.47273 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47216 * 120.00285 * 11 9 7 14 14 H 1.48503 * 109.46870 * 239.99669 * 11 9 7 15 15 C 1.47017 * 119.07227 * 359.97438 * 6 5 4 16 16 C 1.46203 * 120.51155 * 180.02562 * 15 6 5 17 17 O 1.21393 * 119.99764 * 180.02562 * 16 15 6 18 18 C 1.38938 * 118.97448 * 359.97438 * 15 6 5 19 19 C 1.39759 * 120.70452 * 0.03357 * 18 15 6 20 20 S 1.75214 * 124.24304 * 180.28528 * 2 1 3 21 21 H 1.09003 * 109.47166 * 90.00006 * 1 2 3 22 22 H 1.08995 * 109.47353 * 209.99808 * 1 2 3 23 23 H 1.09004 * 109.46769 * 330.00236 * 1 2 3 24 24 H 1.07997 * 122.52430 * 0.02562 * 3 2 1 25 25 H 1.07998 * 119.75264 * 0.04784 * 5 4 3 26 26 H 0.97005 * 120.00811 * 179.97438 * 10 9 7 27 27 H 1.07998 * 120.00019 * 0.02562 * 16 15 6 28 28 H 1.07996 * 119.64758 * 179.97438 * 18 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2495 1.0907 0.0000 4 6 3.6850 0.8559 0.0006 5 6 4.7247 1.8036 0.0002 6 6 6.0602 1.3910 0.0004 7 6 7.0991 2.3387 -0.0005 8 1 8.0666 2.0789 -0.4040 9 6 6.8788 3.6210 0.5226 10 7 5.8344 3.8497 1.2739 11 14 8.0785 5.0023 0.1455 12 1 9.1697 4.4876 -0.7202 13 1 7.3652 6.0997 -0.5561 14 1 8.6545 5.5176 1.4136 15 6 6.3636 -0.0475 0.0015 16 6 7.7492 -0.5139 0.0022 17 8 7.9890 -1.7039 0.0027 18 6 5.3131 -0.9568 0.0029 19 6 3.9871 -0.5154 0.0026 20 16 2.4930 -1.4484 -0.0072 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8901 0.5138 24 1 1.8236 2.0831 0.0004 25 1 4.4892 2.8575 0.0002 26 1 5.6822 4.7366 1.6361 27 1 8.5594 0.2002 0.0024 28 1 5.5235 -2.0161 0.0033 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396337542.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:12 Heat of formation + Delta-G solvation = -28.016973 kcal Electronic energy + Delta-G solvation = -14648.443305 eV Core-core repulsion = 12140.342461 eV Total energy + Delta-G solvation = -2508.100845 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.23404 -38.99922 -36.82779 -35.25474 -32.21602 -31.45949 -28.33814 -27.59408 -24.41719 -23.63838 -21.50536 -21.02942 -19.03948 -18.36291 -17.13689 -16.77387 -16.38313 -15.59150 -15.41037 -15.06931 -14.69731 -14.58713 -14.14769 -14.00680 -13.61851 -13.43631 -13.10874 -12.99852 -12.78072 -12.36086 -11.91435 -11.82014 -11.49645 -11.34158 -10.99317 -10.45505 -10.19647 -9.16253 -8.81257 -8.56981 -6.47618 -0.31206 0.76703 0.88345 1.03064 1.30661 1.43727 1.53789 1.59857 2.05782 2.16460 2.58648 3.50831 3.79388 3.88630 4.09739 4.44998 4.56197 4.61964 4.75873 4.76576 4.87430 5.04708 5.06805 5.16516 5.27746 5.48187 5.49246 5.74238 5.86897 5.98501 6.42177 6.58135 6.72266 6.84475 8.10691 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.008085 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.652130 B = 3462.405197 C = 4635.729811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.140 4.140 3 C -0.152 4.152 4 C -0.036 4.036 5 C -0.175 4.175 6 C 0.123 3.877 7 C -0.451 4.451 8 H 0.105 0.895 9 C 0.038 3.962 10 N -0.793 5.793 11 Si 0.990 3.010 12 H -0.249 1.249 13 H -0.264 1.264 14 H -0.265 1.265 15 C -0.309 4.309 16 C 0.399 3.601 17 O -0.542 6.542 18 C 0.004 3.996 19 C -0.276 4.276 20 S 0.018 5.982 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.149 0.851 25 H 0.121 0.879 26 H 0.299 0.701 27 H 0.120 0.880 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.651 2.163 -1.606 6.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.255 4.255 3 C -0.182 4.182 4 C -0.042 4.042 5 C -0.197 4.197 6 C 0.118 3.882 7 C -0.478 4.478 8 H 0.123 0.877 9 C -0.182 4.182 10 N -0.416 5.416 11 Si 0.810 3.190 12 H -0.172 1.172 13 H -0.188 1.188 14 H -0.190 1.190 15 C -0.313 4.313 16 C 0.267 3.733 17 O -0.424 6.424 18 C -0.019 4.019 19 C -0.390 4.390 20 S 0.276 5.724 21 H 0.109 0.891 22 H 0.099 0.901 23 H 0.110 0.890 24 H 0.167 0.833 25 H 0.138 0.862 26 H 0.111 0.889 27 H 0.136 0.864 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.030 0.222 -1.461 6.208 hybrid contribution 0.758 2.019 0.105 2.159 sum -5.272 2.241 -1.356 5.887 Atomic orbital electron populations 1.20526 0.84903 1.04332 1.04053 1.24279 1.01283 0.94844 1.05142 1.21117 0.90956 0.99915 1.06262 1.19644 0.93904 0.92320 0.98328 1.21236 0.91108 0.97864 1.09482 1.18663 0.93221 0.89997 0.86285 1.20097 0.99230 0.95869 1.32630 0.87702 1.27011 0.97745 1.01998 0.91475 1.69774 1.26400 1.25251 1.20220 0.85005 0.78256 0.76284 0.79485 1.17154 1.18826 1.18957 1.21567 0.95033 0.93943 1.20767 1.23697 0.91713 0.89563 0.68308 1.90396 1.88059 1.22164 1.41828 1.20403 0.90143 0.97970 0.93336 1.22045 0.96635 0.96267 1.24028 1.83276 0.95583 1.09369 1.84140 0.89118 0.90134 0.89041 0.83297 0.86177 0.88924 0.86431 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 10.31 71.24 0.73 -1.04 15 2 C -0.14 -4.72 6.38 24.82 0.16 -4.56 15 3 C -0.15 -5.88 10.19 23.26 0.24 -5.64 15 4 C -0.04 -1.69 6.01 -20.29 -0.12 -1.82 15 5 C -0.17 -8.75 8.73 23.24 0.20 -8.55 15 6 C 0.12 6.15 5.72 -20.02 -0.11 6.03 15 7 C -0.45 -20.85 8.50 23.33 0.20 -20.65 15 8 H 0.11 4.40 6.66 -2.91 -0.02 4.38 15 9 C 0.04 1.64 5.18 85.35 0.44 2.08 15 10 N -0.79 -36.24 10.88 21.87 0.24 -36.00 15 11 Si 0.99 32.17 29.59 68.60 2.03 34.20 15 12 H -0.25 -7.77 7.11 99.48 0.71 -7.07 15 13 H -0.26 -8.35 7.11 99.48 0.71 -7.64 15 14 H -0.26 -8.37 7.11 99.48 0.71 -7.66 15 15 C -0.31 -15.08 6.04 -18.74 -0.11 -15.19 15 16 C 0.40 17.70 11.02 69.89 0.77 18.47 15 17 O -0.54 -26.10 17.15 -3.38 -0.06 -26.15 15 18 C 0.00 0.20 9.61 22.81 0.22 0.41 15 19 C -0.28 -12.91 6.46 23.17 0.15 -12.76 15 20 S 0.02 0.67 23.20 -56.49 -1.31 -0.64 15 21 H 0.09 1.73 8.14 -2.39 -0.02 1.71 15 22 H 0.08 1.59 8.14 -2.39 -0.02 1.57 15 23 H 0.09 1.74 8.14 -2.39 -0.02 1.72 15 24 H 0.15 5.04 8.06 -2.91 -0.02 5.02 15 25 H 0.12 6.06 6.11 -2.91 -0.02 6.05 15 26 H 0.30 12.11 8.29 -92.70 -0.77 11.34 15 27 H 0.12 4.49 6.67 -2.91 -0.02 4.47 15 28 H 0.11 4.99 7.62 -2.91 -0.02 4.97 15 Total: -1.00 -57.84 264.10 4.85 -52.98 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 1.19 Total: 18.84 kcal Atomic # 6 Polarization: -45.98 SS G_CDS: 2.76 Total: -43.22 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.24 Total: -36.00 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.06 Total: -26.15 kcal Atomic # 14 Polarization: 32.17 SS G_CDS: 2.03 Total: 34.20 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -1.31 Total: -0.64 kcal Total: -57.84 4.85 -52.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396337542.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.967 kcal (2) G-P(sol) polarization free energy of solvation -57.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds