Wall clock time and date at job start Mon Mar 30 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41327 * 119.64056 * 2 1 4 4 C 1.40740 * 127.95349 * 359.97438 * 3 2 1 5 5 C 1.32428 * 115.89711 * 179.97438 * 4 3 2 6 6 S 1.75418 * 110.92084 * 0.02562 * 5 4 3 7 7 C 1.40593 * 119.76165 * 179.97438 * 3 2 1 8 8 C 1.39008 * 120.97326 * 0.02562 * 7 3 2 9 9 C 1.40235 * 120.48424 * 0.02562 * 8 7 3 10 10 C 1.40336 * 120.58072 * 180.25757 * 9 8 7 11 11 H 1.07999 * 120.00538 * 143.31982 * 10 9 8 12 12 C 1.40241 * 119.99665 * 323.32054 * 10 9 8 13 13 N 1.30677 * 120.00091 * 349.12262 * 12 10 9 14 14 Si 1.86805 * 119.99964 * 169.12825 * 12 10 9 15 15 H 1.48504 * 109.47071 * 90.00080 * 14 12 10 16 16 H 1.48499 * 109.46809 * 209.99687 * 14 12 10 17 17 H 1.48497 * 109.47031 * 330.00030 * 14 12 10 18 18 C 1.38432 * 119.64238 * 180.02562 * 2 1 3 19 19 C 1.46320 * 120.38919 * 359.97438 * 18 2 1 20 20 O 1.21375 * 120.00015 * 174.34054 * 19 18 2 21 21 H 1.09002 * 109.46952 * 269.97640 * 1 2 3 22 22 H 1.09002 * 109.47368 * 29.97852 * 1 2 3 23 23 H 1.08996 * 109.47186 * 149.97701 * 1 2 3 24 24 H 1.08000 * 122.05415 * 359.97438 * 4 3 2 25 25 H 1.07994 * 124.54097 * 180.02562 * 5 4 3 26 26 H 1.08005 * 119.75725 * 180.02562 * 8 7 3 27 27 H 0.97005 * 120.00381 * 179.97438 * 13 12 10 28 28 H 1.08001 * 120.00105 * 354.33569 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.2283 0.0000 4 6 1.6695 2.5295 -0.0005 5 6 2.5504 3.5183 0.0002 6 16 4.1905 2.8961 0.0008 7 6 3.6118 1.2313 0.0005 8 6 4.3297 0.0410 0.0006 9 6 3.6623 -1.1924 -0.0005 10 6 4.3850 -2.3953 0.0049 11 1 4.0176 -3.2436 0.5633 12 6 5.5845 -2.4959 -0.7148 13 7 5.9226 -1.5548 -1.5559 14 14 6.6987 -3.9753 -0.4710 15 1 6.3218 -5.0426 -1.4324 16 1 8.1099 -3.5756 -0.7034 17 1 6.5501 -4.4836 0.9163 18 6 2.1916 -1.2032 -0.0005 19 6 1.4607 -2.4707 -0.0005 20 8 2.0637 -3.5190 -0.1047 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8902 -0.5135 23 1 -0.3633 -0.8897 -0.5142 24 1 0.6047 2.7105 -0.0014 25 1 2.2934 4.5672 0.0003 26 1 5.4095 0.0662 0.0014 27 1 6.7525 -1.6241 -2.0535 28 1 0.3847 -2.4736 0.0922 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396337651.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:38 Heat of formation + Delta-G solvation = -6.595053 kcal Electronic energy + Delta-G solvation = -15035.373972 eV Core-core repulsion = 12528.202051 eV Total energy + Delta-G solvation = -2507.171921 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.75408 -37.24066 -34.85166 -33.32094 -31.66619 -28.98977 -26.61198 -25.36961 -23.38772 -21.66062 -20.42335 -18.73561 -17.23464 -16.40391 -15.71153 -15.16474 -14.95295 -13.90924 -13.57798 -13.55804 -12.71383 -12.54386 -12.42601 -12.11415 -12.06964 -12.02180 -11.71010 -11.38022 -11.18066 -10.85910 -10.35758 -9.98171 -9.81322 -9.76176 -9.28443 -8.49731 -8.37171 -7.32645 -7.05795 -6.74432 -4.57427 1.78693 1.89303 2.60311 2.91065 2.98086 3.00169 3.04230 3.43220 3.65216 3.78427 4.41429 5.22635 5.29875 5.55017 5.69394 5.74486 5.98117 6.05288 6.20522 6.34215 6.69133 6.71875 6.79762 6.87149 6.96888 7.11792 7.41091 7.63486 7.69007 7.76919 8.30638 8.48140 8.57170 8.70307 9.86824 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022902 B = 0.009461 C = 0.006859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.291859 B = 2958.718789 C = 4081.430807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.039 3.961 3 C -0.220 4.220 4 C -0.070 4.070 5 C -0.261 4.261 6 S -0.008 6.008 7 C -0.055 4.055 8 C -0.150 4.150 9 C 0.158 3.842 10 C -0.393 4.393 11 H 0.106 0.894 12 C 0.067 3.933 13 N -0.769 5.769 14 Si 0.922 3.078 15 H -0.264 1.264 16 H -0.274 1.274 17 H -0.256 1.256 18 C -0.285 4.285 19 C 0.372 3.628 20 O -0.474 6.474 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.120 0.880 25 H 0.145 0.855 26 H 0.117 0.883 27 H 0.289 0.711 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 3.408 1.831 5.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.036 3.964 3 C -0.224 4.224 4 C -0.099 4.099 5 C -0.393 4.393 6 S 0.251 5.749 7 C -0.170 4.170 8 C -0.176 4.176 9 C 0.151 3.849 10 C -0.421 4.421 11 H 0.124 0.876 12 C -0.155 4.155 13 N -0.392 5.392 14 Si 0.745 3.255 15 H -0.189 1.189 16 H -0.199 1.199 17 H -0.180 1.180 18 C -0.288 4.288 19 C 0.236 3.764 20 O -0.351 6.351 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.138 0.862 25 H 0.163 0.837 26 H 0.135 0.865 27 H 0.100 0.900 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.713 3.715 1.596 4.869 hybrid contribution -0.855 -0.793 -0.133 1.173 sum -3.568 2.923 1.463 4.838 Atomic orbital electron populations 1.20898 0.92841 1.02206 1.01855 1.19672 0.93503 0.91161 0.92067 1.17487 0.91805 0.92428 1.20711 1.19795 0.99008 0.91526 0.99587 1.24474 0.95460 1.01558 1.17856 1.83781 1.08409 0.99631 1.83056 1.22417 0.95719 0.95492 1.03421 1.20513 0.98673 0.88944 1.09518 1.18312 0.88851 0.92429 0.85323 1.20010 1.01559 0.98727 1.21809 0.87634 1.26238 0.97504 0.98265 0.93524 1.69736 1.21778 1.31809 1.15836 0.86060 0.78157 0.80623 0.80632 1.18924 1.19882 1.17964 1.21245 0.94631 0.93263 1.19617 1.23283 0.92888 0.87685 0.72545 1.90460 1.72795 1.34836 1.37051 0.91307 0.91861 0.91660 0.86179 0.83742 0.86549 0.89965 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 9.23 36.00 0.33 -1.51 15 2 C 0.04 0.79 5.98 -103.38 -0.62 0.18 15 3 C -0.22 -4.78 5.83 -106.89 -0.62 -5.40 15 4 C -0.07 -1.30 9.52 -40.56 -0.39 -1.69 15 5 C -0.26 -4.74 11.08 28.81 0.32 -4.42 15 6 S -0.01 -0.16 23.29 -107.50 -2.50 -2.67 15 7 C -0.06 -1.31 6.44 -38.41 -0.25 -1.55 15 8 C -0.15 -3.81 8.65 -38.55 -0.33 -4.14 15 9 C 0.16 4.08 5.59 -104.78 -0.59 3.49 15 10 C -0.39 -10.16 7.65 -38.04 -0.29 -10.45 15 11 H 0.11 2.75 6.20 -52.49 -0.33 2.43 15 12 C 0.07 1.62 5.21 -17.29 -0.09 1.53 15 13 N -0.77 -19.16 11.42 55.56 0.63 -18.52 15 14 Si 0.92 18.39 29.58 -169.99 -5.03 13.36 15 15 H -0.26 -5.29 7.11 56.52 0.40 -4.89 15 16 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 17 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 18 C -0.28 -6.56 6.03 -103.00 -0.62 -7.18 15 19 C 0.37 7.79 10.75 33.98 0.37 8.16 15 20 O -0.47 -11.43 14.66 5.47 0.08 -11.35 15 21 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 22 H 0.06 0.88 7.04 -51.93 -0.37 0.51 15 23 H 0.06 0.89 6.34 -51.93 -0.33 0.56 15 24 H 0.12 1.87 7.26 -52.49 -0.38 1.49 15 25 H 0.14 2.17 8.06 -52.49 -0.42 1.74 15 26 H 0.12 3.04 6.82 -52.48 -0.36 2.68 15 27 H 0.29 6.50 8.29 -40.82 -0.34 6.16 15 28 H 0.07 1.13 6.40 -52.49 -0.34 0.79 15 LS Contribution 256.77 15.07 3.87 3.87 Total: -1.00 -28.03 256.77 -7.80 -35.83 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -2.07 Total: 2.49 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -2.78 Total: -23.00 kcal Atomic # 7 Polarization: -19.16 SS G_CDS: 0.63 Total: -18.52 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.50 Total: -2.67 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.03 -7.80 -35.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396337651.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.231 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds