Wall clock time and date at job start Mon Mar 30 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41327 * 119.64056 * 2 1 4 4 C 1.40740 * 127.95349 * 359.97438 * 3 2 1 5 5 C 1.32428 * 115.89711 * 179.97438 * 4 3 2 6 6 S 1.75418 * 110.92084 * 0.02562 * 5 4 3 7 7 C 1.40593 * 119.76165 * 179.97438 * 3 2 1 8 8 C 1.39008 * 120.97326 * 0.02562 * 7 3 2 9 9 C 1.40235 * 120.48424 * 0.02562 * 8 7 3 10 10 C 1.40336 * 120.58072 * 180.25757 * 9 8 7 11 11 H 1.07999 * 120.00538 * 143.31982 * 10 9 8 12 12 C 1.40241 * 119.99665 * 323.32054 * 10 9 8 13 13 N 1.30677 * 120.00091 * 349.12262 * 12 10 9 14 14 Si 1.86805 * 119.99964 * 169.12825 * 12 10 9 15 15 H 1.48504 * 109.47071 * 90.00080 * 14 12 10 16 16 H 1.48499 * 109.46809 * 209.99687 * 14 12 10 17 17 H 1.48497 * 109.47031 * 330.00030 * 14 12 10 18 18 C 1.38432 * 119.64238 * 180.02562 * 2 1 3 19 19 C 1.46320 * 120.38919 * 359.97438 * 18 2 1 20 20 O 1.21375 * 120.00015 * 174.34054 * 19 18 2 21 21 H 1.09002 * 109.46952 * 269.97640 * 1 2 3 22 22 H 1.09002 * 109.47368 * 29.97852 * 1 2 3 23 23 H 1.08996 * 109.47186 * 149.97701 * 1 2 3 24 24 H 1.08000 * 122.05415 * 359.97438 * 4 3 2 25 25 H 1.07994 * 124.54097 * 180.02562 * 5 4 3 26 26 H 1.08005 * 119.75725 * 180.02562 * 8 7 3 27 27 H 0.97005 * 120.00381 * 179.97438 * 13 12 10 28 28 H 1.08001 * 120.00105 * 354.33569 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.2283 0.0000 4 6 1.6695 2.5295 -0.0005 5 6 2.5504 3.5183 0.0002 6 16 4.1905 2.8961 0.0008 7 6 3.6118 1.2313 0.0005 8 6 4.3297 0.0410 0.0006 9 6 3.6623 -1.1924 -0.0005 10 6 4.3850 -2.3953 0.0049 11 1 4.0176 -3.2436 0.5633 12 6 5.5845 -2.4959 -0.7148 13 7 5.9226 -1.5548 -1.5559 14 14 6.6987 -3.9753 -0.4710 15 1 6.3218 -5.0426 -1.4324 16 1 8.1099 -3.5756 -0.7034 17 1 6.5501 -4.4836 0.9163 18 6 2.1916 -1.2032 -0.0005 19 6 1.4607 -2.4707 -0.0005 20 8 2.0637 -3.5190 -0.1047 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8902 -0.5135 23 1 -0.3633 -0.8897 -0.5142 24 1 0.6047 2.7105 -0.0014 25 1 2.2934 4.5672 0.0003 26 1 5.4095 0.0662 0.0014 27 1 6.7525 -1.6241 -2.0535 28 1 0.3847 -2.4736 0.0922 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396337651.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:37 Heat of formation + Delta-G solvation = -22.020621 kcal Electronic energy + Delta-G solvation = -15036.042875 eV Core-core repulsion = 12528.202051 eV Total energy + Delta-G solvation = -2507.840823 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.43495 -38.94551 -36.57620 -34.92926 -33.30760 -30.70152 -28.19910 -26.95622 -25.11998 -23.23168 -22.13159 -20.35900 -19.00815 -18.06168 -17.34720 -16.85914 -16.60820 -15.49036 -15.22330 -15.16911 -14.28160 -14.19560 -14.08077 -13.80342 -13.49806 -13.46566 -13.24619 -12.96635 -12.71283 -12.54140 -11.98793 -11.64985 -11.46860 -11.42283 -11.00453 -10.15017 -10.05680 -9.07903 -8.81308 -8.40934 -6.43559 0.11534 0.24050 0.93723 1.29290 1.31916 1.41416 1.46454 1.75959 1.99917 2.13343 2.67087 3.45820 3.75555 4.06230 4.28700 4.48905 4.55148 4.74649 4.91085 4.99233 5.01325 5.13102 5.17451 5.20434 5.36149 5.46186 5.73554 5.87291 5.94320 6.08727 6.47339 6.66704 6.77282 7.05015 8.13861 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022902 B = 0.009461 C = 0.006859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.291859 B = 2958.718789 C = 4081.430807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.043 3.957 3 C -0.227 4.227 4 C -0.078 4.078 5 C -0.241 4.241 6 S -0.010 6.010 7 C -0.081 4.081 8 C -0.185 4.185 9 C 0.130 3.870 10 C -0.436 4.436 11 H 0.091 0.909 12 C 0.029 3.971 13 N -0.809 5.809 14 Si 0.986 3.014 15 H -0.263 1.263 16 H -0.259 1.259 17 H -0.257 1.257 18 C -0.312 4.312 19 C 0.378 3.622 20 O -0.511 6.511 21 H 0.095 0.905 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.165 0.835 25 H 0.187 0.813 26 H 0.090 0.910 27 H 0.294 0.706 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.390 5.001 2.048 9.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.041 3.959 3 C -0.233 4.233 4 C -0.106 4.106 5 C -0.374 4.374 6 S 0.249 5.751 7 C -0.196 4.196 8 C -0.212 4.212 9 C 0.123 3.877 10 C -0.465 4.465 11 H 0.109 0.891 12 C -0.188 4.188 13 N -0.434 5.434 14 Si 0.806 3.194 15 H -0.188 1.188 16 H -0.183 1.183 17 H -0.180 1.180 18 C -0.315 4.315 19 C 0.243 3.757 20 O -0.390 6.390 21 H 0.113 0.887 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.182 0.818 25 H 0.204 0.796 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.577 5.326 1.817 7.923 hybrid contribution -0.156 -0.989 -0.169 1.015 sum -5.733 4.337 1.648 7.375 Atomic orbital electron populations 1.21033 0.88123 1.04262 1.04087 1.20245 0.96747 0.89664 0.89234 1.18102 0.91099 0.94640 1.19422 1.20086 1.01348 0.89654 0.99537 1.25019 0.93338 1.03600 1.15411 1.83817 1.10943 0.97870 1.82453 1.22838 0.97315 0.96486 1.02927 1.20307 0.97621 0.90235 1.13023 1.18736 0.90920 0.92555 0.85460 1.20008 1.03535 0.98701 1.24218 0.89118 1.26994 0.98312 1.00815 0.92726 1.69785 1.22647 1.33736 1.17188 0.85141 0.76875 0.77181 0.80233 1.18808 1.18336 1.18015 1.21726 0.93887 0.95728 1.20109 1.23995 0.95066 0.86062 0.70539 1.90455 1.74133 1.35899 1.38554 0.88650 0.89691 0.89828 0.81774 0.79588 0.89225 0.89504 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 9.23 71.23 0.66 -2.32 15 2 C 0.04 1.69 5.98 -19.06 -0.11 1.58 15 3 C -0.23 -9.41 5.83 -21.33 -0.12 -9.54 15 4 C -0.08 -2.54 9.52 21.77 0.21 -2.34 15 5 C -0.24 -7.73 11.08 66.70 0.74 -6.99 15 6 S -0.01 -0.41 23.29 -56.49 -1.32 -1.72 15 7 C -0.08 -3.84 6.44 23.03 0.15 -3.69 15 8 C -0.19 -9.99 8.65 22.94 0.20 -9.79 15 9 C 0.13 7.06 5.59 -19.97 -0.11 6.95 15 10 C -0.44 -24.10 7.65 23.27 0.18 -23.93 15 11 H 0.09 5.09 6.20 -2.91 -0.02 5.07 15 12 C 0.03 1.49 5.21 85.35 0.44 1.94 15 13 N -0.81 -43.13 11.42 21.88 0.25 -42.88 15 14 Si 0.99 39.77 29.58 68.60 2.03 41.80 15 15 H -0.26 -10.44 7.11 99.48 0.71 -9.73 15 16 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 17 H -0.26 -10.18 7.11 99.48 0.71 -9.48 15 18 C -0.31 -14.35 6.03 -18.81 -0.11 -14.46 15 19 C 0.38 15.38 10.75 69.92 0.75 16.14 15 20 O -0.51 -25.03 14.66 -3.33 -0.05 -25.08 15 21 H 0.10 1.98 8.14 -2.39 -0.02 1.96 15 22 H 0.08 1.81 7.04 -2.39 -0.02 1.79 15 23 H 0.08 1.81 6.34 -2.39 -0.02 1.80 15 24 H 0.16 3.97 7.26 -2.91 -0.02 3.95 15 25 H 0.19 4.43 8.06 -2.91 -0.02 4.41 15 26 H 0.09 5.13 6.82 -2.91 -0.02 5.11 15 27 H 0.29 14.11 8.29 -92.70 -0.77 13.35 15 28 H 0.13 3.73 6.40 -2.91 -0.02 3.71 15 Total: -1.00 -66.35 256.77 4.98 -61.38 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.20 Total: 12.97 kcal Atomic # 6 Polarization: -49.32 SS G_CDS: 2.86 Total: -46.46 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.25 Total: -42.88 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.05 Total: -25.08 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -1.32 Total: -1.72 kcal Total: -66.35 4.98 -61.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396337651.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.355 kcal (2) G-P(sol) polarization free energy of solvation -66.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds