Wall clock time and date at job start Mon Mar 30 2020 05:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39714 * 120.14452 * 2 1 4 4 C 1.47006 * 119.82799 * 359.97317 * 3 2 1 5 5 O 1.21282 * 119.99973 * 354.75064 * 4 3 2 6 6 C 1.39403 * 120.34504 * 179.97438 * 3 2 1 7 7 C 1.40906 * 120.78138 * 0.26950 * 6 3 2 8 8 C 1.45583 * 129.00845 * 180.32673 * 7 6 3 9 9 C 1.31759 * 114.90262 * 179.62140 * 8 7 6 10 10 S 1.75281 * 111.39978 * 359.77077 * 9 8 7 11 11 C 1.39650 * 119.20133 * 359.47615 * 7 6 3 12 12 C 1.39918 * 120.14835 * 179.97438 * 2 1 3 13 13 C 1.41035 * 119.99398 * 0.02562 * 12 2 1 14 14 H 1.07998 * 119.99891 * 37.87311 * 13 12 2 15 15 C 1.39905 * 119.99648 * 217.87358 * 13 12 2 16 16 N 1.30873 * 120.00700 * 21.81277 * 15 13 12 17 17 Si 1.86809 * 119.99573 * 201.81229 * 15 13 12 18 18 H 1.48495 * 109.47075 * 90.00126 * 17 15 13 19 19 H 1.48500 * 109.46900 * 210.00179 * 17 15 13 20 20 H 1.48495 * 109.46990 * 329.99606 * 17 15 13 21 21 H 1.08994 * 109.47102 * 83.53609 * 1 2 3 22 22 H 1.09007 * 109.46731 * 203.53561 * 1 2 3 23 23 H 1.09004 * 109.46890 * 323.53010 * 1 2 3 24 24 H 1.07993 * 120.00302 * 174.74732 * 4 3 2 25 25 H 1.08003 * 119.60752 * 180.02562 * 6 3 2 26 26 H 1.08010 * 122.55351 * 359.39276 * 8 7 6 27 27 H 1.07999 * 124.29974 * 179.78279 * 9 8 7 28 28 H 0.96998 * 120.00519 * 182.98306 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.2082 0.0000 4 6 1.4730 2.4809 -0.0006 5 8 0.2641 2.4825 -0.0972 6 6 3.6027 1.2131 0.0005 7 6 4.3280 0.0050 -0.0046 8 6 5.7696 -0.1983 0.0015 9 6 6.1520 -1.4591 0.0020 10 16 4.7760 -2.5449 0.0016 11 6 3.6337 -1.2066 0.0009 12 6 2.2098 -1.2099 0.0005 13 6 1.5076 -2.4331 0.0005 14 1 0.5987 -2.5339 -0.5740 15 6 1.9886 -3.5157 0.7448 16 7 2.8029 -3.3097 1.7484 17 14 1.4684 -5.2554 0.3060 18 1 2.4253 -5.8253 -0.6761 19 1 1.4594 -6.0934 1.5320 20 1 0.1070 -5.2303 -0.2864 21 1 -0.3633 0.1157 -1.0211 22 1 -0.3633 -0.9423 0.4104 23 1 -0.3633 0.8265 0.6109 24 1 2.0090 3.4145 0.0850 25 1 4.1330 2.1539 0.0010 26 1 6.4722 0.6220 0.0016 27 1 7.1825 -1.7825 0.0028 28 1 3.1705 -4.0626 2.2372 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396337941.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:41 Heat of formation + Delta-G solvation = -3.287862 kcal Electronic energy + Delta-G solvation = -15177.142211 eV Core-core repulsion = 12670.113701 eV Total energy + Delta-G solvation = -2507.028510 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.00714 -37.44426 -34.87915 -33.38343 -30.71504 -29.53069 -26.48206 -25.12731 -23.37488 -21.41617 -20.73692 -18.71912 -17.52084 -16.20333 -15.71620 -15.02386 -14.72890 -14.06009 -13.77307 -13.50638 -12.99255 -12.91414 -12.47835 -11.90258 -11.76738 -11.70832 -11.30896 -11.11850 -10.98161 -10.76477 -10.54260 -9.92412 -9.70281 -9.66895 -9.06099 -8.60515 -8.32523 -7.31524 -7.06946 -6.28920 -4.56208 1.69755 1.89536 2.79258 2.91922 3.04426 3.07065 3.34738 3.42708 3.44601 3.87527 4.47415 4.98745 5.21674 5.50924 5.89459 6.01330 6.18989 6.26627 6.55390 6.64997 6.76392 6.78615 6.95243 6.97432 7.06757 7.25659 7.38187 7.44787 7.74968 7.88480 8.17911 8.27125 8.55862 8.68916 10.01986 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.011804 C = 0.007720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.260352 B = 2371.425394 C = 3625.848950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.112 4.112 3 C -0.164 4.164 4 C 0.381 3.619 5 O -0.473 6.473 6 C -0.145 4.145 7 C -0.075 4.075 8 C -0.128 4.128 9 C -0.238 4.238 10 S 0.113 5.887 11 C -0.142 4.142 12 C 0.135 3.865 13 C -0.464 4.464 14 H 0.088 0.912 15 C 0.070 3.930 16 N -0.767 5.767 17 Si 0.897 3.103 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.260 1.260 21 H 0.047 0.953 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.104 0.896 26 H 0.122 0.878 27 H 0.145 0.855 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.834 2.060 -1.669 4.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.167 4.167 4 C 0.243 3.757 5 O -0.350 6.350 6 C -0.167 4.167 7 C -0.083 4.083 8 C -0.160 4.160 9 C -0.372 4.372 10 S 0.379 5.621 11 C -0.259 4.259 12 C 0.129 3.871 13 C -0.493 4.493 14 H 0.106 0.894 15 C -0.149 4.149 16 N -0.392 5.392 17 Si 0.720 3.280 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.184 1.184 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.100 0.900 25 H 0.122 0.878 26 H 0.140 0.860 27 H 0.163 0.837 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.250 0.325 -1.491 3.591 hybrid contribution 0.460 0.681 0.027 0.822 sum 3.710 1.006 -1.464 4.114 Atomic orbital electron populations 1.20697 0.91821 1.01758 1.00550 1.20020 0.95105 0.90949 1.05675 1.20008 0.93811 0.94640 1.08225 1.23921 0.88823 0.92659 0.70340 1.90417 1.17705 1.90434 1.36406 1.20329 0.91901 0.95009 1.09415 1.18950 0.91442 0.93472 1.04408 1.20770 0.93985 0.96313 1.04925 1.25292 1.03470 0.98749 1.09687 1.83877 0.92931 1.08795 1.76450 1.22805 0.97344 0.93784 1.11988 1.16716 0.87951 0.92632 0.89814 1.19403 1.09750 0.94667 1.25468 0.89375 1.25826 0.94400 1.01387 0.93333 1.69823 1.22819 1.34688 1.11878 0.86426 0.80640 0.81627 0.79265 1.18828 1.20113 1.18359 0.93448 0.92264 0.91402 0.89989 0.87774 0.86029 0.83731 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.03 8.29 36.01 0.30 -1.73 15 2 C -0.11 -2.67 5.98 -103.44 -0.62 -3.29 15 3 C -0.16 -3.51 5.84 -105.36 -0.62 -4.13 15 4 C 0.38 6.91 11.37 34.28 0.39 7.30 15 5 O -0.47 -9.69 14.09 5.56 0.08 -9.61 15 6 C -0.14 -2.98 9.82 -38.14 -0.37 -3.35 15 7 C -0.08 -1.69 6.02 -105.43 -0.64 -2.33 15 8 C -0.13 -2.49 10.39 -38.54 -0.40 -2.89 15 9 C -0.24 -4.53 11.02 28.85 0.32 -4.21 15 10 S 0.11 2.51 19.75 -107.50 -2.12 0.39 15 11 C -0.14 -3.50 5.76 -37.46 -0.22 -3.72 15 12 C 0.13 3.45 5.38 -106.61 -0.57 2.87 15 13 C -0.46 -11.74 7.62 -37.90 -0.29 -12.03 15 14 H 0.09 2.18 7.29 -52.49 -0.38 1.79 15 15 C 0.07 1.69 4.22 -17.34 -0.07 1.62 15 16 N -0.77 -18.99 10.63 55.55 0.59 -18.40 15 17 Si 0.90 18.25 29.61 -169.99 -5.03 13.22 15 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 15 19 H -0.28 -5.50 7.11 56.52 0.40 -5.10 15 20 H -0.26 -5.24 7.11 56.52 0.40 -4.84 15 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.06 1.32 6.63 -51.92 -0.34 0.97 15 23 H 0.07 1.48 5.80 -51.93 -0.30 1.17 15 24 H 0.08 1.13 8.06 -52.49 -0.42 0.71 15 25 H 0.10 1.76 8.06 -52.48 -0.42 1.33 15 26 H 0.12 1.97 8.06 -52.48 -0.42 1.54 15 27 H 0.14 2.25 8.06 -52.49 -0.42 1.83 15 28 H 0.29 6.55 8.30 -40.82 -0.34 6.21 15 LS Contribution 255.49 15.07 3.85 3.85 Total: -1.00 -27.44 255.49 -7.70 -35.15 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -2.28 Total: 1.30 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -2.79 Total: -25.89 kcal Atomic # 7 Polarization: -18.99 SS G_CDS: 0.59 Total: -18.40 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.12 Total: 0.39 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.44 -7.70 -35.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396337941.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.858 kcal (2) G-P(sol) polarization free energy of solvation -27.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds