Wall clock time and date at job start Mon Mar 30 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39714 * 120.14452 * 2 1 4 4 C 1.47006 * 119.82799 * 359.97317 * 3 2 1 5 5 O 1.21282 * 119.99973 * 354.75064 * 4 3 2 6 6 C 1.39403 * 120.34504 * 179.97438 * 3 2 1 7 7 C 1.40906 * 120.78138 * 0.26950 * 6 3 2 8 8 C 1.45583 * 129.00845 * 180.32673 * 7 6 3 9 9 C 1.31759 * 114.90262 * 179.62140 * 8 7 6 10 10 S 1.75281 * 111.39978 * 359.77077 * 9 8 7 11 11 C 1.39650 * 119.20133 * 359.47615 * 7 6 3 12 12 C 1.39918 * 120.14835 * 179.97438 * 2 1 3 13 13 C 1.41035 * 119.99398 * 0.02562 * 12 2 1 14 14 H 1.07998 * 119.99891 * 37.87311 * 13 12 2 15 15 C 1.39905 * 119.99648 * 217.87358 * 13 12 2 16 16 N 1.30873 * 120.00700 * 21.81277 * 15 13 12 17 17 Si 1.86809 * 119.99573 * 201.81229 * 15 13 12 18 18 H 1.48495 * 109.47075 * 90.00126 * 17 15 13 19 19 H 1.48500 * 109.46900 * 210.00179 * 17 15 13 20 20 H 1.48495 * 109.46990 * 329.99606 * 17 15 13 21 21 H 1.08994 * 109.47102 * 83.53609 * 1 2 3 22 22 H 1.09007 * 109.46731 * 203.53561 * 1 2 3 23 23 H 1.09004 * 109.46890 * 323.53010 * 1 2 3 24 24 H 1.07993 * 120.00302 * 174.74732 * 4 3 2 25 25 H 1.08003 * 119.60752 * 180.02562 * 6 3 2 26 26 H 1.08010 * 122.55351 * 359.39276 * 8 7 6 27 27 H 1.07999 * 124.29974 * 179.78279 * 9 8 7 28 28 H 0.96998 * 120.00519 * 182.98306 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.2082 0.0000 4 6 1.4730 2.4809 -0.0006 5 8 0.2641 2.4825 -0.0972 6 6 3.6027 1.2131 0.0005 7 6 4.3280 0.0050 -0.0046 8 6 5.7696 -0.1983 0.0015 9 6 6.1520 -1.4591 0.0020 10 16 4.7760 -2.5449 0.0016 11 6 3.6337 -1.2066 0.0009 12 6 2.2098 -1.2099 0.0005 13 6 1.5076 -2.4331 0.0005 14 1 0.5987 -2.5339 -0.5740 15 6 1.9886 -3.5157 0.7448 16 7 2.8029 -3.3097 1.7484 17 14 1.4684 -5.2554 0.3060 18 1 2.4253 -5.8253 -0.6761 19 1 1.4594 -6.0934 1.5320 20 1 0.1070 -5.2303 -0.2864 21 1 -0.3633 0.1157 -1.0211 22 1 -0.3633 -0.9423 0.4104 23 1 -0.3633 0.8265 0.6109 24 1 2.0090 3.4145 0.0850 25 1 4.1330 2.1539 0.0010 26 1 6.4722 0.6220 0.0016 27 1 7.1825 -1.7825 0.0028 28 1 3.1705 -4.0626 2.2372 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396337941.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:40 Heat of formation + Delta-G solvation = -17.598930 kcal Electronic energy + Delta-G solvation = -15177.762785 eV Core-core repulsion = 12670.113701 eV Total energy + Delta-G solvation = -2507.649085 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.59818 -39.03580 -36.53957 -35.08294 -32.41239 -31.21325 -28.18876 -26.85825 -24.99852 -22.97374 -22.39970 -20.31134 -19.25483 -17.80532 -17.38287 -16.67827 -16.35123 -15.58415 -15.34920 -15.15401 -14.64803 -14.54704 -14.15420 -13.52100 -13.43615 -13.37803 -12.99128 -12.83683 -12.70566 -12.40142 -12.18000 -11.59745 -11.38112 -11.32505 -10.75047 -10.17680 -10.02673 -9.00487 -8.83281 -8.00152 -6.40692 0.09112 0.28846 1.17681 1.29351 1.36280 1.45391 1.70407 1.78379 1.90347 2.19247 2.73648 3.43409 3.64272 4.05458 4.37340 4.55348 4.62253 4.69847 4.89284 4.97800 5.06752 5.16003 5.22553 5.24754 5.40826 5.54231 5.67648 5.81263 6.00696 6.19695 6.45056 6.70313 6.80164 6.89440 8.27507 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.011804 C = 0.007720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.260352 B = 2371.425394 C = 3625.848950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.148 4.148 3 C -0.180 4.180 4 C 0.391 3.609 5 O -0.500 6.500 6 C -0.126 4.126 7 C -0.100 4.100 8 C -0.127 4.127 9 C -0.227 4.227 10 S 0.076 5.924 11 C -0.171 4.171 12 C 0.101 3.899 13 C -0.499 4.499 14 H 0.075 0.925 15 C 0.042 3.958 16 N -0.797 5.797 17 Si 0.951 3.049 18 H -0.260 1.260 19 H -0.266 1.266 20 H -0.261 1.261 21 H 0.047 0.953 22 H 0.043 0.957 23 H 0.070 0.930 24 H 0.150 0.850 25 H 0.153 0.847 26 H 0.165 0.835 27 H 0.184 0.816 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.778 3.811 -1.786 7.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.153 4.153 3 C -0.183 4.183 4 C 0.254 3.746 5 O -0.377 6.377 6 C -0.147 4.147 7 C -0.107 4.107 8 C -0.158 4.158 9 C -0.361 4.361 10 S 0.341 5.659 11 C -0.288 4.288 12 C 0.095 3.905 13 C -0.528 4.528 14 H 0.093 0.907 15 C -0.175 4.175 16 N -0.423 5.423 17 Si 0.773 3.227 18 H -0.185 1.185 19 H -0.191 1.191 20 H -0.185 1.185 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.088 0.912 24 H 0.166 0.834 25 H 0.171 0.829 26 H 0.182 0.818 27 H 0.201 0.799 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.199 2.091 -1.609 5.830 hybrid contribution -0.055 0.310 0.038 0.317 sum 5.144 2.401 -1.572 5.891 Atomic orbital electron populations 1.20553 0.91588 1.00907 1.00404 1.20388 0.95807 0.92039 1.07083 1.20558 0.94768 0.95483 1.07442 1.24520 0.88338 0.93131 0.68653 1.90417 1.19179 1.90637 1.37447 1.20894 0.91692 0.96381 1.05748 1.19578 0.93272 0.93442 1.04449 1.21099 0.92993 0.97687 1.04022 1.25623 1.03886 0.97811 1.08766 1.83841 0.94677 1.10211 1.77148 1.23133 0.97545 0.95531 1.12598 1.17073 0.89076 0.93347 0.90977 1.19465 1.10201 0.96118 1.27028 0.90679 1.26367 0.94277 1.04070 0.92787 1.69856 1.24145 1.35590 1.12685 0.85610 0.80086 0.77768 0.79248 1.18451 1.19099 1.18488 0.93448 0.93789 0.91160 0.83388 0.82942 0.81772 0.79859 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.58 8.29 71.24 0.59 -2.99 15 2 C -0.15 -7.20 5.98 -19.10 -0.11 -7.32 15 3 C -0.18 -7.36 5.84 -20.34 -0.12 -7.48 15 4 C 0.39 12.86 11.37 70.12 0.80 13.66 15 5 O -0.50 -19.55 14.09 -3.03 -0.04 -19.59 15 6 C -0.13 -4.76 9.82 23.20 0.23 -4.53 15 7 C -0.10 -4.26 6.02 -20.39 -0.12 -4.39 15 8 C -0.13 -4.48 10.39 23.43 0.24 -4.23 15 9 C -0.23 -8.01 11.02 67.09 0.74 -7.27 15 10 S 0.08 3.36 19.75 -56.49 -1.12 2.24 15 11 C -0.17 -8.49 5.76 23.65 0.14 -8.36 15 12 C 0.10 5.34 5.38 -21.15 -0.11 5.23 15 13 C -0.50 -26.59 7.62 23.36 0.18 -26.42 15 14 H 0.08 3.99 7.29 -2.91 -0.02 3.97 15 15 C 0.04 2.09 4.22 85.24 0.36 2.45 15 16 N -0.80 -40.72 10.63 21.82 0.23 -40.49 15 17 Si 0.95 38.60 29.61 68.60 2.03 40.63 15 18 H -0.26 -10.28 7.11 99.48 0.71 -9.57 15 19 H -0.27 -10.27 7.11 99.48 0.71 -9.56 15 20 H -0.26 -10.48 7.11 99.48 0.71 -9.77 15 21 H 0.05 2.09 8.14 -2.39 -0.02 2.07 15 22 H 0.04 2.08 6.63 -2.38 -0.02 2.06 15 23 H 0.07 3.12 5.80 -2.38 -0.01 3.11 15 24 H 0.15 3.11 8.06 -2.91 -0.02 3.09 15 25 H 0.15 4.19 8.06 -2.91 -0.02 4.17 15 26 H 0.16 4.34 8.06 -2.91 -0.02 4.32 15 27 H 0.18 4.93 8.06 -2.91 -0.02 4.91 15 28 H 0.29 13.66 8.30 -92.71 -0.77 12.89 15 Total: -1.00 -62.26 255.49 5.09 -57.16 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 1.19 Total: 11.68 kcal Atomic # 6 Polarization: -54.44 SS G_CDS: 2.80 Total: -51.64 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.23 Total: -40.49 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.04 Total: -19.59 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.12 Total: 2.24 kcal Total: -62.26 5.09 -57.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396337941.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.565 kcal (2) G-P(sol) polarization free energy of solvation -62.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds