Wall clock time and date at job start Mon Mar 30 2020 05:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38732 * 119.45662 * 2 1 4 4 S 1.76102 * 130.42802 * 359.97438 * 3 2 1 5 5 C 1.75488 * 91.51314 * 180.02562 * 4 3 2 6 6 C 1.32855 * 110.73427 * 359.97438 * 5 4 3 7 7 C 1.39803 * 115.90085 * 0.02562 * 6 5 4 8 8 C 1.47687 * 128.93016 * 179.97438 * 7 6 5 9 9 C 1.46710 * 120.15741 * 0.04606 * 8 7 6 10 10 O 1.21322 * 119.99409 * 180.02562 * 9 8 7 11 11 C 1.38353 * 119.68182 * 179.72999 * 8 7 6 12 12 C 1.40297 * 119.46066 * 180.02562 * 2 1 3 13 13 C 1.41144 * 119.78090 * 0.02562 * 12 2 1 14 14 H 1.07999 * 119.99971 * 333.36107 * 13 12 2 15 15 C 1.39870 * 119.99828 * 153.35607 * 13 12 2 16 16 N 1.30890 * 120.00127 * 343.43752 * 15 13 12 17 17 Si 1.86797 * 120.00030 * 163.43946 * 15 13 12 18 18 H 1.48506 * 109.46961 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47403 * 119.99921 * 17 15 13 20 20 H 1.48503 * 109.47061 * 240.00156 * 17 15 13 21 21 H 1.09000 * 109.47121 * 269.97938 * 1 2 3 22 22 H 1.08997 * 109.46885 * 29.98448 * 1 2 3 23 23 H 1.08996 * 109.46787 * 149.98310 * 1 2 3 24 24 H 1.07996 * 124.63569 * 180.02562 * 5 4 3 25 25 H 1.08003 * 122.04826 * 180.02562 * 6 5 4 26 26 H 1.07992 * 120.00197 * 0.02562 * 9 8 7 27 27 H 1.07997 * 119.99682 * 180.26699 * 11 8 7 28 28 H 0.97001 * 120.00135 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1893 1.2080 0.0000 4 16 1.5837 2.8616 -0.0006 5 6 3.2150 3.5084 -0.0009 6 6 4.1102 2.5267 0.0000 7 6 3.5924 1.2281 0.0004 8 6 4.3160 -0.0594 0.0008 9 6 5.7829 -0.0805 0.0019 10 8 6.3742 -1.1399 0.0018 11 6 3.6037 -1.2455 0.0069 12 6 2.1971 -1.2216 -0.0005 13 6 1.4752 -2.4344 -0.0016 14 1 0.4805 -2.4712 0.4173 15 6 2.0482 -3.5887 -0.5454 16 7 3.0904 -3.4941 -1.3315 17 14 1.3260 -5.2654 -0.1497 18 1 0.1601 -5.1011 0.7553 19 1 0.8886 -5.9251 -1.4062 20 1 2.3553 -6.1030 0.5168 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5141 24 1 3.4581 4.5607 -0.0009 25 1 5.1728 2.7201 0.0004 26 1 6.3363 0.8469 0.0028 27 1 4.1276 -2.1899 0.0116 28 1 3.4880 -4.2947 -1.7083 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396337997.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:09 Heat of formation + Delta-G solvation = -8.537985 kcal Electronic energy + Delta-G solvation = -14962.530490 eV Core-core repulsion = 12455.274317 eV Total energy + Delta-G solvation = -2507.256173 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.83946 -37.47633 -35.37801 -33.17590 -31.38495 -28.98623 -26.81458 -25.52959 -22.63348 -22.43703 -19.79967 -19.51017 -17.62154 -16.15071 -15.75850 -15.33554 -14.34954 -14.13955 -13.90908 -13.55399 -13.18317 -12.93250 -12.84941 -12.18421 -11.78484 -11.61296 -11.40201 -11.24598 -11.09696 -10.79657 -10.48672 -10.14308 -9.93899 -9.73311 -9.32519 -8.90642 -8.44454 -7.47147 -7.19980 -6.81839 -4.61279 1.32312 2.20364 2.52331 2.79495 2.91415 2.92831 2.97837 3.23082 3.44383 3.68858 4.35546 5.05176 5.23121 5.61818 5.84447 6.03647 6.20847 6.23979 6.41758 6.51431 6.60463 6.69049 6.79517 6.87884 7.05169 7.08846 7.42585 7.49627 7.57904 7.79685 8.13199 8.19919 8.44494 8.50077 9.78833 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.008931 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.181568 B = 3134.543859 C = 4210.904524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.180 4.180 3 C -0.063 4.063 4 S 0.015 5.985 5 C -0.267 4.267 6 C -0.080 4.080 7 C -0.172 4.172 8 C -0.162 4.162 9 C 0.384 3.616 10 O -0.479 6.479 11 C -0.041 4.041 12 C 0.111 3.889 13 C -0.425 4.425 14 H 0.093 0.907 15 C 0.067 3.933 16 N -0.771 5.771 17 Si 0.918 3.082 18 H -0.256 1.256 19 H -0.270 1.270 20 H -0.268 1.268 21 H 0.045 0.955 22 H 0.040 0.960 23 H 0.066 0.934 24 H 0.147 0.853 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.139 0.861 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 4.490 1.498 4.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.189 4.189 3 C -0.178 4.178 4 S 0.276 5.724 5 C -0.400 4.400 6 C -0.110 4.110 7 C -0.178 4.178 8 C -0.166 4.166 9 C 0.246 3.754 10 O -0.356 6.356 11 C -0.060 4.060 12 C 0.105 3.895 13 C -0.453 4.453 14 H 0.111 0.889 15 C -0.154 4.154 16 N -0.394 5.394 17 Si 0.741 3.259 18 H -0.179 1.179 19 H -0.195 1.195 20 H -0.192 1.192 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.085 0.915 24 H 0.164 0.836 25 H 0.139 0.861 26 H 0.099 0.901 27 H 0.156 0.844 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.060 4.544 1.337 5.165 hybrid contribution 1.138 -1.083 -0.005 1.571 sum -0.922 3.461 1.332 3.821 Atomic orbital electron populations 1.20442 0.92795 1.00980 1.00063 1.18941 0.94449 0.89942 1.15550 1.22037 0.95602 0.95097 1.05071 1.83583 1.08683 0.99025 1.81152 1.24606 0.95263 1.01613 1.18513 1.19600 0.99230 0.91362 1.00830 1.18538 0.91535 0.91708 1.16012 1.21270 0.93985 0.92360 1.08956 1.23725 0.89504 0.92137 0.70062 1.90475 1.72371 1.36026 1.36679 1.21884 0.94384 0.96732 0.93048 1.17278 0.91284 0.91735 0.89245 1.19819 1.02340 0.92052 1.31117 0.88893 1.26138 0.94251 1.02312 0.92703 1.69790 1.17435 1.32813 1.19357 0.86079 0.80235 0.80007 0.79600 1.17927 1.19523 1.19237 0.93584 0.94105 0.91509 0.83552 0.86081 0.90050 0.84352 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.19 36.01 0.33 -1.39 15 2 C -0.18 -4.19 5.95 -103.66 -0.62 -4.81 15 3 C -0.06 -1.41 6.27 -38.61 -0.24 -1.65 15 4 S 0.01 0.27 22.52 -107.50 -2.42 -2.15 15 5 C -0.27 -4.65 11.11 28.88 0.32 -4.33 15 6 C -0.08 -1.48 9.76 -40.85 -0.40 -1.88 15 7 C -0.17 -3.75 6.03 -104.67 -0.63 -4.38 15 8 C -0.16 -3.67 6.06 -102.58 -0.62 -4.30 15 9 C 0.38 7.72 11.29 34.15 0.39 8.10 15 10 O -0.48 -10.99 17.13 5.52 0.09 -10.90 15 11 C -0.04 -1.03 8.15 -38.62 -0.31 -1.34 15 12 C 0.11 2.73 5.53 -107.10 -0.59 2.14 15 13 C -0.43 -10.12 8.01 -37.87 -0.30 -10.42 15 14 H 0.09 2.09 6.80 -52.49 -0.36 1.73 15 15 C 0.07 1.54 5.13 -17.34 -0.09 1.45 15 16 N -0.77 -18.60 11.01 55.54 0.61 -17.98 15 17 Si 0.92 17.06 29.59 -169.99 -5.03 12.03 15 18 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15 19 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 20 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 21 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.04 0.76 7.53 -51.93 -0.39 0.37 15 23 H 0.07 1.33 6.68 -51.93 -0.35 0.98 15 24 H 0.15 2.10 8.06 -52.49 -0.42 1.67 15 25 H 0.12 1.86 7.41 -52.48 -0.39 1.47 15 26 H 0.08 1.29 7.32 -52.49 -0.38 0.91 15 27 H 0.14 3.62 5.79 -52.49 -0.30 3.32 15 28 H 0.29 6.38 8.30 -40.82 -0.34 6.04 15 LS Contribution 260.08 15.07 3.92 3.92 Total: -1.00 -26.62 260.08 -7.75 -34.36 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -2.15 Total: 3.53 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -2.77 Total: -22.81 kcal Atomic # 7 Polarization: -18.60 SS G_CDS: 0.61 Total: -17.98 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -2.42 Total: -2.15 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.62 -7.75 -34.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396337997.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.827 kcal (2) G-P(sol) polarization free energy of solvation -26.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds