Wall clock time and date at job start Mon Mar 30 2020 05:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38732 * 119.45662 * 2 1 4 4 S 1.76102 * 130.42802 * 359.97438 * 3 2 1 5 5 C 1.75488 * 91.51314 * 180.02562 * 4 3 2 6 6 C 1.32855 * 110.73427 * 359.97438 * 5 4 3 7 7 C 1.39803 * 115.90085 * 0.02562 * 6 5 4 8 8 C 1.47687 * 128.93016 * 179.97438 * 7 6 5 9 9 C 1.46710 * 120.15741 * 0.04606 * 8 7 6 10 10 O 1.21322 * 119.99409 * 180.02562 * 9 8 7 11 11 C 1.38353 * 119.68182 * 179.72999 * 8 7 6 12 12 C 1.40297 * 119.46066 * 180.02562 * 2 1 3 13 13 C 1.41144 * 119.78090 * 0.02562 * 12 2 1 14 14 H 1.07999 * 119.99971 * 333.36107 * 13 12 2 15 15 C 1.39870 * 119.99828 * 153.35607 * 13 12 2 16 16 N 1.30890 * 120.00127 * 343.43752 * 15 13 12 17 17 Si 1.86797 * 120.00030 * 163.43946 * 15 13 12 18 18 H 1.48506 * 109.46961 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47403 * 119.99921 * 17 15 13 20 20 H 1.48503 * 109.47061 * 240.00156 * 17 15 13 21 21 H 1.09000 * 109.47121 * 269.97938 * 1 2 3 22 22 H 1.08997 * 109.46885 * 29.98448 * 1 2 3 23 23 H 1.08996 * 109.46787 * 149.98310 * 1 2 3 24 24 H 1.07996 * 124.63569 * 180.02562 * 5 4 3 25 25 H 1.08003 * 122.04826 * 180.02562 * 6 5 4 26 26 H 1.07992 * 120.00197 * 0.02562 * 9 8 7 27 27 H 1.07997 * 119.99682 * 180.26699 * 11 8 7 28 28 H 0.97001 * 120.00135 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1893 1.2080 0.0000 4 16 1.5837 2.8616 -0.0006 5 6 3.2150 3.5084 -0.0009 6 6 4.1102 2.5267 0.0000 7 6 3.5924 1.2281 0.0004 8 6 4.3160 -0.0594 0.0008 9 6 5.7829 -0.0805 0.0019 10 8 6.3742 -1.1399 0.0018 11 6 3.6037 -1.2455 0.0069 12 6 2.1971 -1.2216 -0.0005 13 6 1.4752 -2.4344 -0.0016 14 1 0.4805 -2.4712 0.4173 15 6 2.0482 -3.5887 -0.5454 16 7 3.0904 -3.4941 -1.3315 17 14 1.3260 -5.2654 -0.1497 18 1 0.1601 -5.1011 0.7553 19 1 0.8886 -5.9251 -1.4062 20 1 2.3553 -6.1030 0.5168 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5141 24 1 3.4581 4.5607 -0.0009 25 1 5.1728 2.7201 0.0004 26 1 6.3363 0.8469 0.0028 27 1 4.1276 -2.1899 0.0116 28 1 3.4880 -4.2947 -1.7083 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396337997.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:09 Heat of formation + Delta-G solvation = -22.134153 kcal Electronic energy + Delta-G solvation = -14963.120064 eV Core-core repulsion = 12455.274317 eV Total energy + Delta-G solvation = -2507.845747 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.51507 -39.15856 -36.99246 -34.82912 -33.08405 -30.64956 -28.45036 -27.22117 -24.22877 -24.11466 -21.44997 -21.09905 -19.29566 -17.75659 -17.41226 -16.92368 -15.99810 -15.77884 -15.49165 -15.25805 -14.80055 -14.56780 -14.43601 -13.77487 -13.34487 -13.18360 -13.02875 -12.86618 -12.67310 -12.35191 -12.02293 -11.79309 -11.58789 -11.33426 -11.00190 -10.55458 -10.07312 -9.15235 -8.85745 -8.41867 -6.37649 -0.30970 0.51309 0.95047 1.29208 1.37751 1.39963 1.53156 1.63166 1.83250 2.14223 2.68020 3.47544 3.54202 4.13948 4.30336 4.46389 4.59380 4.75245 4.84411 4.90291 4.96516 5.03629 5.14240 5.30654 5.35581 5.43396 5.73119 5.87165 5.89766 6.05069 6.38983 6.59508 6.73089 6.76952 8.15549 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.008931 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.181568 B = 3134.543859 C = 4210.904524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.190 4.190 3 C -0.106 4.106 4 S 0.043 5.957 5 C -0.236 4.236 6 C -0.100 4.100 7 C -0.165 4.165 8 C -0.177 4.177 9 C 0.392 3.608 10 O -0.513 6.513 11 C -0.074 4.074 12 C 0.079 3.921 13 C -0.461 4.461 14 H 0.095 0.905 15 C 0.030 3.970 16 N -0.816 5.816 17 Si 0.986 3.014 18 H -0.249 1.249 19 H -0.264 1.264 20 H -0.268 1.268 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.191 0.809 25 H 0.161 0.839 26 H 0.145 0.855 27 H 0.113 0.887 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.055 7.259 1.834 7.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.198 4.198 3 C -0.221 4.221 4 S 0.304 5.696 5 C -0.369 4.369 6 C -0.130 4.130 7 C -0.172 4.172 8 C -0.181 4.181 9 C 0.256 3.744 10 O -0.391 6.391 11 C -0.094 4.094 12 C 0.074 3.926 13 C -0.489 4.489 14 H 0.113 0.887 15 C -0.186 4.186 16 N -0.441 5.441 17 Si 0.806 3.194 18 H -0.172 1.172 19 H -0.189 1.189 20 H -0.193 1.193 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.208 0.792 25 H 0.178 0.822 26 H 0.161 0.839 27 H 0.131 0.869 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.965 7.332 1.675 7.774 hybrid contribution 1.129 -1.533 -0.088 1.906 sum -0.836 5.799 1.588 6.071 Atomic orbital electron populations 1.20415 0.91120 1.01306 1.00840 1.19347 0.95975 0.90151 1.14339 1.22456 0.96580 0.96951 1.06145 1.83511 1.09605 0.96052 1.80395 1.25262 0.93969 1.03577 1.14057 1.19886 1.01660 0.89583 1.01834 1.18997 0.91583 0.92813 1.13857 1.21706 0.95817 0.92267 1.08284 1.24352 0.88409 0.93448 0.68236 1.90472 1.72536 1.37945 1.38133 1.21778 0.94876 0.96807 0.95902 1.17598 0.91674 0.92936 0.90406 1.19968 1.02862 0.92892 1.33200 0.88674 1.26938 0.94311 1.05501 0.91870 1.69863 1.19354 1.33673 1.21170 0.85076 0.79415 0.75426 0.79468 1.17232 1.18853 1.19287 0.92441 0.92793 0.92033 0.79235 0.82167 0.83950 0.86910 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.22 9.19 71.24 0.65 -2.56 15 2 C -0.19 -8.98 5.95 -19.24 -0.11 -9.09 15 3 C -0.11 -4.64 6.27 22.90 0.14 -4.49 15 4 S 0.04 1.47 22.52 -56.49 -1.27 0.20 15 5 C -0.24 -6.89 11.11 66.64 0.74 -6.15 15 6 C -0.10 -3.23 9.76 21.47 0.21 -3.02 15 7 C -0.17 -6.90 6.03 -19.89 -0.12 -7.02 15 8 C -0.18 -8.06 6.06 -18.54 -0.11 -8.18 15 9 C 0.39 15.26 11.29 70.04 0.79 16.05 15 10 O -0.51 -23.74 17.13 -3.16 -0.05 -23.79 15 11 C -0.07 -3.87 8.15 22.90 0.19 -3.69 15 12 C 0.08 4.12 5.53 -21.47 -0.12 4.00 15 13 C -0.46 -23.16 8.01 23.38 0.19 -22.98 15 14 H 0.10 4.50 6.80 -2.91 -0.02 4.48 15 15 C 0.03 1.47 5.13 85.23 0.44 1.90 15 16 N -0.82 -41.96 11.01 21.82 0.24 -41.72 15 17 Si 0.99 36.45 29.59 68.60 2.03 38.48 15 18 H -0.25 -8.79 7.11 99.48 0.71 -8.09 15 19 H -0.26 -9.36 7.11 99.48 0.71 -8.65 15 20 H -0.27 -9.79 7.11 99.48 0.71 -9.08 15 21 H 0.06 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.05 1.96 7.53 -2.39 -0.02 1.95 15 23 H 0.06 2.50 6.68 -2.39 -0.02 2.49 15 24 H 0.19 3.99 8.06 -2.91 -0.02 3.96 15 25 H 0.16 3.88 7.41 -2.91 -0.02 3.86 15 26 H 0.14 3.86 7.32 -2.91 -0.02 3.84 15 27 H 0.11 6.37 5.79 -2.91 -0.02 6.36 15 28 H 0.29 13.74 8.30 -92.71 -0.77 12.97 15 Total: -1.00 -60.87 260.08 5.02 -55.85 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 1.20 Total: 16.20 kcal Atomic # 6 Polarization: -48.11 SS G_CDS: 2.88 Total: -45.23 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.24 Total: -41.72 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.05 Total: -23.79 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.27 Total: 0.20 kcal Total: -60.87 5.02 -55.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396337997.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.713 kcal (2) G-P(sol) polarization free energy of solvation -60.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds