Wall clock time and date at job start Mon Mar 30 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37209 * 122.45167 * 2 1 4 4 C 1.39758 * 124.84333 * 359.97438 * 3 2 1 5 5 H 1.08004 * 119.99772 * 352.78585 * 4 3 2 6 6 C 1.40415 * 119.99980 * 172.50758 * 4 3 2 7 7 N 1.30606 * 120.00082 * 6.28853 * 6 4 3 8 8 Si 1.86805 * 119.99903 * 186.28330 * 6 4 3 9 9 H 1.48499 * 109.46642 * 94.98963 * 8 6 4 10 10 H 1.48497 * 109.47060 * 214.99345 * 8 6 4 11 11 H 1.48504 * 109.46809 * 334.99532 * 8 6 4 12 12 S 1.75460 * 110.31563 * 180.25862 * 3 2 1 13 13 C 1.76023 * 91.75666 * 359.68496 * 12 3 2 14 14 C 1.39169 * 130.09857 * 180.02562 * 13 12 3 15 15 C 1.39485 * 120.14828 * 180.31214 * 14 13 12 16 16 C 1.46783 * 120.07520 * 179.97438 * 15 14 13 17 17 O 1.21323 * 120.00384 * 0.02966 * 16 15 14 18 18 C 1.40657 * 119.84530 * 359.97438 * 15 14 13 19 19 C 1.35350 * 120.47289 * 0.02562 * 18 15 14 20 20 C 1.39412 * 122.45398 * 180.02562 * 2 1 3 21 21 H 1.09008 * 109.46844 * 89.98176 * 1 2 3 22 22 H 1.09002 * 109.47320 * 209.97410 * 1 2 3 23 23 H 1.08991 * 109.47253 * 329.98010 * 1 2 3 24 24 H 0.96993 * 119.99522 * 179.97438 * 7 6 4 25 25 H 1.08000 * 119.92022 * 0.29563 * 14 13 12 26 26 H 1.07999 * 120.00307 * 180.02562 * 16 15 14 27 27 H 1.08000 * 119.75939 * 179.97438 * 18 15 14 28 28 H 1.08000 * 119.63195 * 180.02562 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2432 1.1578 0.0000 4 6 1.7038 2.4471 -0.0005 5 1 0.6394 2.5870 -0.1184 6 6 2.5450 3.5602 0.1581 7 7 3.8411 3.4010 0.1828 8 14 1.8102 5.2687 0.3336 9 1 1.6810 5.6063 1.7739 10 1 2.6961 6.2590 -0.3295 11 1 0.4694 5.2987 -0.3041 12 16 3.9586 0.7890 -0.0074 13 6 3.6415 -0.9425 -0.0007 14 6 4.5272 -2.0160 -0.0015 15 6 4.0426 -3.3239 -0.0019 16 6 4.9781 -4.4550 -0.0033 17 8 6.1744 -4.2528 -0.0035 18 6 2.6554 -3.5565 -0.0010 19 6 1.7855 -2.5195 -0.0003 20 6 2.2551 -1.1764 -0.0005 21 1 -0.3633 0.0003 -1.0278 22 1 -0.3634 -0.8902 0.5134 23 1 -0.3633 0.8897 0.5141 24 1 4.4220 4.1700 0.2920 25 1 5.5920 -1.8358 -0.0020 26 1 4.6017 -5.4672 -0.0040 27 1 2.2817 -4.5698 -0.0017 28 1 0.7231 -2.7136 0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396339001.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:19 Heat of formation + Delta-G solvation = -44.008017 kcal Electronic energy + Delta-G solvation = -14594.377844 eV Core-core repulsion = 12085.583576 eV Total energy + Delta-G solvation = -2508.794268 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.45118 -39.19789 -37.00525 -35.25957 -31.78061 -31.26871 -29.48937 -27.29614 -24.84476 -23.20004 -21.97135 -20.36046 -19.45280 -18.10389 -17.32468 -16.61506 -16.34084 -15.66995 -15.27161 -15.16464 -14.61810 -14.55567 -14.32126 -13.94806 -13.46290 -13.23335 -13.17589 -13.14839 -12.57689 -12.22089 -11.90450 -11.83859 -11.50899 -11.04052 -10.96041 -10.57586 -10.20407 -9.27133 -9.01332 -8.28599 -6.57618 -0.19246 0.75492 1.02410 1.33253 1.36977 1.53412 1.55570 1.86432 2.04557 2.09181 2.83742 3.26913 3.67720 4.08949 4.29259 4.58354 4.65124 4.77316 4.79962 4.88453 5.01578 5.10382 5.23450 5.34840 5.37760 5.52907 5.67474 5.72855 5.91433 6.04352 6.27804 6.46236 6.51468 6.74213 7.83864 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.038693 B = 0.006710 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.468180 B = 4171.972178 C = 4875.888308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.360 4.360 3 C 0.033 3.967 4 C -0.383 4.383 5 H 0.116 0.884 6 C 0.014 3.986 7 N -0.786 5.786 8 Si 1.014 2.986 9 H -0.257 1.257 10 H -0.261 1.261 11 H -0.246 1.246 12 S 0.092 5.908 13 C -0.312 4.312 14 C 0.000 4.000 15 C -0.292 4.292 16 C 0.398 3.602 17 O -0.537 6.537 18 C -0.044 4.044 19 C -0.179 4.179 20 C 0.028 3.972 21 H 0.040 0.960 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.314 0.686 25 H 0.099 0.901 26 H 0.152 0.848 27 H 0.165 0.835 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.089 -2.546 0.241 5.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.366 4.366 3 C -0.087 4.087 4 C -0.416 4.416 5 H 0.134 0.866 6 C -0.207 4.207 7 N -0.411 5.411 8 Si 0.831 3.169 9 H -0.182 1.182 10 H -0.185 1.185 11 H -0.169 1.169 12 S 0.353 5.647 13 C -0.426 4.426 14 C -0.023 4.023 15 C -0.295 4.295 16 C 0.264 3.736 17 O -0.417 6.417 18 C -0.064 4.064 19 C -0.199 4.199 20 C 0.020 3.980 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.128 0.872 25 H 0.117 0.883 26 H 0.168 0.832 27 H 0.182 0.818 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.936 -1.477 0.242 3.296 hybrid contribution -1.084 0.092 0.074 1.090 sum -4.020 -1.385 0.315 4.264 Atomic orbital electron populations 1.19831 0.89880 1.00558 0.99607 1.18894 0.96967 0.90151 1.30599 1.21781 0.94329 0.97155 0.95401 1.19921 0.97477 0.88932 1.35296 0.86591 1.27480 0.94583 1.07388 0.91295 1.68720 1.05891 1.36729 1.29730 0.84660 0.79682 0.72544 0.80012 1.18183 1.18534 1.16891 1.84764 1.07513 0.92534 1.79870 1.23646 0.97771 1.01309 1.19900 1.20642 0.97107 0.91763 0.92763 1.20608 0.96239 0.94046 1.18612 1.24352 0.86642 0.94768 0.67815 1.90462 1.21113 1.89875 1.40210 1.20862 0.90793 0.99867 0.94838 1.20783 1.00075 0.90336 1.08671 1.18416 0.91292 0.94740 0.93514 0.94147 0.92762 0.93241 0.87186 0.88316 0.83232 0.81777 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.57 9.55 71.24 0.68 -0.89 15 2 C -0.36 -17.31 5.94 -19.82 -0.12 -17.43 15 3 C 0.03 1.69 6.11 22.40 0.14 1.82 15 4 C -0.38 -17.99 8.77 23.17 0.20 -17.79 15 5 H 0.12 5.01 6.80 -2.91 -0.02 4.99 15 6 C 0.01 0.59 5.50 85.41 0.47 1.06 15 7 N -0.79 -35.81 10.63 21.91 0.23 -35.57 15 8 Si 1.01 31.66 29.57 68.60 2.03 33.69 15 9 H -0.26 -7.85 7.11 99.48 0.71 -7.14 15 10 H -0.26 -7.78 7.11 99.48 0.71 -7.07 15 11 H -0.25 -7.32 7.11 99.48 0.71 -6.61 15 12 S 0.09 4.68 20.18 -56.49 -1.14 3.54 15 13 C -0.31 -15.46 6.46 23.07 0.15 -15.31 15 14 C 0.00 -0.01 9.62 22.79 0.22 0.21 15 15 C -0.29 -10.91 5.87 -20.15 -0.12 -11.03 15 16 C 0.40 12.46 11.44 70.06 0.80 13.27 15 17 O -0.54 -21.38 17.14 -3.16 -0.05 -21.43 15 18 C -0.04 -1.43 9.69 22.19 0.21 -1.21 15 19 C -0.18 -6.87 9.59 22.61 0.22 -6.65 15 20 C 0.03 1.34 5.84 -21.42 -0.13 1.22 15 21 H 0.04 1.50 8.14 -2.38 -0.02 1.48 15 22 H 0.05 1.90 7.29 -2.39 -0.02 1.88 15 23 H 0.05 1.87 6.99 -2.39 -0.02 1.86 15 24 H 0.31 12.62 8.29 -92.71 -0.77 11.85 15 25 H 0.10 4.58 7.62 -2.91 -0.02 4.56 15 26 H 0.15 2.85 8.06 -2.91 -0.02 2.83 15 27 H 0.16 3.56 8.06 -2.91 -0.02 3.53 15 28 H 0.13 4.29 7.35 -2.91 -0.02 4.27 15 Total: -1.00 -61.09 261.80 4.99 -56.11 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 1.19 Total: 16.42 kcal Atomic # 6 Polarization: -55.48 SS G_CDS: 2.73 Total: -52.75 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.23 Total: -35.57 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.05 Total: -21.43 kcal Atomic # 14 Polarization: 31.66 SS G_CDS: 2.03 Total: 33.69 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -1.14 Total: 3.54 kcal Total: -61.09 4.99 -56.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396339001.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.101 kcal (2) G-P(sol) polarization free energy of solvation -61.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds