Wall clock time and date at job start Mon Mar 30 2020 05:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38051 * 120.00391 * 2 1 4 4 C 1.37777 * 120.52625 * 179.74508 * 3 2 1 5 5 C 1.40490 * 120.72967 * 0.55521 * 4 3 2 6 6 C 1.46720 * 129.49079 * 179.72998 * 5 4 3 7 7 C 1.40770 * 123.29669 * 359.97438 * 6 5 4 8 8 H 1.08008 * 119.99303 * 22.40394 * 7 6 5 9 9 C 1.39778 * 120.00507 * 202.40115 * 7 6 5 10 10 N 1.31034 * 119.99350 * 11.08935 * 9 7 6 11 11 Si 1.86794 * 120.00108 * 191.08609 * 9 7 6 12 12 H 1.48498 * 109.47190 * 60.00372 * 11 9 7 13 13 H 1.48508 * 109.46961 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47491 * 299.99849 * 11 9 7 15 15 C 1.36384 * 113.41066 * 179.97438 * 6 5 4 16 16 S 1.69989 * 111.95841 * 359.97438 * 15 6 5 17 17 C 1.39288 * 119.32487 * 359.70394 * 5 4 3 18 18 C 1.39501 * 120.00704 * 180.27843 * 2 1 3 19 19 C 1.46741 * 120.03528 * 359.95179 * 18 2 1 20 20 O 1.21316 * 120.00159 * 180.02562 * 19 18 2 21 21 H 1.09005 * 109.46993 * 269.72086 * 1 2 3 22 22 H 1.09000 * 109.47392 * 29.72352 * 1 2 3 23 23 H 1.08997 * 109.47148 * 149.72387 * 1 2 3 24 24 H 1.08001 * 119.73922 * 0.02562 * 3 2 1 25 25 H 1.07993 * 119.63370 * 180.26629 * 4 3 2 26 26 H 0.97004 * 119.99232 * 179.97438 * 10 9 7 27 27 H 1.08004 * 124.02341 * 179.97438 * 15 6 5 28 28 H 1.07998 * 119.99864 * 0.02562 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1955 0.0000 4 6 3.5751 1.2081 0.0053 5 6 4.3040 0.0071 -0.0009 6 6 5.7561 -0.2031 -0.0024 7 6 6.6895 0.8506 0.0021 8 1 6.4002 1.8266 0.3632 9 6 7.9905 0.6339 -0.4606 10 7 8.2838 -0.4739 -1.0960 11 14 9.3109 1.9236 -0.1732 12 1 9.4808 2.1415 1.2858 13 1 10.5941 1.4568 -0.7572 14 1 8.9076 3.1978 -0.8205 15 6 6.1130 -1.5194 -0.0085 16 16 4.7578 -2.5455 -0.0121 17 6 3.6198 -1.2061 -0.0063 18 6 2.2047 -1.2080 -0.0059 19 6 1.4719 -2.4794 -0.0110 20 8 2.0793 -3.5295 -0.0156 21 1 -0.3633 -0.0050 1.0277 22 1 -0.3634 0.8924 -0.5095 23 1 -0.3633 -0.8875 -0.5181 24 1 1.6532 2.1284 0.0004 25 1 4.1005 2.1516 0.0096 26 1 9.1866 -0.6241 -1.4174 27 1 7.1352 -1.8683 -0.0109 28 1 0.3920 -2.4801 -0.0106 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396339063.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:54 Heat of formation + Delta-G solvation = -25.219918 kcal Electronic energy + Delta-G solvation = -14805.361349 eV Core-core repulsion = 12297.381794 eV Total energy + Delta-G solvation = -2507.979555 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.78363 -39.25497 -37.00339 -34.63387 -32.32967 -31.39272 -28.29774 -27.05892 -25.61961 -23.22670 -21.91637 -21.12086 -18.55322 -18.32610 -17.40687 -16.85013 -16.21134 -15.50214 -15.46480 -15.27254 -15.10530 -14.53683 -14.26628 -13.71628 -13.31025 -13.17023 -12.95160 -12.93353 -12.58449 -12.36049 -12.09848 -11.94447 -11.52266 -11.29060 -11.03702 -10.42023 -10.18241 -9.05264 -8.64750 -8.52782 -6.33537 -0.32474 0.30039 1.14625 1.24414 1.35304 1.47845 1.51630 1.97500 2.04871 2.20880 2.80817 3.35169 3.43894 3.92515 4.05137 4.25073 4.37138 4.61378 4.71565 4.94937 4.97567 5.00975 5.16728 5.30174 5.36774 5.46159 5.56358 5.67598 5.94865 6.09169 6.49400 6.59314 6.79507 6.92060 8.38017 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031980 B = 0.007649 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.340394 B = 3659.839720 C = 4474.301483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.008 4.008 3 C -0.151 4.151 4 C -0.045 4.045 5 C -0.126 4.126 6 C 0.057 3.943 7 C -0.467 4.467 8 H 0.083 0.917 9 C 0.021 3.979 10 N -0.835 5.835 11 Si 0.991 3.009 12 H -0.260 1.260 13 H -0.273 1.273 14 H -0.253 1.253 15 C -0.412 4.412 16 S 0.083 5.917 17 C -0.117 4.117 18 C -0.205 4.205 19 C 0.377 3.623 20 O -0.501 6.501 21 H 0.098 0.902 22 H 0.095 0.905 23 H 0.087 0.913 24 H 0.169 0.831 25 H 0.129 0.871 26 H 0.283 0.717 27 H 0.133 0.867 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.856 4.971 1.638 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.010 4.010 3 C -0.172 4.172 4 C -0.065 4.065 5 C -0.135 4.135 6 C 0.049 3.951 7 C -0.500 4.500 8 H 0.101 0.899 9 C -0.191 4.191 10 N -0.462 5.462 11 Si 0.812 3.188 12 H -0.185 1.185 13 H -0.197 1.197 14 H -0.177 1.177 15 C -0.548 4.548 16 S 0.347 5.653 17 C -0.233 4.233 18 C -0.213 4.213 19 C 0.239 3.761 20 O -0.377 6.377 21 H 0.116 0.884 22 H 0.113 0.887 23 H 0.106 0.894 24 H 0.186 0.814 25 H 0.147 0.853 26 H 0.093 0.907 27 H 0.151 0.849 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.329 2.703 1.501 13.683 hybrid contribution 1.871 1.747 -0.076 2.561 sum -11.457 4.450 1.425 12.374 Atomic orbital electron populations 1.21065 0.86395 1.05216 1.04642 1.20473 0.98194 0.90290 0.92030 1.21151 0.92325 0.99397 1.04374 1.21378 0.94984 0.96033 0.94110 1.19906 0.93773 0.93986 1.05845 1.17819 0.89765 0.93460 0.94105 1.19301 0.95533 0.97097 1.38028 0.89936 1.26837 1.01601 0.98680 0.92022 1.69978 1.21711 1.26805 1.27742 0.85112 0.75992 0.78078 0.79643 1.18484 1.19743 1.17737 1.24501 1.01105 0.97189 1.32005 1.82201 0.94822 1.09174 1.79074 1.23261 0.97737 0.97372 1.04969 1.20485 0.90042 0.98092 1.12636 1.24739 0.96834 0.85296 0.69266 1.90518 1.74406 1.35652 1.37172 0.88361 0.88661 0.89407 0.81353 0.85313 0.90713 0.84903 0.81969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 9.51 71.24 0.68 -0.89 15 2 C -0.01 -0.20 5.91 -19.60 -0.12 -0.32 15 3 C -0.15 -4.26 9.64 22.12 0.21 -4.05 15 4 C -0.05 -1.75 9.85 22.71 0.22 -1.52 15 5 C -0.13 -6.19 6.02 -20.26 -0.12 -6.32 15 6 C 0.06 3.28 5.69 -20.88 -0.12 3.16 15 7 C -0.47 -25.97 9.07 23.26 0.21 -25.76 15 8 H 0.08 4.24 7.68 -2.91 -0.02 4.22 15 9 C 0.02 1.13 5.36 85.18 0.46 1.58 15 10 N -0.84 -47.18 10.79 21.81 0.24 -46.94 15 11 Si 0.99 39.80 29.57 68.60 2.03 41.82 15 12 H -0.26 -10.16 7.11 99.48 0.71 -9.46 15 13 H -0.27 -10.55 7.11 99.48 0.71 -9.84 15 14 H -0.25 -9.55 7.11 99.48 0.71 -8.84 15 15 C -0.41 -24.25 9.51 67.39 0.64 -23.61 15 16 S 0.08 4.26 21.06 -56.49 -1.19 3.07 15 17 C -0.12 -5.49 6.31 23.33 0.15 -5.34 15 18 C -0.20 -7.26 5.90 -19.95 -0.12 -7.38 15 19 C 0.38 11.37 10.86 70.04 0.76 12.13 15 20 O -0.50 -19.87 15.78 -3.14 -0.05 -19.92 15 21 H 0.10 0.99 8.14 -2.38 -0.02 0.97 15 22 H 0.09 0.92 8.08 -2.39 -0.02 0.90 15 23 H 0.09 0.89 6.30 -2.39 -0.02 0.88 15 24 H 0.17 3.15 8.06 -2.91 -0.02 3.13 15 25 H 0.13 4.65 7.87 -2.91 -0.02 4.63 15 26 H 0.28 14.57 8.30 -92.71 -0.77 13.80 15 27 H 0.13 8.38 6.26 -2.91 -0.02 8.36 15 28 H 0.16 2.72 6.32 -2.91 -0.02 2.70 15 Total: -1.00 -73.91 259.15 5.07 -68.84 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 1.19 Total: 11.44 kcal Atomic # 6 Polarization: -61.17 SS G_CDS: 2.86 Total: -58.32 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.24 Total: -46.94 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.05 Total: -19.92 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.82 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.19 Total: 3.07 kcal Total: -73.91 5.07 -68.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396339063.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.620 kcal (2) G-P(sol) polarization free energy of solvation -73.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds