Wall clock time and date at job start Mon Mar 30 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.31945 * 122.51998 * 2 1 4 4 S 1.75218 * 111.50281 * 180.02562 * 3 2 1 5 5 C 1.76143 * 92.26188 * 359.97438 * 4 3 2 6 6 C 1.39755 * 129.59912 * 179.97438 * 5 4 3 7 7 C 1.38945 * 120.70528 * 179.71281 * 6 5 4 8 8 C 1.46197 * 120.51655 * 180.30505 * 7 6 5 9 9 O 1.21399 * 120.00378 * 179.35428 * 8 7 6 10 10 C 1.47018 * 118.97080 * 0.58446 * 7 6 5 11 11 C 1.40606 * 120.46203 * 179.69316 * 10 7 6 12 12 H 1.07997 * 120.00582 * 327.03691 * 11 10 7 13 13 C 1.40233 * 119.99665 * 147.03575 * 11 10 7 14 14 N 1.30681 * 120.00027 * 340.00744 * 13 11 10 15 15 Si 1.86799 * 120.00003 * 160.00466 * 13 11 10 16 16 H 1.48502 * 109.47387 * 179.97438 * 15 13 11 17 17 H 1.48498 * 109.47619 * 300.00210 * 15 13 11 18 18 H 1.48507 * 109.47012 * 60.00249 * 15 13 11 19 19 C 1.39777 * 119.07290 * 359.42574 * 10 7 6 20 20 C 1.40413 * 109.56479 * 0.02562 * 5 4 3 21 21 H 1.09000 * 109.46645 * 269.98157 * 1 2 3 22 22 H 1.08999 * 109.46700 * 29.97543 * 1 2 3 23 23 H 1.08997 * 109.46862 * 149.98229 * 1 2 3 24 24 H 1.07995 * 124.24856 * 0.02562 * 3 2 1 25 25 H 1.08001 * 119.64982 * 0.03208 * 6 5 4 26 26 H 1.07997 * 120.00094 * 359.35541 * 8 7 6 27 27 H 0.96993 * 119.99827 * 354.32794 * 14 13 11 28 28 H 1.07999 * 119.76145 * 180.27095 * 19 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2164 1.1126 0.0000 4 16 3.9363 0.7777 -0.0007 5 6 3.6682 -0.9632 -0.0003 6 6 4.5969 -2.0075 -0.0010 7 6 4.1756 -3.3316 0.0056 8 6 5.1508 -4.4208 0.0115 9 8 4.7724 -5.5742 0.0291 10 6 2.7341 -3.6203 0.0002 11 6 2.2731 -4.9486 0.0000 12 1 2.8394 -5.7167 -0.5055 13 6 1.0780 -5.2760 0.6565 14 7 0.5980 -4.4804 1.5754 15 14 0.1719 -6.8494 0.2174 16 1 -1.0536 -6.9633 1.0482 17 1 -0.2042 -6.8198 -1.2189 18 1 1.0536 -8.0165 0.4742 19 6 1.8282 -2.5558 0.0008 20 6 2.2890 -1.2265 -0.0002 21 1 -0.3632 -0.0003 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5141 24 1 1.7904 2.1050 0.0004 25 1 5.6533 -1.7831 -0.0014 26 1 6.2077 -4.1994 0.0003 27 1 1.1084 -3.7069 1.8619 28 1 0.7668 -2.7551 0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396339307.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:11 Heat of formation + Delta-G solvation = -28.722877 kcal Electronic energy + Delta-G solvation = -14979.182320 eV Core-core repulsion = 12471.050865 eV Total energy + Delta-G solvation = -2508.131455 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.38066 -39.08834 -36.92917 -35.36509 -31.50419 -31.05236 -29.00072 -27.32312 -25.15432 -23.03054 -22.09380 -20.75048 -19.27606 -18.33043 -17.42304 -16.56592 -15.91675 -15.74730 -15.44701 -15.13799 -14.74395 -14.57924 -14.37270 -13.82785 -13.59373 -13.55998 -13.28378 -12.90248 -12.60924 -12.03908 -11.98576 -11.76180 -11.55168 -11.30715 -10.99290 -10.37106 -10.12197 -9.46923 -9.10625 -8.51390 -6.50889 -0.34559 0.68351 0.91549 1.03194 1.26924 1.46595 1.60317 1.76504 2.01800 2.26047 2.58738 3.35263 3.68156 3.86404 3.97513 4.28978 4.52534 4.59107 4.72761 4.75350 4.85424 4.90369 5.09041 5.17670 5.35183 5.38407 5.54365 5.64080 5.79124 5.99523 6.13212 6.61188 6.73764 6.96328 7.90335 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.023860 B = 0.008962 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.206868 B = 3123.666869 C = 4182.312344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.122 4.122 3 C -0.177 4.177 4 S 0.047 5.953 5 C -0.275 4.275 6 C 0.015 3.985 7 C -0.303 4.303 8 C 0.376 3.624 9 O -0.512 6.512 10 C 0.091 3.909 11 C -0.495 4.495 12 H 0.091 0.909 13 C -0.002 4.002 14 N -0.800 5.800 15 Si 1.116 2.884 16 H -0.264 1.264 17 H -0.259 1.259 18 H -0.265 1.265 19 C -0.215 4.215 20 C -0.025 4.025 21 H 0.071 0.929 22 H 0.094 0.906 23 H 0.049 0.951 24 H 0.194 0.806 25 H 0.147 0.853 26 H 0.132 0.868 27 H 0.285 0.715 28 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.842 8.049 -2.300 8.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C -0.310 4.310 4 S 0.308 5.692 5 C -0.389 4.389 6 C -0.008 4.008 7 C -0.307 4.307 8 C 0.242 3.758 9 O -0.392 6.392 10 C 0.086 3.914 11 C -0.522 4.522 12 H 0.109 0.891 13 C -0.220 4.220 14 N -0.423 5.423 15 Si 0.933 3.067 16 H -0.189 1.189 17 H -0.183 1.183 18 H -0.190 1.190 19 C -0.237 4.237 20 C -0.032 4.032 21 H 0.089 0.911 22 H 0.113 0.887 23 H 0.068 0.932 24 H 0.211 0.789 25 H 0.164 0.836 26 H 0.148 0.852 27 H 0.098 0.902 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.546 7.602 -1.924 7.992 hybrid contribution 0.173 0.126 -0.152 0.262 sum 1.718 7.728 -2.076 8.184 Atomic orbital electron populations 1.20489 0.88711 1.02950 1.02527 1.20114 0.97924 0.90951 1.04484 1.25097 0.96216 1.02341 1.07331 1.83200 1.05339 0.97527 1.83149 1.22186 0.96092 0.97485 1.23102 1.20663 0.98389 0.89637 0.92074 1.21859 0.94731 0.94831 1.19262 1.23878 0.94671 0.86639 0.70592 1.90451 1.84626 1.25158 1.38940 1.18791 0.91040 0.93353 0.88177 1.21154 1.07107 0.95508 1.28448 0.89150 1.28635 0.95199 1.06226 0.91891 1.70504 1.38628 1.12582 1.20576 0.83015 0.75653 0.70114 0.77955 1.18851 1.18327 1.18964 1.20889 0.97884 0.90534 1.14379 1.19449 0.92380 0.93508 0.97834 0.91081 0.88714 0.93233 0.78869 0.83583 0.85181 0.90235 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.70 10.00 71.24 0.71 -1.99 15 2 C -0.12 -4.45 5.97 -18.87 -0.11 -4.56 15 3 C -0.18 -5.42 10.75 66.95 0.72 -4.70 15 4 S 0.05 1.53 23.23 -56.49 -1.31 0.22 15 5 C -0.28 -11.40 6.46 23.17 0.15 -11.25 15 6 C 0.01 0.58 9.79 22.81 0.22 0.81 15 7 C -0.30 -14.04 6.04 -18.74 -0.11 -14.16 15 8 C 0.38 15.69 11.41 69.89 0.80 16.49 15 9 O -0.51 -25.56 14.52 -3.40 -0.05 -25.61 15 10 C 0.09 4.86 5.33 -20.03 -0.11 4.75 15 11 C -0.49 -27.26 7.82 23.33 0.18 -27.07 15 12 H 0.09 5.15 5.92 -2.91 -0.02 5.13 15 13 C 0.00 -0.10 5.02 85.35 0.43 0.32 15 14 N -0.80 -43.13 12.51 21.88 0.27 -42.85 15 15 Si 1.12 44.38 29.98 68.60 2.06 46.43 15 16 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 17 H -0.26 -9.62 7.11 99.48 0.71 -8.91 15 18 H -0.26 -10.16 7.11 99.48 0.71 -9.46 15 19 C -0.21 -10.97 7.57 23.24 0.18 -10.80 15 20 C -0.03 -1.15 6.00 -20.29 -0.12 -1.27 15 21 H 0.07 2.10 8.14 -2.39 -0.02 2.08 15 22 H 0.09 2.21 8.12 -2.39 -0.02 2.19 15 23 H 0.05 1.69 7.47 -2.39 -0.02 1.67 15 24 H 0.19 4.25 8.06 -2.91 -0.02 4.23 15 25 H 0.15 4.54 8.06 -2.91 -0.02 4.52 15 26 H 0.13 3.85 8.06 -2.91 -0.02 3.82 15 27 H 0.29 16.03 6.57 -92.71 -0.61 15.42 15 28 H 0.09 5.01 6.26 -2.91 -0.02 4.99 15 Total: -1.00 -64.14 260.36 5.25 -58.89 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 1.35 Total: 16.36 kcal Atomic # 6 Polarization: -56.37 SS G_CDS: 2.93 Total: -53.43 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.27 Total: -42.85 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.05 Total: -25.61 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.06 Total: 46.43 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.31 Total: 0.22 kcal Total: -64.14 5.25 -58.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396339307.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.164 kcal (2) G-P(sol) polarization free energy of solvation -64.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds