Wall clock time and date at job start Mon Mar 30 2020 05:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41465 * 119.97036 * 2 1 4 4 C 1.39932 * 128.43164 * 0.05534 * 3 2 1 5 5 C 1.36868 * 115.01548 * 179.97438 * 4 3 2 6 6 C 1.39915 * 124.79147 * 179.97438 * 5 4 3 7 7 H 1.08006 * 119.99665 * 354.72219 * 6 5 4 8 8 C 1.40185 * 120.00056 * 174.71571 * 6 5 4 9 9 N 1.30756 * 119.99948 * 354.70680 * 8 6 5 10 10 Si 1.86804 * 119.99879 * 174.70060 * 8 6 5 11 11 H 1.48505 * 109.46939 * 95.00454 * 10 8 6 12 12 H 1.48498 * 109.47181 * 214.99919 * 10 8 6 13 13 H 1.48496 * 109.47390 * 335.00522 * 10 8 6 14 14 S 1.75428 * 110.41733 * 0.02562 * 5 4 3 15 15 C 1.40588 * 118.70725 * 180.02562 * 3 2 1 16 16 C 1.39987 * 120.08416 * 0.02562 * 15 3 2 17 17 C 1.36080 * 120.82175 * 359.97399 * 16 15 3 18 18 C 1.38829 * 119.96081 * 180.30316 * 2 1 3 19 19 C 1.46891 * 119.95577 * 359.97438 * 18 2 1 20 20 O 1.21291 * 119.99506 * 5.81639 * 19 18 2 21 21 H 1.08990 * 109.47071 * 96.96142 * 1 2 3 22 22 H 1.09001 * 109.47033 * 216.96702 * 1 2 3 23 23 H 1.09004 * 109.46387 * 336.95952 * 1 2 3 24 24 H 1.08001 * 122.49319 * 359.97438 * 4 3 2 25 25 H 0.97006 * 119.99902 * 179.97438 * 9 8 6 26 26 H 1.07993 * 119.58656 * 179.97438 * 16 15 3 27 27 H 1.07993 * 119.88556 * 179.97438 * 17 16 15 28 28 H 1.07992 * 120.00183 * 185.81534 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2255 0.0000 4 6 1.6987 2.5266 0.0011 5 6 2.6388 3.5212 0.0013 6 6 2.3522 4.8907 0.0018 7 1 1.3299 5.2284 -0.0840 8 6 3.3918 5.8244 0.1138 9 7 4.6168 5.4171 0.3217 10 14 3.0271 7.6505 -0.0340 11 1 2.8381 8.2288 1.3207 12 1 4.1631 8.3292 -0.7077 13 1 1.7902 7.8453 -0.8322 14 16 4.2540 2.8366 -0.0006 15 6 3.6193 1.1945 -0.0006 16 6 4.2941 -0.0320 -0.0016 17 6 3.6064 -1.2062 -0.0016 18 6 2.2004 -1.2028 -0.0064 19 6 1.4641 -2.4738 -0.0125 20 8 0.2558 -2.4741 -0.1185 21 1 -0.3633 -0.1245 -1.0200 22 1 -0.3633 -0.8211 0.6180 23 1 -0.3632 0.9458 0.4022 24 1 0.6381 2.7307 0.0016 25 1 5.3363 6.0631 0.3988 26 1 5.3739 -0.0464 -0.0025 27 1 4.1424 -2.1437 -0.0029 28 1 1.9985 -3.4079 0.0773 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396339873.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:08 Heat of formation + Delta-G solvation = -35.701071 kcal Electronic energy + Delta-G solvation = -14655.683614 eV Core-core repulsion = 12147.249562 eV Total energy + Delta-G solvation = -2508.434052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79629 -39.07919 -36.74654 -34.91301 -33.32113 -31.15388 -28.67494 -26.77667 -25.20033 -23.34092 -21.86991 -20.67843 -19.57554 -17.62231 -17.43094 -17.08040 -16.17959 -15.63270 -15.53923 -15.45013 -14.41060 -14.26685 -14.11399 -13.87574 -13.55455 -13.40280 -13.14560 -13.05119 -13.03619 -12.12079 -12.05057 -11.92202 -11.62667 -11.15437 -11.03885 -10.27483 -10.07616 -9.25211 -8.96922 -8.27996 -6.57424 -0.07855 0.32397 1.25642 1.33809 1.37179 1.51815 1.60439 1.83168 1.94086 2.11622 2.85438 3.21108 3.57094 4.05753 4.21211 4.47142 4.62918 4.64847 4.79287 4.85273 4.89426 4.95333 5.16581 5.32624 5.48172 5.51018 5.62589 5.72506 5.89687 6.05076 6.26800 6.42268 6.54278 6.67942 7.93887 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.045002 B = 0.006323 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.040806 B = 4427.484975 C = 5029.440594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.067 4.067 3 C -0.028 4.028 4 C -0.386 4.386 5 C 0.024 3.976 6 C -0.421 4.421 7 H 0.098 0.902 8 C 0.020 3.980 9 N -0.800 5.800 10 Si 1.011 2.989 11 H -0.257 1.257 12 H -0.257 1.257 13 H -0.256 1.256 14 S 0.130 5.870 15 C -0.258 4.258 16 C -0.086 4.086 17 C -0.120 4.120 18 C -0.201 4.201 19 C 0.392 3.608 20 O -0.501 6.501 21 H 0.062 0.938 22 H 0.085 0.915 23 H 0.043 0.957 24 H 0.100 0.900 25 H 0.312 0.688 26 H 0.131 0.869 27 H 0.169 0.831 28 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 -5.018 -0.149 5.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.069 4.069 3 C -0.035 4.035 4 C -0.411 4.411 5 C -0.095 4.095 6 C -0.454 4.454 7 H 0.116 0.884 8 C -0.199 4.199 9 N -0.426 5.426 10 Si 0.829 3.171 11 H -0.181 1.181 12 H -0.181 1.181 13 H -0.180 1.180 14 S 0.392 5.608 15 C -0.373 4.373 16 C -0.108 4.108 17 C -0.141 4.141 18 C -0.204 4.204 19 C 0.255 3.745 20 O -0.379 6.379 21 H 0.080 0.920 22 H 0.104 0.896 23 H 0.062 0.938 24 H 0.118 0.882 25 H 0.126 0.874 26 H 0.149 0.851 27 H 0.186 0.814 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.267 -4.297 -0.167 5.400 hybrid contribution -1.511 0.541 -0.007 1.605 sum 1.757 -3.756 -0.174 4.150 Atomic orbital electron populations 1.20806 0.91113 1.01567 1.01894 1.20447 0.95976 0.91511 0.98996 1.18117 0.92549 0.93390 0.99486 1.19721 0.97782 0.90750 1.32828 1.21721 0.94924 0.97371 0.95525 1.19619 0.96581 0.89377 1.39821 0.88371 1.27242 0.93483 1.08215 0.90930 1.68730 1.02123 1.40333 1.31387 0.84714 0.79839 0.72539 0.80021 1.18081 1.18064 1.17953 1.84451 1.07289 0.90805 1.78305 1.24242 0.97533 1.01881 1.13691 1.20268 0.99603 0.90064 1.00913 1.20897 0.91946 0.98439 1.02778 1.20739 0.95606 0.94981 1.09102 1.24520 0.88242 0.93070 0.68697 1.90439 1.19295 1.90619 1.37526 0.91982 0.89621 0.93780 0.88234 0.87411 0.85088 0.81370 0.82679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.92 8.55 71.24 0.61 -3.31 15 2 C -0.07 -2.92 6.00 -18.93 -0.11 -3.03 15 3 C -0.03 -1.37 5.82 -21.50 -0.13 -1.50 15 4 C -0.39 -20.66 9.56 22.36 0.21 -20.45 15 5 C 0.02 1.27 6.09 22.35 0.14 1.41 15 6 C -0.42 -21.52 9.26 23.15 0.21 -21.30 15 7 H 0.10 4.82 7.86 -2.91 -0.02 4.79 15 8 C 0.02 0.92 5.49 85.33 0.47 1.38 15 9 N -0.80 -37.20 10.65 21.87 0.23 -36.97 15 10 Si 1.01 33.98 29.57 68.60 2.03 36.01 15 11 H -0.26 -8.29 7.11 99.48 0.71 -7.58 15 12 H -0.26 -8.03 7.11 99.48 0.71 -7.32 15 13 H -0.26 -8.54 7.11 99.48 0.71 -7.83 15 14 S 0.13 6.47 20.19 -56.49 -1.14 5.33 15 15 C -0.26 -12.19 6.49 23.27 0.15 -12.04 15 16 C -0.09 -3.27 9.98 22.19 0.22 -3.04 15 17 C -0.12 -3.78 9.72 22.34 0.22 -3.56 15 18 C -0.20 -7.07 5.85 -20.29 -0.12 -7.19 15 19 C 0.39 10.82 11.37 70.09 0.80 11.62 15 20 O -0.50 -17.19 14.08 -3.06 -0.04 -17.23 15 21 H 0.06 2.43 8.14 -2.39 -0.02 2.41 15 22 H 0.09 3.27 5.85 -2.39 -0.01 3.26 15 23 H 0.04 1.81 6.84 -2.38 -0.02 1.79 15 24 H 0.10 5.25 7.18 -2.91 -0.02 5.23 15 25 H 0.31 12.73 8.29 -92.70 -0.77 11.96 15 26 H 0.13 4.22 8.06 -2.91 -0.02 4.20 15 27 H 0.17 3.44 8.06 -2.91 -0.02 3.41 15 28 H 0.16 2.43 8.06 -2.91 -0.02 2.41 15 Total: -1.00 -62.09 258.32 4.94 -57.15 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 1.19 Total: 16.74 kcal Atomic # 6 Polarization: -63.69 SS G_CDS: 2.67 Total: -61.02 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.23 Total: -36.97 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.04 Total: -17.23 kcal Atomic # 14 Polarization: 33.98 SS G_CDS: 2.03 Total: 36.01 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -1.14 Total: 5.33 kcal Total: -62.09 4.94 -57.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396339873.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.448 kcal (2) G-P(sol) polarization free energy of solvation -62.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds