Wall clock time and date at job start Mon Mar 30 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36111 * 119.58438 * 2 1 4 4 C 1.40564 * 120.21216 * 180.02562 * 3 2 1 5 5 C 1.46892 * 119.94498 * 179.97438 * 4 3 2 6 6 O 1.21298 * 119.99744 * 179.97438 * 5 4 3 7 7 C 1.38863 * 120.10428 * 359.95192 * 4 3 2 8 8 C 1.41430 * 120.06703 * 0.02562 * 7 4 3 9 9 C 1.39935 * 128.44446 * 180.33351 * 8 7 4 10 10 C 1.36854 * 115.01915 * 180.17442 * 9 8 7 11 11 C 1.39922 * 124.79144 * 179.78902 * 10 9 8 12 12 H 1.07999 * 119.99414 * 10.52009 * 11 10 9 13 13 C 1.40185 * 120.00589 * 190.52181 * 11 10 9 14 14 N 1.30745 * 120.00445 * 174.63901 * 13 11 10 15 15 Si 1.86800 * 119.99808 * 354.64177 * 13 11 10 16 16 H 1.48499 * 109.47377 * 179.97438 * 15 13 11 17 17 H 1.48509 * 109.46840 * 299.99866 * 15 13 11 18 18 H 1.48497 * 109.47460 * 59.99803 * 15 13 11 19 19 S 1.75433 * 110.42715 * 359.52202 * 10 9 8 20 20 C 1.39939 * 119.58465 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.46702 * 270.00124 * 1 2 3 22 22 H 1.09001 * 109.47198 * 30.00110 * 1 2 3 23 23 H 1.08996 * 109.46954 * 150.00281 * 1 2 3 24 24 H 1.07991 * 119.89585 * 0.02562 * 3 2 1 25 25 H 1.07999 * 120.00371 * 359.97313 * 5 4 3 26 26 H 1.07996 * 119.96399 * 180.02562 * 7 4 3 27 27 H 1.08005 * 122.49288 * 359.97438 * 9 8 7 28 28 H 0.97006 * 119.99916 * 0.05435 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1791 1.1837 0.0000 4 6 3.5846 1.1991 -0.0005 5 6 4.3039 2.4798 -0.0011 6 8 5.5168 2.4942 -0.0011 7 6 4.2942 0.0054 -0.0001 8 6 3.6042 -1.2291 0.0004 9 6 4.1364 -2.5233 0.0073 10 6 3.2097 -3.5303 0.0021 11 6 3.5145 -4.8959 0.0031 12 1 4.5288 -5.2225 0.1790 13 6 2.5035 -5.8400 -0.2243 14 7 2.8045 -7.1081 -0.3277 15 14 0.7263 -5.2862 -0.3795 16 1 -0.1416 -6.4678 -0.6163 17 1 0.3081 -4.6074 0.8734 18 1 0.5993 -4.3432 -1.5195 19 16 1.5854 -2.8675 0.0016 20 6 2.1980 -1.2169 0.0005 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6306 2.1140 0.0004 25 1 3.7528 3.4087 -0.0015 26 1 5.3741 0.0199 -0.0001 27 1 5.1996 -2.7134 0.0129 28 1 3.7273 -7.3958 -0.2463 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396339955.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:46 Heat of formation + Delta-G solvation = -28.801437 kcal Electronic energy + Delta-G solvation = -14640.911315 eV Core-core repulsion = 12132.776453 eV Total energy + Delta-G solvation = -2508.134862 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.24445 -37.83322 -35.27724 -33.58112 -31.93310 -29.76591 -26.40218 -25.62263 -24.32677 -21.47130 -20.10365 -18.94264 -18.85202 -16.64818 -16.03167 -15.51678 -14.78145 -14.51094 -13.98402 -13.83814 -13.37196 -13.24853 -12.75126 -12.55349 -12.43458 -12.07209 -11.72082 -11.45828 -11.38559 -10.76094 -10.33023 -10.21474 -9.98193 -9.80422 -9.45842 -8.93581 -8.52953 -7.87503 -7.75446 -6.76165 -4.84667 1.23402 1.80518 2.28958 2.76996 2.89201 2.95261 3.00544 3.42619 3.44753 3.70000 4.45466 4.63929 4.81449 5.28344 5.48713 5.71722 5.77003 5.93070 6.05668 6.10997 6.28238 6.43262 6.81253 6.87951 6.95753 6.98444 7.14154 7.20376 7.39177 7.65993 7.76777 7.80325 7.94516 8.21335 9.50680 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.035881 B = 0.007592 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.163554 B = 3687.340242 C = 4443.659473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.036 4.036 3 C -0.150 4.150 4 C -0.181 4.181 5 C 0.386 3.614 6 O -0.479 6.479 7 C -0.080 4.080 8 C 0.015 3.985 9 C -0.360 4.360 10 C 0.062 3.938 11 C -0.432 4.432 12 H 0.098 0.902 13 C 0.048 3.952 14 N -0.784 5.784 15 Si 0.917 3.083 16 H -0.223 1.223 17 H -0.201 1.201 18 H -0.199 1.199 19 S -0.018 6.018 20 C -0.197 4.197 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.116 0.884 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.171 8.022 0.148 10.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.040 4.040 3 C -0.171 4.171 4 C -0.184 4.184 5 C 0.247 3.753 6 O -0.354 6.354 7 C -0.101 4.101 8 C 0.007 3.993 9 C -0.384 4.384 10 C -0.056 4.056 11 C -0.466 4.466 12 H 0.116 0.884 13 C -0.177 4.177 14 N -0.404 5.404 15 Si 0.739 3.261 16 H -0.146 1.146 17 H -0.127 1.127 18 H -0.124 1.124 19 S 0.238 5.762 20 C -0.309 4.309 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.134 0.866 25 H 0.110 0.890 26 H 0.136 0.864 27 H 0.131 0.869 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.357 6.695 -0.112 10.709 hybrid contribution 3.048 0.906 0.292 3.194 sum -5.309 7.601 0.180 9.274 Atomic orbital electron populations 1.20788 0.92127 1.02110 1.01882 1.18686 0.94719 0.91005 0.99592 1.20172 0.92365 0.96479 1.08067 1.20293 0.94545 0.94833 1.08711 1.23952 0.88976 0.92675 0.69698 1.90480 1.17766 1.90889 1.36304 1.21177 0.98889 0.90249 0.99739 1.18024 0.91405 0.93497 0.96350 1.19555 0.98298 0.89336 1.31183 1.21265 0.91858 0.96863 0.95574 1.20439 0.98795 0.89716 1.37679 0.88404 1.27398 1.06763 0.92872 0.90621 1.70521 1.24681 1.16260 1.28940 0.84576 0.74594 0.82039 0.84885 1.14587 1.12714 1.12357 1.84525 1.10781 0.98709 1.82179 1.22937 0.96381 0.97051 1.14563 0.91536 0.91848 0.91952 0.86609 0.89024 0.86434 0.86856 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 9.84 36.01 0.35 -1.29 15 2 C -0.04 -0.66 5.86 -104.75 -0.61 -1.27 15 3 C -0.15 -2.50 9.33 -39.47 -0.37 -2.87 15 4 C -0.18 -3.25 5.85 -105.29 -0.62 -3.87 15 5 C 0.39 5.94 11.43 34.23 0.39 6.33 15 6 O -0.48 -9.00 17.12 5.54 0.09 -8.90 15 7 C -0.08 -1.68 9.64 -38.14 -0.37 -2.05 15 8 C 0.01 0.34 5.85 -107.14 -0.63 -0.29 15 9 C -0.36 -8.84 10.14 -39.45 -0.40 -9.24 15 10 C 0.06 1.53 5.94 -39.45 -0.23 1.29 15 11 C -0.43 -10.82 9.70 -38.22 -0.37 -11.19 15 12 H 0.10 2.49 8.06 -52.49 -0.42 2.07 15 13 C 0.05 1.15 5.52 -17.28 -0.10 1.06 15 14 N -0.78 -18.98 13.65 55.56 0.76 -18.22 15 15 Si 0.92 18.30 24.49 -169.99 -4.16 14.14 15 16 H -0.22 -4.19 7.11 56.52 0.40 -3.79 15 17 H -0.20 -3.81 6.31 60.24 0.38 -3.43 15 18 H -0.20 -3.83 6.34 59.42 0.38 -3.45 15 19 S -0.02 -0.40 14.52 -107.50 -1.56 -1.97 15 20 C -0.20 -4.31 6.32 -38.04 -0.24 -4.55 15 21 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.06 0.76 8.07 -51.93 -0.42 0.34 15 23 H 0.06 0.94 7.54 -51.93 -0.39 0.55 15 24 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 25 H 0.09 0.99 8.06 -52.49 -0.42 0.56 15 26 H 0.12 2.44 7.60 -52.49 -0.40 2.04 15 27 H 0.11 2.72 8.06 -52.48 -0.42 2.30 15 28 H 0.29 6.86 8.72 -40.82 -0.36 6.51 15 LS Contribution 257.28 15.07 3.88 3.88 Total: -1.00 -27.05 257.28 -6.70 -33.76 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -2.52 Total: 5.24 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: -3.19 Total: -27.93 kcal Atomic # 7 Polarization: -18.98 SS G_CDS: 0.76 Total: -18.22 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -4.16 Total: 14.14 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -1.56 Total: -1.97 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.05 -6.70 -33.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396339955.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.956 kcal (2) G-P(sol) polarization free energy of solvation -27.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds