Wall clock time and date at job start Mon Mar 30 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36111 * 119.58438 * 2 1 4 4 C 1.40564 * 120.21216 * 180.02562 * 3 2 1 5 5 C 1.46892 * 119.94498 * 179.97438 * 4 3 2 6 6 O 1.21298 * 119.99744 * 179.97438 * 5 4 3 7 7 C 1.38863 * 120.10428 * 359.95192 * 4 3 2 8 8 C 1.41430 * 120.06703 * 0.02562 * 7 4 3 9 9 C 1.39935 * 128.44446 * 180.33351 * 8 7 4 10 10 C 1.36854 * 115.01915 * 180.17442 * 9 8 7 11 11 C 1.39922 * 124.79144 * 179.78902 * 10 9 8 12 12 H 1.07999 * 119.99414 * 10.52009 * 11 10 9 13 13 C 1.40185 * 120.00589 * 190.52181 * 11 10 9 14 14 N 1.30745 * 120.00445 * 174.63901 * 13 11 10 15 15 Si 1.86800 * 119.99808 * 354.64177 * 13 11 10 16 16 H 1.48499 * 109.47377 * 179.97438 * 15 13 11 17 17 H 1.48509 * 109.46840 * 299.99866 * 15 13 11 18 18 H 1.48497 * 109.47460 * 59.99803 * 15 13 11 19 19 S 1.75433 * 110.42715 * 359.52202 * 10 9 8 20 20 C 1.39939 * 119.58465 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.46702 * 270.00124 * 1 2 3 22 22 H 1.09001 * 109.47198 * 30.00110 * 1 2 3 23 23 H 1.08996 * 109.46954 * 150.00281 * 1 2 3 24 24 H 1.07991 * 119.89585 * 0.02562 * 3 2 1 25 25 H 1.07999 * 120.00371 * 359.97313 * 5 4 3 26 26 H 1.07996 * 119.96399 * 180.02562 * 7 4 3 27 27 H 1.08005 * 122.49288 * 359.97438 * 9 8 7 28 28 H 0.97006 * 119.99916 * 0.05435 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1791 1.1837 0.0000 4 6 3.5846 1.1991 -0.0005 5 6 4.3039 2.4798 -0.0011 6 8 5.5168 2.4942 -0.0011 7 6 4.2942 0.0054 -0.0001 8 6 3.6042 -1.2291 0.0004 9 6 4.1364 -2.5233 0.0073 10 6 3.2097 -3.5303 0.0021 11 6 3.5145 -4.8959 0.0031 12 1 4.5288 -5.2225 0.1790 13 6 2.5035 -5.8400 -0.2243 14 7 2.8045 -7.1081 -0.3277 15 14 0.7263 -5.2862 -0.3795 16 1 -0.1416 -6.4678 -0.6163 17 1 0.3081 -4.6074 0.8734 18 1 0.5993 -4.3432 -1.5195 19 16 1.5854 -2.8675 0.0016 20 6 2.1980 -1.2169 0.0005 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6306 2.1140 0.0004 25 1 3.7528 3.4087 -0.0015 26 1 5.3741 0.0199 -0.0001 27 1 5.1996 -2.7134 0.0129 28 1 3.7273 -7.3958 -0.2463 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396339955.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:46 Heat of formation + Delta-G solvation = -44.601583 kcal Electronic energy + Delta-G solvation = -14641.596461 eV Core-core repulsion = 12132.776453 eV Total energy + Delta-G solvation = -2508.820007 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.70667 -39.30543 -37.00787 -35.27854 -33.35252 -31.47340 -27.74527 -27.31238 -25.77436 -23.10263 -21.64940 -20.65231 -20.50172 -18.22944 -17.46406 -17.13810 -16.31720 -16.01193 -15.39646 -15.36038 -14.99719 -14.73607 -14.29845 -14.10643 -13.90458 -13.69860 -13.12694 -12.96648 -12.76728 -12.40517 -11.97376 -11.87085 -11.64951 -11.51353 -10.81395 -10.54523 -10.09835 -9.71641 -9.46864 -8.41817 -6.74167 -0.21809 0.15016 0.66578 1.08382 1.23060 1.34009 1.47498 1.81754 1.84297 2.10119 2.75300 3.09314 3.45890 3.92240 4.16883 4.41962 4.53245 4.54862 4.74733 4.82435 4.89830 5.10061 5.11393 5.19459 5.26124 5.36653 5.42487 5.63332 5.65804 5.88282 6.03834 6.20485 6.41114 6.57522 7.66264 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.035881 B = 0.007592 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.163554 B = 3687.340242 C = 4443.659473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.047 4.047 3 C -0.115 4.115 4 C -0.181 4.181 5 C 0.398 3.602 6 O -0.516 6.516 7 C -0.108 4.108 8 C -0.018 4.018 9 C -0.385 4.385 10 C 0.038 3.962 11 C -0.474 4.474 12 H 0.066 0.934 13 C 0.021 3.979 14 N -0.806 5.806 15 Si 0.936 3.064 16 H -0.199 1.199 17 H -0.183 1.183 18 H -0.187 1.187 19 S 0.017 5.983 20 C -0.210 4.210 21 H 0.082 0.918 22 H 0.101 0.899 23 H 0.054 0.946 24 H 0.177 0.823 25 H 0.167 0.833 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.719 12.404 0.078 15.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.052 4.052 3 C -0.136 4.136 4 C -0.184 4.184 5 C 0.261 3.739 6 O -0.393 6.393 7 C -0.128 4.128 8 C -0.025 4.025 9 C -0.410 4.410 10 C -0.079 4.079 11 C -0.508 4.508 12 H 0.084 0.916 13 C -0.198 4.198 14 N -0.427 5.427 15 Si 0.752 3.248 16 H -0.121 1.121 17 H -0.109 1.109 18 H -0.111 1.111 19 S 0.273 5.727 20 C -0.322 4.322 21 H 0.101 0.899 22 H 0.119 0.881 23 H 0.073 0.927 24 H 0.195 0.805 25 H 0.183 0.817 26 H 0.121 0.879 27 H 0.111 0.889 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.883 11.066 -0.178 16.238 hybrid contribution 4.210 -0.047 0.334 4.224 sum -7.672 11.019 0.156 13.428 Atomic orbital electron populations 1.20891 0.88810 1.03713 1.03394 1.19312 0.97243 0.90037 0.98618 1.20879 0.91617 0.98208 1.02853 1.20906 0.95814 0.95149 1.06538 1.24749 0.88360 0.93316 0.67496 1.90501 1.19916 1.91151 1.37746 1.21271 0.98681 0.91187 1.01681 1.18152 0.92737 0.93398 0.98237 1.19717 0.97729 0.91016 1.32491 1.21374 0.94166 0.96597 0.95744 1.20358 0.98147 0.90864 1.41460 0.91561 1.28534 1.09615 0.92313 0.89363 1.70584 1.24220 1.16679 1.31195 0.84453 0.71231 0.83161 0.85989 1.12076 1.10888 1.11146 1.84147 1.07909 0.98619 1.81991 1.23415 0.96048 0.98558 1.14212 0.89918 0.88051 0.92676 0.80527 0.81681 0.87910 0.88854 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.59 9.84 71.24 0.70 -1.89 15 2 C -0.05 -1.53 5.86 -19.95 -0.12 -1.64 15 3 C -0.12 -3.09 9.33 22.34 0.21 -2.88 15 4 C -0.18 -5.79 5.85 -20.30 -0.12 -5.91 15 5 C 0.40 10.17 11.43 70.09 0.80 10.97 15 6 O -0.52 -17.99 17.12 -3.08 -0.05 -18.05 15 7 C -0.11 -4.52 9.64 23.21 0.22 -4.30 15 8 C -0.02 -0.86 5.85 -21.50 -0.13 -0.99 15 9 C -0.38 -20.29 10.14 22.36 0.23 -20.07 15 10 C 0.04 2.00 5.94 22.35 0.13 2.14 15 11 C -0.47 -25.77 9.70 23.15 0.22 -25.55 15 12 H 0.07 3.82 8.06 -2.91 -0.02 3.80 15 13 C 0.02 1.06 5.52 85.33 0.47 1.54 15 14 N -0.81 -41.23 13.65 21.87 0.30 -40.93 15 15 Si 0.94 36.45 24.49 68.60 1.68 38.13 15 16 H -0.20 -7.00 7.11 99.48 0.71 -6.29 15 17 H -0.18 -6.58 6.31 97.11 0.61 -5.97 15 18 H -0.19 -6.89 6.34 97.64 0.62 -6.27 15 19 S 0.02 0.74 14.52 -56.49 -0.82 -0.08 15 20 C -0.21 -8.86 6.32 23.27 0.15 -8.72 15 21 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.10 1.63 8.07 -2.39 -0.02 1.61 15 23 H 0.05 1.39 7.54 -2.39 -0.02 1.37 15 24 H 0.18 2.71 8.06 -2.92 -0.02 2.68 15 25 H 0.17 2.06 8.06 -2.91 -0.02 2.04 15 26 H 0.10 4.47 7.60 -2.91 -0.02 4.45 15 27 H 0.09 5.04 8.06 -2.91 -0.02 5.01 15 28 H 0.29 14.51 8.72 -92.70 -0.81 13.70 15 Total: -1.00 -65.24 257.28 4.84 -60.40 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.96 Total: 17.82 kcal Atomic # 6 Polarization: -60.07 SS G_CDS: 2.78 Total: -57.29 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.30 Total: -40.93 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.05 Total: -18.05 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 1.68 Total: 38.13 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -0.82 Total: -0.08 kcal Total: -65.24 4.84 -60.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396339955.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.803 kcal (2) G-P(sol) polarization free energy of solvation -65.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds