Wall clock time and date at job start Mon Mar 30 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40702 * 120.12386 * 2 1 4 4 C 1.41378 * 119.93672 * 359.72325 * 3 2 1 5 5 H 1.07994 * 120.00445 * 329.72979 * 4 3 2 6 6 C 1.39847 * 119.99894 * 149.72770 * 4 3 2 7 7 N 1.30904 * 119.99460 * 343.57755 * 6 4 3 8 8 Si 1.86789 * 120.00006 * 163.58124 * 6 4 3 9 9 H 1.48503 * 109.47494 * 59.99890 * 8 6 4 10 10 H 1.48503 * 109.47102 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47245 * 299.99705 * 8 6 4 12 12 C 1.40031 * 120.12325 * 179.70470 * 3 2 1 13 13 C 1.40447 * 120.54713 * 359.97438 * 12 3 2 14 14 C 1.45673 * 129.05066 * 180.02562 * 13 12 3 15 15 C 1.31617 * 114.91643 * 180.02562 * 14 13 12 16 16 S 1.75267 * 111.50789 * 0.02562 * 15 14 13 17 17 C 1.40050 * 119.22937 * 0.02779 * 13 12 3 18 18 C 1.38642 * 120.12094 * 179.72499 * 2 1 3 19 19 C 1.46828 * 119.86862 * 0.27079 * 18 2 1 20 20 O 1.21301 * 120.00100 * 177.78260 * 19 18 2 21 21 H 1.08998 * 109.47219 * 95.38788 * 1 2 3 22 22 H 1.08998 * 109.47214 * 215.38680 * 1 2 3 23 23 H 1.09003 * 109.46879 * 335.38198 * 1 2 3 24 24 H 0.97003 * 119.99277 * 180.02562 * 7 6 4 25 25 H 1.07999 * 119.72786 * 180.02562 * 12 3 2 26 26 H 1.08007 * 122.54657 * 359.97438 * 14 13 12 27 27 H 1.08000 * 124.24887 * 180.02562 * 15 14 13 28 28 H 1.08004 * 120.00226 * 357.79084 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2131 1.2170 0.0000 4 6 1.5075 2.4421 -0.0059 5 1 0.5401 2.5058 -0.4815 6 6 2.0624 3.5715 0.6042 7 7 3.0567 3.4390 1.4453 8 14 1.3847 5.2690 0.2190 9 1 -0.0505 5.3263 0.5959 10 1 2.1395 6.2898 0.9894 11 1 1.5261 5.5404 -1.2341 12 6 3.6134 1.2170 0.0062 13 6 4.3272 0.0074 0.0131 14 6 5.7679 -0.2080 0.0207 15 6 6.1398 -1.4705 0.0255 16 16 4.7572 -2.5476 0.0205 17 6 3.6222 -1.2027 0.0130 18 6 2.2027 -1.1992 0.0058 19 6 1.4684 -2.4706 0.0058 20 8 2.0741 -3.5209 -0.0298 21 1 -0.3633 -0.0965 -1.0231 22 1 -0.3633 -0.8378 0.5951 23 1 -0.3633 0.9343 0.4281 24 1 3.4413 4.2224 1.8688 25 1 4.1490 2.1548 0.0066 26 1 6.4772 0.6065 0.0214 27 1 7.1678 -1.8013 0.0317 28 1 0.3888 -2.4708 0.0375 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396340832.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:57 Heat of formation + Delta-G solvation = -6.132273 kcal Electronic energy + Delta-G solvation = -14975.725850 eV Core-core repulsion = 12468.573997 eV Total energy + Delta-G solvation = -2507.151853 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.95702 -37.54494 -35.13761 -33.49600 -30.39734 -29.99560 -26.43278 -25.10205 -23.88887 -21.50295 -20.28509 -19.29632 -16.98931 -16.68605 -15.76558 -15.15749 -14.65528 -13.99753 -13.79084 -13.63374 -13.25609 -12.94286 -12.66058 -12.11076 -12.04728 -11.49090 -11.42317 -11.28199 -11.19258 -10.74721 -10.32943 -10.09767 -9.91779 -9.69748 -9.26013 -8.86203 -8.37504 -7.39538 -6.90866 -6.85730 -4.51330 1.49834 1.97440 2.56792 2.81938 2.99888 3.01747 3.05243 3.18128 3.55333 3.82583 4.42152 4.94349 5.27503 5.48045 5.78385 5.94783 6.04735 6.13585 6.32821 6.39705 6.54138 6.61119 6.79085 6.89916 7.01079 7.18126 7.25792 7.45121 7.71617 7.81296 8.09391 8.30280 8.61496 8.66506 10.06067 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.027963 B = 0.008303 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.088851 B = 3371.453442 C = 4276.897464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.086 4.086 3 C 0.093 3.907 4 C -0.462 4.462 5 H 0.085 0.915 6 C 0.076 3.924 7 N -0.796 5.796 8 Si 0.909 3.091 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.263 1.263 12 C -0.094 4.094 13 C -0.077 4.077 14 C -0.110 4.110 15 C -0.229 4.229 16 S 0.059 5.941 17 C -0.166 4.166 18 C -0.153 4.153 19 C 0.374 3.626 20 O -0.476 6.476 21 H 0.057 0.943 22 H 0.051 0.949 23 H 0.078 0.922 24 H 0.284 0.716 25 H 0.123 0.877 26 H 0.129 0.871 27 H 0.149 0.851 28 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.765 -1.851 -1.693 2.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.089 4.089 3 C 0.089 3.911 4 C -0.492 4.492 5 H 0.103 0.897 6 C -0.142 4.142 7 N -0.422 5.422 8 Si 0.734 3.266 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.188 1.188 12 C -0.115 4.115 13 C -0.083 4.083 14 C -0.141 4.141 15 C -0.362 4.362 16 S 0.319 5.681 17 C -0.282 4.282 18 C -0.159 4.159 19 C 0.236 3.764 20 O -0.353 6.353 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.140 0.860 26 H 0.146 0.854 27 H 0.167 0.833 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.359 -3.834 -1.538 4.147 hybrid contribution 0.073 2.597 0.020 2.598 sum -0.286 -1.237 -1.518 1.979 Atomic orbital electron populations 1.20690 0.92114 1.02538 1.00801 1.20185 0.94763 0.91776 1.02139 1.17205 0.91319 0.91801 0.90761 1.19411 1.04696 0.92855 1.32250 0.89719 1.25871 0.94203 1.01380 0.92753 1.69806 1.20585 1.32653 1.19136 0.86337 0.79874 0.80639 0.79777 1.18922 1.20347 1.18771 1.21295 0.93881 0.94634 1.01735 1.19162 0.91278 0.93527 1.04322 1.20948 0.94560 0.96329 1.02264 1.24963 1.02587 0.97738 1.10877 1.84012 0.94475 1.08380 1.81196 1.22171 0.95615 0.95152 1.15246 1.19518 0.90917 0.94733 1.10719 1.24076 0.94710 0.87373 0.70265 1.90428 1.73330 1.34772 1.36736 0.92392 0.93047 0.90367 0.90554 0.85958 0.85358 0.83298 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 8.88 36.00 0.32 -1.49 15 2 C -0.09 -1.86 5.97 -103.54 -0.62 -2.48 15 3 C 0.09 2.24 5.49 -107.10 -0.59 1.65 15 4 C -0.46 -10.92 7.95 -37.79 -0.30 -11.22 15 5 H 0.08 1.87 6.94 -52.49 -0.36 1.51 15 6 C 0.08 1.75 5.10 -17.35 -0.09 1.66 15 7 N -0.80 -19.29 11.25 55.54 0.62 -18.66 15 8 Si 0.91 17.30 29.59 -169.99 -5.03 12.27 15 9 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 10 H -0.28 -5.25 7.11 56.52 0.40 -4.85 15 11 H -0.26 -5.00 7.11 56.52 0.40 -4.59 15 12 C -0.09 -2.29 8.69 -38.08 -0.33 -2.62 15 13 C -0.08 -1.79 6.02 -105.42 -0.63 -2.43 15 14 C -0.11 -2.22 10.38 -38.48 -0.40 -2.62 15 15 C -0.23 -4.26 11.00 28.87 0.32 -3.95 15 16 S 0.06 1.21 21.34 -107.50 -2.29 -1.08 15 17 C -0.17 -3.85 6.36 -37.48 -0.24 -4.09 15 18 C -0.15 -3.35 5.88 -104.85 -0.62 -3.96 15 19 C 0.37 7.15 10.86 34.20 0.37 7.52 15 20 O -0.48 -10.16 15.77 5.54 0.09 -10.08 15 21 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.05 0.76 6.55 -51.93 -0.34 0.42 15 23 H 0.08 1.39 6.56 -51.93 -0.34 1.05 15 24 H 0.28 6.32 8.30 -40.82 -0.34 5.98 15 25 H 0.12 3.06 6.47 -52.49 -0.34 2.72 15 26 H 0.13 2.29 8.06 -52.48 -0.42 1.86 15 27 H 0.15 2.25 8.06 -52.49 -0.42 1.82 15 28 H 0.09 1.38 6.39 -52.48 -0.34 1.05 15 LS Contribution 257.33 15.07 3.88 3.88 Total: -1.00 -27.14 257.33 -7.66 -34.81 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -2.12 Total: 2.88 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -2.81 Total: -24.02 kcal Atomic # 7 Polarization: -19.29 SS G_CDS: 0.62 Total: -18.66 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.29 Total: -1.08 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.14 -7.66 -34.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340832.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.674 kcal (2) G-P(sol) polarization free energy of solvation -27.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds