Wall clock time and date at job start Mon Mar 30 2020 05:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40702 * 120.12386 * 2 1 4 4 C 1.41378 * 119.93672 * 359.72325 * 3 2 1 5 5 H 1.07994 * 120.00445 * 329.72979 * 4 3 2 6 6 C 1.39847 * 119.99894 * 149.72770 * 4 3 2 7 7 N 1.30904 * 119.99460 * 343.57755 * 6 4 3 8 8 Si 1.86789 * 120.00006 * 163.58124 * 6 4 3 9 9 H 1.48503 * 109.47494 * 59.99890 * 8 6 4 10 10 H 1.48503 * 109.47102 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47245 * 299.99705 * 8 6 4 12 12 C 1.40031 * 120.12325 * 179.70470 * 3 2 1 13 13 C 1.40447 * 120.54713 * 359.97438 * 12 3 2 14 14 C 1.45673 * 129.05066 * 180.02562 * 13 12 3 15 15 C 1.31617 * 114.91643 * 180.02562 * 14 13 12 16 16 S 1.75267 * 111.50789 * 0.02562 * 15 14 13 17 17 C 1.40050 * 119.22937 * 0.02779 * 13 12 3 18 18 C 1.38642 * 120.12094 * 179.72499 * 2 1 3 19 19 C 1.46828 * 119.86862 * 0.27079 * 18 2 1 20 20 O 1.21301 * 120.00100 * 177.78260 * 19 18 2 21 21 H 1.08998 * 109.47219 * 95.38788 * 1 2 3 22 22 H 1.08998 * 109.47214 * 215.38680 * 1 2 3 23 23 H 1.09003 * 109.46879 * 335.38198 * 1 2 3 24 24 H 0.97003 * 119.99277 * 180.02562 * 7 6 4 25 25 H 1.07999 * 119.72786 * 180.02562 * 12 3 2 26 26 H 1.08007 * 122.54657 * 359.97438 * 14 13 12 27 27 H 1.08000 * 124.24887 * 180.02562 * 15 14 13 28 28 H 1.08004 * 120.00226 * 357.79084 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2131 1.2170 0.0000 4 6 1.5075 2.4421 -0.0059 5 1 0.5401 2.5058 -0.4815 6 6 2.0624 3.5715 0.6042 7 7 3.0567 3.4390 1.4453 8 14 1.3847 5.2690 0.2190 9 1 -0.0505 5.3263 0.5959 10 1 2.1395 6.2898 0.9894 11 1 1.5261 5.5404 -1.2341 12 6 3.6134 1.2170 0.0062 13 6 4.3272 0.0074 0.0131 14 6 5.7679 -0.2080 0.0207 15 6 6.1398 -1.4705 0.0255 16 16 4.7572 -2.5476 0.0205 17 6 3.6222 -1.2027 0.0130 18 6 2.2027 -1.1992 0.0058 19 6 1.4684 -2.4706 0.0058 20 8 2.0741 -3.5209 -0.0298 21 1 -0.3633 -0.0965 -1.0231 22 1 -0.3633 -0.8378 0.5951 23 1 -0.3633 0.9343 0.4281 24 1 3.4413 4.2224 1.8688 25 1 4.1490 2.1548 0.0066 26 1 6.4772 0.6065 0.0214 27 1 7.1678 -1.8013 0.0317 28 1 0.3888 -2.4708 0.0375 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396340832.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:56 Heat of formation + Delta-G solvation = -19.983598 kcal Electronic energy + Delta-G solvation = -14976.326489 eV Core-core repulsion = 12468.573997 eV Total energy + Delta-G solvation = -2507.752492 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57713 -39.16832 -36.77111 -35.18655 -32.01327 -31.65959 -28.06416 -26.74709 -25.50473 -23.08724 -21.95137 -20.90990 -18.71585 -18.30617 -17.33627 -16.80940 -16.26843 -15.58269 -15.38565 -15.22353 -14.89182 -14.51434 -14.19706 -13.70385 -13.60499 -13.08889 -12.97003 -12.83592 -12.74831 -12.26046 -11.97299 -11.73836 -11.53368 -11.33950 -10.95054 -10.43350 -10.09536 -9.08057 -8.62386 -8.52325 -6.30507 -0.12938 0.32155 0.96684 1.24668 1.41054 1.44239 1.53931 1.61328 1.94580 2.23187 2.71025 3.49467 3.54325 3.98548 4.26759 4.43941 4.55067 4.64149 4.82180 4.95584 5.01108 5.06339 5.25303 5.27135 5.29855 5.51121 5.66226 5.76197 5.99372 6.06883 6.53587 6.56841 6.87813 6.89570 8.36030 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.027963 B = 0.008303 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.088851 B = 3371.453442 C = 4276.897464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.085 4.085 3 C 0.065 3.935 4 C -0.482 4.482 5 H 0.095 0.905 6 C 0.036 3.964 7 N -0.832 5.832 8 Si 0.979 3.021 9 H -0.255 1.255 10 H -0.277 1.277 11 H -0.262 1.262 12 C -0.128 4.128 13 C -0.093 4.093 14 C -0.134 4.134 15 C -0.207 4.207 16 S 0.062 5.938 17 C -0.200 4.200 18 C -0.171 4.171 19 C 0.383 3.617 20 O -0.498 6.498 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.287 0.713 25 H 0.103 0.897 26 H 0.146 0.854 27 H 0.191 0.809 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 -2.382 -1.980 3.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.088 4.088 3 C 0.061 3.939 4 C -0.512 4.512 5 H 0.113 0.887 6 C -0.179 4.179 7 N -0.459 5.459 8 Si 0.800 3.200 9 H -0.179 1.179 10 H -0.202 1.202 11 H -0.186 1.186 12 C -0.150 4.150 13 C -0.100 4.100 14 C -0.164 4.164 15 C -0.340 4.340 16 S 0.322 5.678 17 C -0.315 4.315 18 C -0.176 4.176 19 C 0.245 3.755 20 O -0.375 6.375 21 H 0.100 0.900 22 H 0.100 0.900 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.121 0.879 26 H 0.164 0.836 27 H 0.208 0.792 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.403 -4.378 -1.827 4.947 hybrid contribution 0.430 2.658 0.111 2.694 sum -0.973 -1.721 -1.716 2.618 Atomic orbital electron populations 1.20773 0.88833 1.03511 1.02798 1.20664 0.97156 0.90851 1.00120 1.17618 0.91621 0.93307 0.91331 1.19712 1.05331 0.93397 1.32771 0.88685 1.26700 0.94238 1.04842 0.92087 1.69895 1.22005 1.33735 1.20248 0.85286 0.79494 0.75898 0.79330 1.17858 1.20195 1.18635 1.21220 0.94520 0.94420 1.04835 1.19532 0.93022 0.93440 1.04008 1.21129 0.93613 0.97762 1.03926 1.25368 1.03830 0.96526 1.08234 1.83884 0.94807 1.08086 1.81030 1.22632 0.97009 0.95973 1.15929 1.20048 0.91015 0.96378 1.10199 1.24593 0.96513 0.85564 0.68812 1.90425 1.74265 1.35193 1.37658 0.90021 0.89954 0.91113 0.90280 0.87914 0.83595 0.79213 0.83588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.29 8.88 71.23 0.63 -2.66 15 2 C -0.08 -3.64 5.97 -19.17 -0.11 -3.75 15 3 C 0.06 3.20 5.49 -21.47 -0.12 3.08 15 4 C -0.48 -23.07 7.95 23.43 0.19 -22.88 15 5 H 0.10 4.18 6.94 -2.91 -0.02 4.16 15 6 C 0.04 1.68 5.10 85.22 0.43 2.11 15 7 N -0.83 -41.63 11.25 21.81 0.25 -41.39 15 8 Si 0.98 35.48 29.59 68.60 2.03 37.51 15 9 H -0.25 -8.75 7.11 99.48 0.71 -8.04 15 10 H -0.28 -9.86 7.11 99.48 0.71 -9.16 15 11 H -0.26 -9.35 7.11 99.48 0.71 -8.65 15 12 C -0.13 -6.54 8.69 23.24 0.20 -6.34 15 13 C -0.09 -4.48 6.02 -20.38 -0.12 -4.60 15 14 C -0.13 -5.40 10.38 23.57 0.24 -5.15 15 15 C -0.21 -7.38 11.00 67.20 0.74 -6.64 15 16 S 0.06 2.48 21.34 -56.49 -1.21 1.27 15 17 C -0.20 -9.29 6.36 23.63 0.15 -9.14 15 18 C -0.17 -7.33 5.88 -20.01 -0.12 -7.45 15 19 C 0.38 13.66 10.86 70.07 0.76 14.42 15 20 O -0.50 -20.30 15.77 -3.09 -0.05 -20.35 15 21 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 22 H 0.08 2.10 6.55 -2.39 -0.02 2.08 15 23 H 0.07 2.38 6.56 -2.39 -0.02 2.37 15 24 H 0.29 13.18 8.30 -92.71 -0.77 12.41 15 25 H 0.10 5.49 6.47 -2.91 -0.02 5.47 15 26 H 0.15 5.21 8.06 -2.91 -0.02 5.19 15 27 H 0.19 5.09 8.06 -2.91 -0.02 5.06 15 28 H 0.15 3.69 6.39 -2.91 -0.02 3.67 15 Total: -1.00 -60.25 257.33 5.10 -55.16 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 1.20 Total: 16.79 kcal Atomic # 6 Polarization: -51.87 SS G_CDS: 2.88 Total: -48.99 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.25 Total: -41.39 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.21 Total: 1.27 kcal Total: -60.25 5.10 -55.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340832.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.174 kcal (2) G-P(sol) polarization free energy of solvation -60.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds