Wall clock time and date at job start Mon Mar 30 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.31751 * 122.55294 * 2 1 4 4 S 1.75283 * 111.40963 * 180.26798 * 3 2 1 5 5 C 1.75949 * 92.20723 * 0.02562 * 4 3 2 6 6 C 1.39679 * 109.70284 * 0.02562 * 5 4 3 7 7 C 1.40870 * 119.20364 * 179.97438 * 6 5 4 8 8 C 1.39441 * 120.77608 * 0.02562 * 7 6 5 9 9 C 1.47016 * 119.82401 * 180.02562 * 8 7 6 10 10 O 1.21269 * 120.00256 * 179.97438 * 9 8 7 11 11 C 1.39664 * 120.35181 * 359.97438 * 8 7 6 12 12 C 1.39958 * 119.70790 * 0.02562 * 11 8 7 13 13 C 1.41027 * 119.99517 * 180.02562 * 12 11 8 14 14 H 1.07997 * 120.00011 * 154.32677 * 13 12 11 15 15 C 1.39912 * 120.00111 * 334.32702 * 13 12 11 16 16 N 1.30876 * 119.99748 * 342.53980 * 15 13 12 17 17 Si 1.86803 * 120.00133 * 162.54369 * 15 13 12 18 18 H 1.48497 * 109.46852 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46823 * 119.99744 * 17 15 13 20 20 H 1.48491 * 109.47105 * 239.99545 * 17 15 13 21 21 H 1.08996 * 109.47297 * 269.71166 * 1 2 3 22 22 H 1.09008 * 109.46817 * 29.70795 * 1 2 3 23 23 H 1.08999 * 109.47700 * 149.70682 * 1 2 3 24 24 H 1.07995 * 124.29329 * 0.29467 * 3 2 1 25 25 H 1.08000 * 119.60868 * 179.97438 * 7 6 5 26 26 H 1.08001 * 119.99806 * 359.95838 * 9 8 7 27 27 H 1.08003 * 120.15000 * 179.97438 * 11 8 7 28 28 H 0.96999 * 119.99568 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1105 0.0000 4 16 3.9357 0.7718 -0.0076 5 6 3.6624 -0.9664 -0.0117 6 6 2.2902 -1.2273 -0.0078 7 6 1.8446 -2.5637 -0.0107 8 6 2.7555 -3.6194 -0.0168 9 6 2.2675 -5.0062 -0.0203 10 8 3.0568 -5.9269 -0.0261 11 6 4.1291 -3.3665 -0.0208 12 6 4.5910 -2.0453 -0.0180 13 6 5.9767 -1.7829 -0.0225 14 1 6.3488 -0.8528 -0.4259 15 6 6.8692 -2.7276 0.4956 16 7 6.4320 -3.6794 1.2803 17 14 8.6850 -2.6301 0.0676 18 1 8.9203 -1.4710 -0.8302 19 1 9.4784 -2.4624 1.3117 20 1 9.0994 -3.8798 -0.6191 21 1 -0.3633 -0.0052 1.0276 22 1 -0.3633 0.8927 -0.5093 23 1 -0.3634 -0.8873 -0.5184 24 1 1.7913 2.1035 0.0046 25 1 0.7851 -2.7729 -0.0072 26 1 1.2059 -5.2051 -0.0174 27 1 4.8317 -4.1867 -0.0251 28 1 7.0509 -4.3341 1.6398 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396340945.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:52 Heat of formation + Delta-G solvation = -11.721668 kcal Electronic energy + Delta-G solvation = -14819.907255 eV Core-core repulsion = 12312.513028 eV Total energy + Delta-G solvation = -2507.394227 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.75892 -37.59189 -35.30298 -33.37787 -30.54021 -28.98236 -27.37925 -25.47329 -23.69337 -21.72739 -20.30842 -18.54814 -17.38732 -16.47027 -15.45572 -15.22580 -14.65838 -14.15714 -13.86747 -13.57335 -13.25518 -13.03186 -12.66677 -12.46355 -11.99851 -11.62906 -11.44479 -11.18540 -10.98984 -10.71929 -10.49373 -10.06789 -9.92055 -9.70122 -9.36054 -8.91318 -8.30548 -7.45658 -7.00650 -6.79365 -4.52460 1.73682 1.84689 2.60037 2.83656 3.00378 3.06008 3.13248 3.33517 3.43553 3.80667 4.47302 5.04248 5.30637 5.36547 5.59123 5.80070 5.93038 5.95705 6.17274 6.26541 6.47137 6.64402 6.78470 6.94797 7.00661 7.10115 7.39160 7.60623 7.63205 7.88572 8.24447 8.29488 8.57322 8.59785 9.96316 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018826 B = 0.010192 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.909704 B = 2746.603438 C = 4144.547981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.091 4.091 3 C -0.219 4.219 4 S 0.044 5.956 5 C -0.190 4.190 6 C -0.055 4.055 7 C -0.169 4.169 8 C -0.163 4.163 9 C 0.384 3.616 10 O -0.475 6.475 11 C -0.102 4.102 12 C 0.130 3.870 13 C -0.449 4.449 14 H 0.084 0.916 15 C 0.074 3.926 16 N -0.775 5.775 17 Si 0.913 3.087 18 H -0.257 1.257 19 H -0.271 1.271 20 H -0.268 1.268 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.149 0.851 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 4.316 -1.517 7.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.353 4.353 4 S 0.308 5.692 5 C -0.306 4.306 6 C -0.061 4.061 7 C -0.191 4.191 8 C -0.166 4.166 9 C 0.244 3.756 10 O -0.350 6.350 11 C -0.126 4.126 12 C 0.124 3.876 13 C -0.477 4.477 14 H 0.102 0.898 15 C -0.146 4.146 16 N -0.399 5.399 17 Si 0.736 3.264 18 H -0.181 1.181 19 H -0.196 1.196 20 H -0.193 1.193 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.167 0.833 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.155 0.845 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.222 4.624 -1.368 6.409 hybrid contribution -0.528 -0.653 -0.004 0.840 sum -4.750 3.971 -1.372 6.341 Atomic orbital electron populations 1.20446 0.90892 1.01927 1.01609 1.19708 0.95906 0.91737 1.03149 1.24660 0.97866 1.01019 1.11720 1.83597 1.03352 1.01687 1.80562 1.22772 0.95844 0.95201 1.16753 1.18688 0.91219 0.92662 1.03540 1.20217 0.96872 0.89803 1.12222 1.20297 0.95190 0.94079 1.06986 1.23965 0.93731 0.87958 0.69910 1.90457 1.61110 1.47479 1.35967 1.21540 0.92874 0.96830 1.01322 1.16952 0.92035 0.89097 0.89477 1.19578 0.90614 1.03341 1.34161 0.89764 1.25974 1.02243 0.93880 0.92528 1.69808 1.38208 1.11580 1.20264 0.86168 0.80891 0.79785 0.79543 1.18083 1.19639 1.19321 0.91790 0.92311 0.91682 0.83332 0.87961 0.89999 0.84514 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 10.02 36.00 0.36 -0.88 15 2 C -0.09 -1.68 5.97 -103.58 -0.62 -2.30 15 3 C -0.22 -3.91 10.75 28.85 0.31 -3.60 15 4 S 0.04 0.90 22.81 -107.50 -2.45 -1.55 15 5 C -0.19 -4.57 6.37 -37.46 -0.24 -4.81 15 6 C -0.05 -1.19 6.00 -105.43 -0.63 -1.83 15 7 C -0.17 -3.50 9.49 -38.14 -0.36 -3.86 15 8 C -0.16 -3.66 5.84 -105.36 -0.62 -4.27 15 9 C 0.38 7.52 11.43 34.29 0.39 7.91 15 10 O -0.48 -10.90 17.13 5.57 0.10 -10.81 15 11 C -0.10 -2.62 8.20 -38.41 -0.31 -2.94 15 12 C 0.13 3.39 5.58 -106.61 -0.60 2.80 15 13 C -0.45 -11.56 8.81 -37.90 -0.33 -11.89 15 14 H 0.08 2.11 7.74 -52.49 -0.41 1.70 15 15 C 0.07 1.82 5.12 -17.33 -0.09 1.73 15 16 N -0.78 -19.78 10.99 55.55 0.61 -19.17 15 17 Si 0.91 18.32 29.59 -169.99 -5.03 13.29 15 18 H -0.26 -5.11 7.11 56.52 0.40 -4.70 15 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.06 0.69 8.11 -51.92 -0.42 0.27 15 23 H 0.06 0.86 7.55 -51.93 -0.39 0.47 15 24 H 0.15 2.14 8.06 -52.49 -0.42 1.72 15 25 H 0.10 1.75 7.60 -52.49 -0.40 1.35 15 26 H 0.08 1.21 8.06 -52.49 -0.42 0.79 15 27 H 0.14 3.75 5.75 -52.48 -0.30 3.45 15 28 H 0.29 6.67 8.30 -40.82 -0.34 6.33 15 LS Contribution 264.75 15.07 3.99 3.99 Total: -1.00 -28.43 264.75 -7.85 -36.28 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -2.32 Total: 1.92 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -2.74 Total: -23.94 kcal Atomic # 7 Polarization: -19.78 SS G_CDS: 0.61 Total: -19.17 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.10 Total: -10.81 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.45 Total: -1.55 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.43 -7.85 -36.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340945.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.561 kcal (2) G-P(sol) polarization free energy of solvation -28.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds