Wall clock time and date at job start Mon Mar 30 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.31751 * 122.55294 * 2 1 4 4 S 1.75283 * 111.40963 * 180.26798 * 3 2 1 5 5 C 1.75949 * 92.20723 * 0.02562 * 4 3 2 6 6 C 1.39679 * 109.70284 * 0.02562 * 5 4 3 7 7 C 1.40870 * 119.20364 * 179.97438 * 6 5 4 8 8 C 1.39441 * 120.77608 * 0.02562 * 7 6 5 9 9 C 1.47016 * 119.82401 * 180.02562 * 8 7 6 10 10 O 1.21269 * 120.00256 * 179.97438 * 9 8 7 11 11 C 1.39664 * 120.35181 * 359.97438 * 8 7 6 12 12 C 1.39958 * 119.70790 * 0.02562 * 11 8 7 13 13 C 1.41027 * 119.99517 * 180.02562 * 12 11 8 14 14 H 1.07997 * 120.00011 * 154.32677 * 13 12 11 15 15 C 1.39912 * 120.00111 * 334.32702 * 13 12 11 16 16 N 1.30876 * 119.99748 * 342.53980 * 15 13 12 17 17 Si 1.86803 * 120.00133 * 162.54369 * 15 13 12 18 18 H 1.48497 * 109.46852 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46823 * 119.99744 * 17 15 13 20 20 H 1.48491 * 109.47105 * 239.99545 * 17 15 13 21 21 H 1.08996 * 109.47297 * 269.71166 * 1 2 3 22 22 H 1.09008 * 109.46817 * 29.70795 * 1 2 3 23 23 H 1.08999 * 109.47700 * 149.70682 * 1 2 3 24 24 H 1.07995 * 124.29329 * 0.29467 * 3 2 1 25 25 H 1.08000 * 119.60868 * 179.97438 * 7 6 5 26 26 H 1.08001 * 119.99806 * 359.95838 * 9 8 7 27 27 H 1.08003 * 120.15000 * 179.97438 * 11 8 7 28 28 H 0.96999 * 119.99568 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1105 0.0000 4 16 3.9357 0.7718 -0.0076 5 6 3.6624 -0.9664 -0.0117 6 6 2.2902 -1.2273 -0.0078 7 6 1.8446 -2.5637 -0.0107 8 6 2.7555 -3.6194 -0.0168 9 6 2.2675 -5.0062 -0.0203 10 8 3.0568 -5.9269 -0.0261 11 6 4.1291 -3.3665 -0.0208 12 6 4.5910 -2.0453 -0.0180 13 6 5.9767 -1.7829 -0.0225 14 1 6.3488 -0.8528 -0.4259 15 6 6.8692 -2.7276 0.4956 16 7 6.4320 -3.6794 1.2803 17 14 8.6850 -2.6301 0.0676 18 1 8.9203 -1.4710 -0.8302 19 1 9.4784 -2.4624 1.3117 20 1 9.0994 -3.8798 -0.6191 21 1 -0.3633 -0.0052 1.0276 22 1 -0.3633 0.8927 -0.5093 23 1 -0.3634 -0.8873 -0.5184 24 1 1.7913 2.1035 0.0046 25 1 0.7851 -2.7729 -0.0072 26 1 1.2059 -5.2051 -0.0174 27 1 4.8317 -4.1867 -0.0251 28 1 7.0509 -4.3341 1.6398 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396340945.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:52 Heat of formation + Delta-G solvation = -27.521554 kcal Electronic energy + Delta-G solvation = -14820.592390 eV Core-core repulsion = 12312.513028 eV Total energy + Delta-G solvation = -2508.079362 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.43571 -39.23150 -36.94010 -35.09422 -32.29344 -30.55069 -28.75211 -27.25364 -25.34128 -23.38478 -21.95782 -20.15745 -19.06308 -18.15648 -17.14631 -16.89074 -16.30446 -15.84204 -15.40126 -15.18799 -14.72136 -14.63832 -14.19465 -13.87957 -13.59664 -13.18601 -12.98501 -12.71158 -12.57834 -12.33287 -12.17886 -11.71715 -11.53422 -11.32490 -11.13884 -10.54643 -10.01455 -9.17319 -8.79881 -8.46897 -6.41455 0.01630 0.28430 1.02354 1.20676 1.32108 1.47449 1.51452 1.67341 1.84727 2.12776 2.69859 3.50670 3.57385 3.93963 4.28170 4.48199 4.66907 4.72050 4.77820 4.94298 4.97837 5.09737 5.10976 5.26178 5.39211 5.48376 5.75614 5.81378 5.86694 6.13044 6.41624 6.67777 6.73776 6.78347 8.19252 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018826 B = 0.010192 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.909704 B = 2746.603438 C = 4144.547981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.095 4.095 3 C -0.207 4.207 4 S 0.023 5.977 5 C -0.217 4.217 6 C -0.074 4.074 7 C -0.143 4.143 8 C -0.179 4.179 9 C 0.393 3.607 10 O -0.515 6.515 11 C -0.142 4.142 12 C 0.098 3.902 13 C -0.487 4.487 14 H 0.076 0.924 15 C 0.035 3.965 16 N -0.816 5.816 17 Si 0.981 3.019 18 H -0.255 1.255 19 H -0.261 1.261 20 H -0.264 1.264 21 H 0.079 0.921 22 H 0.085 0.915 23 H 0.075 0.925 24 H 0.191 0.809 25 H 0.153 0.847 26 H 0.157 0.843 27 H 0.106 0.894 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.022 5.461 -1.755 10.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.340 4.340 4 S 0.287 5.713 5 C -0.332 4.332 6 C -0.081 4.081 7 C -0.165 4.165 8 C -0.182 4.182 9 C 0.256 3.744 10 O -0.392 6.392 11 C -0.166 4.166 12 C 0.093 3.907 13 C -0.516 4.516 14 H 0.094 0.906 15 C -0.181 4.181 16 N -0.441 5.441 17 Si 0.801 3.199 18 H -0.179 1.179 19 H -0.186 1.186 20 H -0.189 1.189 21 H 0.098 0.902 22 H 0.103 0.897 23 H 0.094 0.906 24 H 0.208 0.792 25 H 0.170 0.830 26 H 0.172 0.828 27 H 0.124 0.876 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.260 5.785 -1.607 9.421 hybrid contribution 0.153 -0.901 0.056 0.916 sum -7.107 4.884 -1.550 8.762 Atomic orbital electron populations 1.20556 0.86906 1.03863 1.03157 1.20080 0.98426 0.89930 1.02317 1.25088 0.95354 1.02990 1.10607 1.83596 1.06963 0.99827 1.80888 1.23184 0.97031 0.96573 1.16458 1.19345 0.90953 0.94780 1.03069 1.20770 0.98940 0.88777 1.07982 1.20808 0.94229 0.96810 1.06306 1.24706 0.96106 0.85797 0.67784 1.90458 1.62867 1.48171 1.37687 1.21401 0.94388 0.96048 1.04789 1.17267 0.92843 0.90150 0.90440 1.19705 0.91521 1.03969 1.36408 0.90563 1.26785 1.06361 0.93180 0.91812 1.69880 1.39679 1.12745 1.21803 0.85168 0.75542 0.79704 0.79495 1.17869 1.18568 1.18861 0.90229 0.89669 0.90618 0.79201 0.82962 0.82766 0.87609 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.88 10.02 71.24 0.71 -1.17 15 2 C -0.09 -3.13 5.97 -18.70 -0.11 -3.24 15 3 C -0.21 -6.71 10.75 67.09 0.72 -5.99 15 4 S 0.02 0.96 22.81 -56.49 -1.29 -0.33 15 5 C -0.22 -10.61 6.37 23.64 0.15 -10.45 15 6 C -0.07 -3.10 6.00 -20.39 -0.12 -3.23 15 7 C -0.14 -5.52 9.49 23.20 0.22 -5.30 15 8 C -0.18 -7.93 5.84 -20.34 -0.12 -8.04 15 9 C 0.39 14.62 11.43 70.12 0.80 15.42 15 10 O -0.52 -23.70 17.13 -3.00 -0.05 -23.75 15 11 C -0.14 -7.69 8.20 23.03 0.19 -7.51 15 12 C 0.10 5.40 5.58 -21.15 -0.12 5.29 15 13 C -0.49 -26.80 8.81 23.36 0.21 -26.59 15 14 H 0.08 4.11 7.74 -2.91 -0.02 4.08 15 15 C 0.03 1.81 5.12 85.24 0.44 2.25 15 16 N -0.82 -44.50 10.99 21.82 0.24 -44.26 15 17 Si 0.98 39.53 29.59 68.60 2.03 41.56 15 18 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 19 H -0.26 -9.97 7.11 99.48 0.71 -9.27 15 20 H -0.26 -10.31 7.11 99.48 0.71 -9.61 15 21 H 0.08 1.56 8.14 -2.39 -0.02 1.54 15 22 H 0.08 1.46 8.11 -2.38 -0.02 1.44 15 23 H 0.07 1.52 7.55 -2.39 -0.02 1.51 15 24 H 0.19 4.51 8.06 -2.91 -0.02 4.49 15 25 H 0.15 4.27 7.60 -2.91 -0.02 4.25 15 26 H 0.16 3.64 8.06 -2.91 -0.02 3.62 15 27 H 0.11 6.27 5.75 -2.91 -0.02 6.25 15 28 H 0.29 14.42 8.30 -92.71 -0.77 13.65 15 Total: -1.00 -67.79 264.75 5.08 -62.71 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 1.19 Total: 12.64 kcal Atomic # 6 Polarization: -51.53 SS G_CDS: 2.97 Total: -48.56 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.24 Total: -44.26 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.05 Total: -23.75 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -1.29 Total: -0.33 kcal Total: -67.79 5.08 -62.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340945.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.185 kcal (2) G-P(sol) polarization free energy of solvation -67.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds