Wall clock time and date at job start Mon Mar 30 2020 05:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37816 * 119.63815 * 2 1 4 4 C 1.38008 * 120.53605 * 180.02562 * 3 2 1 5 5 C 1.39544 * 119.98238 * 0.02562 * 4 3 2 6 6 C 1.46737 * 120.03118 * 179.97438 * 5 4 3 7 7 O 1.21318 * 119.99714 * 180.02562 * 6 5 4 8 8 C 1.41469 * 119.93480 * 0.02562 * 5 4 3 9 9 S 1.75751 * 130.28550 * 180.28980 * 8 5 4 10 10 C 1.69986 * 93.22668 * 180.02562 * 9 8 5 11 11 C 1.36383 * 111.96125 * 359.64373 * 10 9 8 12 12 C 1.40777 * 123.29207 * 180.29041 * 11 10 9 13 13 H 1.07997 * 119.99716 * 150.62908 * 12 11 10 14 14 C 1.39784 * 119.99908 * 330.62171 * 12 11 10 15 15 N 1.31025 * 119.99926 * 351.31437 * 14 12 11 16 16 Si 1.86801 * 119.99888 * 171.31134 * 14 12 11 17 17 H 1.48501 * 109.46792 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47057 * 120.00227 * 16 14 12 19 19 H 1.48494 * 109.46985 * 240.00398 * 16 14 12 20 20 C 1.39328 * 119.49237 * 359.97438 * 8 5 4 21 21 H 1.09004 * 109.47077 * 263.60260 * 1 2 3 22 22 H 1.09005 * 109.47212 * 23.60343 * 1 2 3 23 23 H 1.08999 * 109.47418 * 143.60817 * 1 2 3 24 24 H 1.08008 * 119.73299 * 0.02562 * 3 2 1 25 25 H 1.08005 * 120.00776 * 179.97438 * 4 3 2 26 26 H 1.07994 * 120.00190 * 0.02562 * 6 5 4 27 27 H 1.08000 * 124.02075 * 179.91464 * 10 9 8 28 28 H 0.97001 * 120.00023 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.1979 0.0000 4 6 3.5684 1.2195 -0.0005 5 6 4.2846 0.0219 -0.0016 6 6 5.7518 0.0436 -0.0027 7 8 6.3738 -0.9980 -0.0042 8 6 3.5947 -1.2132 -0.0027 9 16 4.2111 -2.8591 0.0026 10 6 2.6553 -3.5439 -0.0040 11 6 1.6789 -2.5917 -0.0021 12 6 0.3041 -2.8946 -0.0007 13 1 -0.3980 -2.2151 0.4594 14 6 -0.1522 -4.0748 -0.5948 15 7 0.6692 -4.8138 -1.2990 16 14 -1.9329 -4.5984 -0.3845 17 1 -2.6478 -3.5985 0.4488 18 1 -2.5832 -4.6878 -1.7166 19 1 -1.9835 -5.9249 0.2810 20 6 2.2015 -1.2207 -0.0022 21 1 -0.3633 -0.1145 1.0213 22 1 -0.3634 0.9417 -0.4115 23 1 -0.3634 -0.8272 -0.6097 24 1 1.6382 2.1272 0.0004 25 1 4.0938 2.1631 -0.0009 26 1 6.2779 0.9867 -0.0023 27 1 2.4628 -4.6066 -0.0047 28 1 0.3527 -5.6330 -1.7110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396340973.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:11 Heat of formation + Delta-G solvation = -5.340079 kcal Electronic energy + Delta-G solvation = -14989.289201 eV Core-core repulsion = 12482.171700 eV Total energy + Delta-G solvation = -2507.117501 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.22210 -37.87502 -34.93906 -32.35445 -32.20798 -28.42838 -27.50918 -25.45860 -23.05374 -22.30120 -20.27594 -19.59092 -16.84684 -16.37725 -15.74212 -15.25875 -14.58815 -14.09403 -13.92791 -13.90729 -13.28699 -13.08531 -12.82178 -11.91043 -11.78676 -11.49845 -11.37828 -11.19717 -11.02415 -10.75066 -10.39858 -10.15293 -9.84163 -9.53247 -9.22713 -8.89953 -8.35239 -7.43493 -6.73069 -6.63073 -4.32294 1.13720 1.91772 2.82437 2.86641 2.99749 3.07876 3.11346 3.76182 3.86463 3.98450 4.43780 4.71568 5.20279 5.29209 5.48993 5.61574 5.83886 6.00785 6.11106 6.28476 6.32862 6.63278 6.71894 6.80578 6.93731 7.15983 7.17599 7.48511 7.70895 7.90542 7.94565 8.44716 8.77048 8.86670 10.30305 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.028980 B = 0.008739 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.954376 B = 3203.396222 C = 4095.936810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.002 3.998 3 C -0.175 4.175 4 C -0.059 4.059 5 C -0.193 4.193 6 C 0.372 3.628 7 O -0.462 6.462 8 C -0.100 4.100 9 S 0.112 5.888 10 C -0.366 4.366 11 C 0.084 3.916 12 C -0.444 4.444 13 H 0.086 0.914 14 C 0.069 3.931 15 N -0.802 5.802 16 Si 0.909 3.091 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.274 1.274 20 C -0.081 4.081 21 H 0.069 0.931 22 H 0.052 0.948 23 H 0.099 0.901 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.093 0.907 27 H 0.155 0.845 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.926 8.965 1.593 9.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.000 4.000 3 C -0.197 4.197 4 C -0.079 4.079 5 C -0.200 4.200 6 C 0.232 3.768 7 O -0.338 6.338 8 C -0.218 4.218 9 S 0.379 5.621 10 C -0.502 4.502 11 C 0.076 3.924 12 C -0.477 4.477 13 H 0.104 0.896 14 C -0.147 4.147 15 N -0.429 5.429 16 Si 0.734 3.266 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.200 1.200 20 C -0.091 4.091 21 H 0.088 0.912 22 H 0.071 0.929 23 H 0.117 0.883 24 H 0.137 0.863 25 H 0.141 0.859 26 H 0.109 0.891 27 H 0.173 0.827 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.638 7.383 1.456 7.974 hybrid contribution -2.422 0.335 -0.099 2.447 sum 0.216 7.718 1.356 7.839 Atomic orbital electron populations 1.21183 0.91440 1.02925 1.02840 1.19945 0.95952 0.91273 0.92833 1.20557 0.93979 0.96886 1.08250 1.20967 0.94127 0.95903 0.96870 1.20052 0.95322 0.92019 1.12652 1.23818 0.88582 0.92999 0.71393 1.90508 1.70035 1.37527 1.35693 1.22981 0.96812 0.97928 1.04069 1.82499 1.09524 0.93286 1.76808 1.24563 0.93901 1.03463 1.28240 1.17271 0.94503 0.86160 0.94499 1.19193 0.91781 1.04306 1.32401 0.89647 1.25806 0.99619 0.95911 0.93390 1.69875 1.36470 1.12224 1.24287 0.86248 0.82245 0.79350 0.78798 1.18493 1.20109 1.19954 1.19670 0.91387 0.94900 1.03159 0.91237 0.92905 0.88279 0.86324 0.85897 0.89062 0.82743 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.50 36.00 0.31 -1.93 15 2 C 0.00 0.04 5.93 -103.95 -0.62 -0.57 15 3 C -0.17 -2.88 9.60 -39.82 -0.38 -3.26 15 4 C -0.06 -0.91 9.77 -39.18 -0.38 -1.29 15 5 C -0.19 -3.61 5.90 -104.75 -0.62 -4.23 15 6 C 0.37 6.13 11.43 34.16 0.39 6.52 15 7 O -0.46 -9.32 15.78 5.52 0.09 -9.23 15 8 C -0.10 -2.30 6.31 -37.95 -0.24 -2.54 15 9 S 0.11 2.68 21.06 -107.50 -2.26 0.42 15 10 C -0.37 -9.73 9.46 30.06 0.28 -9.44 15 11 C 0.08 2.21 5.62 -106.18 -0.60 1.61 15 12 C -0.44 -11.34 7.46 -38.04 -0.28 -11.62 15 13 H 0.09 2.02 5.47 -52.49 -0.29 1.74 15 14 C 0.07 1.71 5.36 -17.32 -0.09 1.62 15 15 N -0.80 -21.12 11.10 55.54 0.62 -20.51 15 16 Si 0.91 18.61 29.57 -169.99 -5.03 13.59 15 17 H -0.26 -5.18 7.11 56.52 0.40 -4.78 15 18 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 20 C -0.08 -1.92 5.98 -105.23 -0.63 -2.55 15 21 H 0.07 1.16 7.99 -51.93 -0.42 0.74 15 22 H 0.05 0.75 8.02 -51.93 -0.42 0.34 15 23 H 0.10 1.95 5.62 -51.93 -0.29 1.66 15 24 H 0.12 1.56 8.04 -52.48 -0.42 1.14 15 25 H 0.12 1.36 8.06 -52.48 -0.42 0.94 15 26 H 0.09 1.03 8.06 -52.49 -0.42 0.61 15 27 H 0.16 4.33 6.67 -52.49 -0.35 3.98 15 28 H 0.28 6.68 8.30 -40.82 -0.34 6.34 15 LS Contribution 256.37 15.07 3.86 3.86 Total: -1.00 -29.50 256.37 -7.75 -37.25 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -2.16 Total: 2.31 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: -2.86 Total: -27.69 kcal Atomic # 7 Polarization: -21.12 SS G_CDS: 0.62 Total: -20.51 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.59 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -2.26 Total: 0.42 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.50 -7.75 -37.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340973.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.910 kcal (2) G-P(sol) polarization free energy of solvation -29.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds