Wall clock time and date at job start Mon Mar 30 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37816 * 119.63815 * 2 1 4 4 C 1.38008 * 120.53605 * 180.02562 * 3 2 1 5 5 C 1.39544 * 119.98238 * 0.02562 * 4 3 2 6 6 C 1.46737 * 120.03118 * 179.97438 * 5 4 3 7 7 O 1.21318 * 119.99714 * 180.02562 * 6 5 4 8 8 C 1.41469 * 119.93480 * 0.02562 * 5 4 3 9 9 S 1.75751 * 130.28550 * 180.28980 * 8 5 4 10 10 C 1.69986 * 93.22668 * 180.02562 * 9 8 5 11 11 C 1.36383 * 111.96125 * 359.64373 * 10 9 8 12 12 C 1.40777 * 123.29207 * 180.29041 * 11 10 9 13 13 H 1.07997 * 119.99716 * 150.62908 * 12 11 10 14 14 C 1.39784 * 119.99908 * 330.62171 * 12 11 10 15 15 N 1.31025 * 119.99926 * 351.31437 * 14 12 11 16 16 Si 1.86801 * 119.99888 * 171.31134 * 14 12 11 17 17 H 1.48501 * 109.46792 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47057 * 120.00227 * 16 14 12 19 19 H 1.48494 * 109.46985 * 240.00398 * 16 14 12 20 20 C 1.39328 * 119.49237 * 359.97438 * 8 5 4 21 21 H 1.09004 * 109.47077 * 263.60260 * 1 2 3 22 22 H 1.09005 * 109.47212 * 23.60343 * 1 2 3 23 23 H 1.08999 * 109.47418 * 143.60817 * 1 2 3 24 24 H 1.08008 * 119.73299 * 0.02562 * 3 2 1 25 25 H 1.08005 * 120.00776 * 179.97438 * 4 3 2 26 26 H 1.07994 * 120.00190 * 0.02562 * 6 5 4 27 27 H 1.08000 * 124.02075 * 179.91464 * 10 9 8 28 28 H 0.97001 * 120.00023 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.1979 0.0000 4 6 3.5684 1.2195 -0.0005 5 6 4.2846 0.0219 -0.0016 6 6 5.7518 0.0436 -0.0027 7 8 6.3738 -0.9980 -0.0042 8 6 3.5947 -1.2132 -0.0027 9 16 4.2111 -2.8591 0.0026 10 6 2.6553 -3.5439 -0.0040 11 6 1.6789 -2.5917 -0.0021 12 6 0.3041 -2.8946 -0.0007 13 1 -0.3980 -2.2151 0.4594 14 6 -0.1522 -4.0748 -0.5948 15 7 0.6692 -4.8138 -1.2990 16 14 -1.9329 -4.5984 -0.3845 17 1 -2.6478 -3.5985 0.4488 18 1 -2.5832 -4.6878 -1.7166 19 1 -1.9835 -5.9249 0.2810 20 6 2.2015 -1.2207 -0.0022 21 1 -0.3633 -0.1145 1.0213 22 1 -0.3634 0.9417 -0.4115 23 1 -0.3634 -0.8272 -0.6097 24 1 1.6382 2.1272 0.0004 25 1 4.0938 2.1631 -0.0009 26 1 6.2779 0.9867 -0.0023 27 1 2.4628 -4.6066 -0.0047 28 1 0.3527 -5.6330 -1.7110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396340973.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:10 Heat of formation + Delta-G solvation = -22.968565 kcal Electronic energy + Delta-G solvation = -14990.053629 eV Core-core repulsion = 12482.171700 eV Total energy + Delta-G solvation = -2507.881929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.69000 -39.34461 -36.67538 -34.13533 -33.65396 -30.08497 -29.03372 -27.25278 -24.56499 -23.76302 -21.80910 -21.26677 -18.58832 -18.04978 -17.16335 -16.94611 -16.11873 -15.58868 -15.46172 -15.36998 -14.73240 -14.57523 -14.50464 -13.48959 -13.45973 -13.09837 -12.98379 -12.81717 -12.61327 -12.35494 -12.00065 -11.78748 -11.45116 -11.23139 -11.02128 -10.44065 -9.92094 -9.13279 -8.59371 -8.44487 -6.28984 -0.26458 0.35171 1.17058 1.24839 1.37094 1.51953 1.54098 1.98670 2.07777 2.23093 2.88575 3.33845 3.52614 4.04235 4.10426 4.30397 4.46886 4.69009 4.73847 4.91719 4.96974 5.08125 5.25054 5.32415 5.37104 5.45015 5.67547 5.70589 5.98216 6.16438 6.54058 6.66387 6.85230 6.95730 8.44117 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.028980 B = 0.008739 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.954376 B = 3203.396222 C = 4095.936810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.016 4.016 3 C -0.159 4.159 4 C -0.029 4.029 5 C -0.211 4.211 6 C 0.379 3.621 7 O -0.507 6.507 8 C -0.119 4.119 9 S 0.079 5.921 10 C -0.406 4.406 11 C 0.065 3.935 12 C -0.466 4.466 13 H 0.099 0.901 14 C 0.020 3.980 15 N -0.843 5.843 16 Si 0.985 3.015 17 H -0.246 1.246 18 H -0.269 1.269 19 H -0.275 1.275 20 C -0.123 4.123 21 H 0.074 0.926 22 H 0.092 0.908 23 H 0.069 0.931 24 H 0.169 0.831 25 H 0.190 0.810 26 H 0.169 0.831 27 H 0.122 0.878 28 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.266 13.636 1.859 13.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.018 4.018 3 C -0.180 4.180 4 C -0.048 4.048 5 C -0.219 4.219 6 C 0.242 3.758 7 O -0.384 6.384 8 C -0.236 4.236 9 S 0.344 5.656 10 C -0.541 4.541 11 C 0.056 3.944 12 C -0.498 4.498 13 H 0.117 0.883 14 C -0.192 4.192 15 N -0.471 5.471 16 Si 0.805 3.195 17 H -0.169 1.169 18 H -0.194 1.194 19 H -0.200 1.200 20 C -0.132 4.132 21 H 0.092 0.908 22 H 0.111 0.889 23 H 0.088 0.912 24 H 0.186 0.814 25 H 0.207 0.793 26 H 0.184 0.816 27 H 0.140 0.860 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.980 12.091 1.727 12.373 hybrid contribution -2.162 -0.856 -0.181 2.333 sum -0.183 11.234 1.546 11.341 Atomic orbital electron populations 1.21140 0.90222 1.03835 1.02834 1.20374 0.97252 0.91150 0.92999 1.21187 0.94828 0.97125 1.04888 1.21712 0.93940 0.96959 0.92190 1.20755 0.97402 0.91432 1.12336 1.24755 0.87440 0.94703 0.68943 1.90521 1.70440 1.39889 1.37538 1.23295 0.97008 0.98156 1.05127 1.82233 1.08446 0.95809 1.79124 1.24332 0.95835 1.02272 1.31666 1.17793 0.94977 0.88067 0.93538 1.19591 0.92067 1.05250 1.32916 0.88334 1.26831 1.04321 0.95479 0.92527 1.70020 1.38834 1.12822 1.25409 0.85111 0.76428 0.78875 0.79042 1.16882 1.19379 1.19997 1.19833 0.92258 0.95115 1.06037 0.90772 0.88892 0.91249 0.81382 0.79311 0.81554 0.85983 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 8.50 71.23 0.61 -3.47 15 2 C -0.02 -0.59 5.93 -19.43 -0.12 -0.71 15 3 C -0.16 -4.30 9.60 22.12 0.21 -4.09 15 4 C -0.03 -0.70 9.77 22.53 0.22 -0.48 15 5 C -0.21 -7.25 5.90 -19.95 -0.12 -7.36 15 6 C 0.38 11.04 11.43 70.04 0.80 11.84 15 7 O -0.51 -19.92 15.78 -3.15 -0.05 -19.97 15 8 C -0.12 -5.51 6.31 23.33 0.15 -5.37 15 9 S 0.08 4.06 21.06 -56.49 -1.19 2.87 15 10 C -0.41 -23.60 9.46 67.39 0.64 -22.96 15 11 C 0.07 3.64 5.62 -20.87 -0.12 3.52 15 12 C -0.47 -24.92 7.46 23.27 0.17 -24.74 15 13 H 0.10 4.80 5.47 -2.91 -0.02 4.79 15 14 C 0.02 1.06 5.36 85.19 0.46 1.52 15 15 N -0.84 -47.48 11.10 21.81 0.24 -47.24 15 16 Si 0.98 39.21 29.57 68.60 2.03 41.24 15 17 H -0.25 -9.07 7.11 99.48 0.71 -8.37 15 18 H -0.27 -10.32 7.11 99.48 0.71 -9.62 15 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 15 20 C -0.12 -5.94 5.98 -20.26 -0.12 -6.06 15 21 H 0.07 2.33 7.99 -2.38 -0.02 2.31 15 22 H 0.09 2.25 8.02 -2.38 -0.02 2.23 15 23 H 0.07 2.71 5.62 -2.39 -0.01 2.70 15 24 H 0.17 2.98 8.04 -2.91 -0.02 2.95 15 25 H 0.19 2.26 8.06 -2.91 -0.02 2.23 15 26 H 0.17 2.48 8.06 -2.91 -0.02 2.46 15 27 H 0.12 7.66 6.67 -2.91 -0.02 7.64 15 28 H 0.28 14.42 8.30 -92.71 -0.77 13.66 15 Total: -1.00 -73.62 256.37 5.01 -68.62 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.19 Total: 12.83 kcal Atomic # 6 Polarization: -61.13 SS G_CDS: 2.78 Total: -58.35 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.24 Total: -47.24 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.05 Total: -19.97 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.19 Total: 2.87 kcal Total: -73.62 5.01 -68.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340973.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.649 kcal (2) G-P(sol) polarization free energy of solvation -73.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds