Wall clock time and date at job start Mon Mar 30 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36111 * 119.89588 * 2 1 4 4 C 1.39939 * 120.83097 * 180.02562 * 3 2 1 5 5 S 1.76055 * 130.05305 * 179.97438 * 4 3 2 6 6 C 1.75433 * 91.83539 * 180.02562 * 5 4 3 7 7 C 1.39922 * 124.78083 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99414 * 190.82473 * 7 6 5 9 9 C 1.40185 * 120.00589 * 10.82644 * 7 6 5 10 10 N 1.30745 * 120.00445 * 174.63901 * 9 7 6 11 11 Si 1.86800 * 119.99808 * 354.64177 * 9 7 6 12 12 H 1.48499 * 109.47377 * 179.97438 * 11 9 7 13 13 H 1.48509 * 109.46840 * 299.99866 * 11 9 7 14 14 H 1.48497 * 109.47460 * 59.99803 * 11 9 7 15 15 C 1.36854 * 110.42715 * 0.26710 * 6 5 4 16 16 C 1.39935 * 115.01915 * 359.52202 * 15 6 5 17 17 C 1.41430 * 128.44446 * 180.17442 * 16 15 6 18 18 C 1.38863 * 120.06703 * 180.33351 * 17 16 15 19 19 C 1.46892 * 119.95073 * 179.97438 * 18 17 16 20 20 O 1.21298 * 119.99744 * 0.02562 * 19 18 17 21 21 H 1.09003 * 109.46726 * 270.02722 * 1 2 3 22 22 H 1.09001 * 109.46859 * 30.01673 * 1 2 3 23 23 H 1.08997 * 109.47522 * 150.02442 * 1 2 3 24 24 H 1.08003 * 119.58436 * 0.02562 * 3 2 1 25 25 H 0.97006 * 119.99916 * 0.05435 * 10 9 7 26 26 H 1.08005 * 122.48768 * 179.71064 * 15 6 5 27 27 H 1.07999 * 119.96629 * 0.35301 * 17 16 15 28 28 H 1.07999 * 120.00371 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1854 1.1800 0.0000 4 6 3.5846 1.2028 -0.0005 5 16 4.6953 2.5687 -0.0013 6 6 6.0912 1.5061 -0.0023 7 6 7.4224 1.9370 -0.0028 8 1 8.2189 1.2293 -0.1791 9 6 7.7223 3.2872 0.2257 10 7 8.9675 3.6718 0.3296 11 14 6.3426 4.5369 0.3817 12 1 6.9197 5.8843 0.6196 13 1 5.5457 4.5533 -0.8714 14 1 5.4656 4.1664 1.5212 15 6 5.6944 0.1963 -0.0081 16 6 4.3092 -0.0024 -0.0012 17 6 3.5961 -1.2238 -0.0012 18 6 2.2075 -1.2186 -0.0006 19 6 1.4694 -2.4887 -0.0011 20 8 2.0729 -3.5408 -0.0016 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8899 -0.5141 23 1 -0.3634 -0.8902 -0.5134 24 1 1.6369 2.1104 0.0004 25 1 9.6840 3.0230 0.2479 26 1 6.3980 -0.6230 -0.0143 27 1 4.1321 -2.1614 -0.0013 28 1 0.3894 -2.4857 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396342085.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:38 Heat of formation + Delta-G solvation = -26.776200 kcal Electronic energy + Delta-G solvation = -14579.319990 eV Core-core repulsion = 12071.272949 eV Total energy + Delta-G solvation = -2508.047041 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.35632 -37.76829 -35.35452 -33.82920 -30.90212 -30.39873 -27.51864 -25.11558 -23.63564 -21.16497 -20.93502 -19.10761 -18.73166 -16.59501 -15.98421 -15.57327 -14.74500 -14.41683 -14.08602 -13.76224 -13.37877 -13.14576 -12.90781 -12.68470 -12.60657 -12.00019 -11.79006 -11.51102 -11.44660 -10.78572 -10.34273 -10.19961 -9.95532 -9.73036 -9.39867 -8.93184 -8.71273 -7.86561 -7.69440 -6.78891 -4.83829 1.20726 1.79426 2.27865 2.77791 2.88991 2.95396 3.00396 3.40513 3.43643 3.70124 4.43762 4.61553 4.80662 5.28513 5.35989 5.60455 5.74099 5.83953 6.04983 6.11294 6.21267 6.42405 6.79116 6.81646 6.97845 6.98401 7.10159 7.18780 7.38063 7.64983 7.76188 7.79260 7.93550 8.20794 9.50560 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.041491 B = 0.006926 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.677688 B = 4041.765444 C = 4692.809969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.120 4.120 3 C -0.063 4.063 4 C -0.195 4.195 5 S -0.022 6.022 6 C 0.063 3.937 7 C -0.433 4.433 8 H 0.098 0.902 9 C 0.048 3.952 10 N -0.783 5.783 11 Si 0.917 3.083 12 H -0.223 1.223 13 H -0.201 1.201 14 H -0.198 1.198 15 C -0.359 4.359 16 C 0.010 3.990 17 C -0.073 4.073 18 C -0.181 4.181 19 C 0.383 3.617 20 O -0.478 6.478 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.110 0.890 25 H 0.294 0.706 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.488 0.230 -0.118 10.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.307 4.307 5 S 0.234 5.766 6 C -0.054 4.054 7 C -0.466 4.466 8 H 0.116 0.884 9 C -0.177 4.177 10 N -0.404 5.404 11 Si 0.739 3.261 12 H -0.146 1.146 13 H -0.127 1.127 14 H -0.123 1.123 15 C -0.383 4.383 16 C 0.003 3.997 17 C -0.093 4.093 18 C -0.184 4.184 19 C 0.244 3.756 20 O -0.354 6.354 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.128 0.872 25 H 0.106 0.894 26 H 0.132 0.868 27 H 0.137 0.863 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.457 2.787 0.141 10.823 hybrid contribution 0.796 -2.997 -0.285 3.114 sum -9.660 -0.210 -0.145 9.664 Atomic orbital electron populations 1.20671 0.91863 1.01991 1.01553 1.19056 0.94683 0.91852 1.06713 1.19739 0.91171 0.96862 1.00805 1.23049 0.96852 0.97202 1.13640 1.84597 0.99888 1.09832 1.82251 1.21231 0.94632 0.93886 0.95682 1.20442 0.91980 0.96546 1.37672 0.88371 1.27401 1.01205 0.98434 0.90625 1.70522 1.00616 1.40317 1.28926 0.84568 0.76611 0.79989 0.84886 1.14571 1.12730 1.12348 1.19556 0.92556 0.95085 1.31116 1.18030 0.93317 0.91617 0.96781 1.21186 0.92470 0.96625 0.99024 1.20108 0.94243 0.94523 1.09524 1.24016 0.94673 0.87110 0.69809 1.90476 1.73897 1.34738 1.36259 0.91947 0.92016 0.92167 0.87245 0.89395 0.86815 0.86313 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 9.50 36.00 0.34 -0.88 15 2 C -0.12 -2.01 5.88 -104.51 -0.62 -2.62 15 3 C -0.06 -1.18 9.61 -39.71 -0.38 -1.56 15 4 C -0.19 -4.28 6.49 -38.04 -0.25 -4.53 15 5 S -0.02 -0.49 15.29 -107.50 -1.64 -2.13 15 6 C 0.06 1.56 5.94 -39.45 -0.23 1.32 15 7 C -0.43 -10.82 9.70 -38.22 -0.37 -11.19 15 8 H 0.10 2.50 8.06 -52.49 -0.42 2.08 15 9 C 0.05 1.15 5.52 -17.28 -0.10 1.06 15 10 N -0.78 -18.97 13.65 55.56 0.76 -18.21 15 11 Si 0.92 18.35 24.49 -169.99 -4.16 14.18 15 12 H -0.22 -4.19 7.11 56.52 0.40 -3.79 15 13 H -0.20 -3.83 6.31 60.24 0.38 -3.45 15 14 H -0.20 -3.84 6.34 59.42 0.38 -3.46 15 15 C -0.36 -8.81 10.14 -39.45 -0.40 -9.21 15 16 C 0.01 0.23 5.85 -107.14 -0.63 -0.40 15 17 C -0.07 -1.53 9.64 -38.14 -0.37 -1.89 15 18 C -0.18 -3.28 5.85 -105.29 -0.62 -3.89 15 19 C 0.38 5.98 10.87 34.23 0.37 6.35 15 20 O -0.48 -9.02 17.12 5.54 0.09 -8.92 15 21 H 0.06 0.66 8.14 -51.93 -0.42 0.23 15 22 H 0.06 0.66 8.08 -51.93 -0.42 0.24 15 23 H 0.06 0.60 6.30 -51.93 -0.33 0.27 15 24 H 0.11 1.77 8.06 -52.48 -0.42 1.34 15 25 H 0.29 6.86 8.72 -40.82 -0.36 6.51 15 26 H 0.11 2.73 8.06 -52.48 -0.42 2.30 15 27 H 0.12 2.45 7.60 -52.49 -0.40 2.05 15 28 H 0.09 1.05 6.33 -52.49 -0.33 0.72 15 LS Contribution 254.64 15.07 3.84 3.84 Total: -1.00 -26.92 254.64 -6.72 -33.64 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -2.37 Total: 5.04 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -3.24 Total: -27.43 kcal Atomic # 7 Polarization: -18.97 SS G_CDS: 0.76 Total: -18.21 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -4.16 Total: 14.18 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -1.64 Total: -2.13 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.92 -6.72 -33.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396342085.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.865 kcal (2) G-P(sol) polarization free energy of solvation -26.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds