Wall clock time and date at job start Mon Mar 30 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36111 * 119.89588 * 2 1 4 4 C 1.39939 * 120.83097 * 180.02562 * 3 2 1 5 5 S 1.76055 * 130.05305 * 179.97438 * 4 3 2 6 6 C 1.75433 * 91.83539 * 180.02562 * 5 4 3 7 7 C 1.39922 * 124.78083 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99414 * 190.82473 * 7 6 5 9 9 C 1.40185 * 120.00589 * 10.82644 * 7 6 5 10 10 N 1.30745 * 120.00445 * 174.63901 * 9 7 6 11 11 Si 1.86800 * 119.99808 * 354.64177 * 9 7 6 12 12 H 1.48499 * 109.47377 * 179.97438 * 11 9 7 13 13 H 1.48509 * 109.46840 * 299.99866 * 11 9 7 14 14 H 1.48497 * 109.47460 * 59.99803 * 11 9 7 15 15 C 1.36854 * 110.42715 * 0.26710 * 6 5 4 16 16 C 1.39935 * 115.01915 * 359.52202 * 15 6 5 17 17 C 1.41430 * 128.44446 * 180.17442 * 16 15 6 18 18 C 1.38863 * 120.06703 * 180.33351 * 17 16 15 19 19 C 1.46892 * 119.95073 * 179.97438 * 18 17 16 20 20 O 1.21298 * 119.99744 * 0.02562 * 19 18 17 21 21 H 1.09003 * 109.46726 * 270.02722 * 1 2 3 22 22 H 1.09001 * 109.46859 * 30.01673 * 1 2 3 23 23 H 1.08997 * 109.47522 * 150.02442 * 1 2 3 24 24 H 1.08003 * 119.58436 * 0.02562 * 3 2 1 25 25 H 0.97006 * 119.99916 * 0.05435 * 10 9 7 26 26 H 1.08005 * 122.48768 * 179.71064 * 15 6 5 27 27 H 1.07999 * 119.96629 * 0.35301 * 17 16 15 28 28 H 1.07999 * 120.00371 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1854 1.1800 0.0000 4 6 3.5846 1.2028 -0.0005 5 16 4.6953 2.5687 -0.0013 6 6 6.0912 1.5061 -0.0023 7 6 7.4224 1.9370 -0.0028 8 1 8.2189 1.2293 -0.1791 9 6 7.7223 3.2872 0.2257 10 7 8.9675 3.6718 0.3296 11 14 6.3426 4.5369 0.3817 12 1 6.9197 5.8843 0.6196 13 1 5.5457 4.5533 -0.8714 14 1 5.4656 4.1664 1.5212 15 6 5.6944 0.1963 -0.0081 16 6 4.3092 -0.0024 -0.0012 17 6 3.5961 -1.2238 -0.0012 18 6 2.2075 -1.2186 -0.0006 19 6 1.4694 -2.4887 -0.0011 20 8 2.0729 -3.5408 -0.0016 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8899 -0.5141 23 1 -0.3634 -0.8902 -0.5134 24 1 1.6369 2.1104 0.0004 25 1 9.6840 3.0230 0.2479 26 1 6.3980 -0.6230 -0.0143 27 1 4.1321 -2.1614 -0.0013 28 1 0.3894 -2.4857 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396342085.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:38 Heat of formation + Delta-G solvation = -42.376328 kcal Electronic energy + Delta-G solvation = -14579.996462 eV Core-core repulsion = 12071.272949 eV Total energy + Delta-G solvation = -2508.723513 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.82367 -39.27059 -37.05492 -35.49472 -32.44290 -31.95764 -28.99721 -26.61076 -25.15837 -22.76076 -22.45170 -20.87930 -20.37585 -18.16102 -17.46599 -17.15175 -16.29690 -15.96371 -15.46254 -15.33947 -15.02981 -14.59341 -14.42781 -14.24048 -13.95032 -13.62616 -13.07179 -12.99049 -12.78760 -12.44363 -11.97892 -11.88444 -11.65342 -11.37857 -10.80467 -10.51445 -10.32003 -9.70989 -9.37026 -8.47062 -6.72491 -0.26492 0.13303 0.64267 1.07007 1.22172 1.34371 1.45776 1.78972 1.82586 2.10169 2.74091 3.06526 3.40235 3.91105 4.08718 4.39632 4.47712 4.51078 4.72789 4.89271 5.02894 5.09993 5.13186 5.17806 5.24062 5.38755 5.41231 5.62502 5.63579 5.87177 6.02902 6.17417 6.40729 6.52749 7.66619 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.041491 B = 0.006926 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.677688 B = 4041.765444 C = 4692.809969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.084 4.084 3 C -0.078 4.078 4 C -0.203 4.203 5 S 0.011 5.989 6 C 0.040 3.960 7 C -0.474 4.474 8 H 0.068 0.932 9 C 0.021 3.979 10 N -0.806 5.806 11 Si 0.936 3.064 12 H -0.199 1.199 13 H -0.184 1.184 14 H -0.187 1.187 15 C -0.383 4.383 16 C -0.025 4.025 17 C -0.094 4.094 18 C -0.187 4.187 19 C 0.395 3.605 20 O -0.512 6.512 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.144 0.856 25 H 0.286 0.714 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.906 0.800 -0.038 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.087 4.087 3 C -0.100 4.100 4 C -0.316 4.316 5 S 0.268 5.732 6 C -0.077 4.077 7 C -0.508 4.508 8 H 0.086 0.914 9 C -0.198 4.198 10 N -0.427 5.427 11 Si 0.752 3.248 12 H -0.121 1.121 13 H -0.110 1.110 14 H -0.112 1.112 15 C -0.407 4.407 16 C -0.032 4.032 17 C -0.114 4.114 18 C -0.190 4.190 19 C 0.257 3.743 20 O -0.389 6.389 21 H 0.106 0.894 22 H 0.100 0.900 23 H 0.106 0.894 24 H 0.161 0.839 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.856 3.341 0.217 16.206 hybrid contribution 2.141 -3.434 -0.328 4.060 sum -13.715 -0.093 -0.111 13.715 Atomic orbital electron populations 1.20884 0.87075 1.04517 1.03877 1.19767 0.97813 0.90163 1.00968 1.20247 0.89698 0.99316 1.00757 1.23501 0.98595 0.96563 1.12912 1.84243 0.98042 1.08879 1.82061 1.21323 0.95628 0.94789 0.95950 1.20360 0.91872 0.97152 1.41442 0.91427 1.28521 1.02555 0.99361 0.89393 1.70583 1.00869 1.40035 1.31185 0.84440 0.75005 0.79394 0.85943 1.12072 1.10966 1.11157 1.19712 0.93725 0.94977 1.32296 1.18141 0.92757 0.93326 0.98938 1.21291 0.94331 0.95472 1.00340 1.20682 0.93183 0.97180 1.07936 1.24728 0.96795 0.84935 0.67808 1.90496 1.75087 1.35729 1.37583 0.89437 0.90024 0.89353 0.83858 0.90230 0.88630 0.87527 0.82199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 9.50 71.23 0.68 -0.98 15 2 C -0.08 -2.35 5.88 -19.79 -0.12 -2.47 15 3 C -0.08 -2.56 9.61 22.19 0.21 -2.35 15 4 C -0.20 -8.63 6.49 23.27 0.15 -8.48 15 5 S 0.01 0.50 15.29 -56.49 -0.86 -0.37 15 6 C 0.04 2.09 5.94 22.35 0.13 2.23 15 7 C -0.47 -25.67 9.70 23.15 0.22 -25.45 15 8 H 0.07 3.88 8.06 -2.91 -0.02 3.85 15 9 C 0.02 1.06 5.52 85.33 0.47 1.53 15 10 N -0.81 -41.14 13.65 21.87 0.30 -40.85 15 11 Si 0.94 36.51 24.49 68.60 1.68 38.19 15 12 H -0.20 -7.01 7.11 99.48 0.71 -6.30 15 13 H -0.18 -6.64 6.31 97.11 0.61 -6.03 15 14 H -0.19 -6.91 6.34 97.64 0.62 -6.29 15 15 C -0.38 -20.03 10.14 22.36 0.23 -19.81 15 16 C -0.02 -1.16 5.85 -21.50 -0.13 -1.29 15 17 C -0.09 -3.94 9.64 23.21 0.22 -3.72 15 18 C -0.19 -6.11 5.85 -20.30 -0.12 -6.23 15 19 C 0.39 10.44 10.87 70.09 0.76 11.20 15 20 O -0.51 -17.95 17.12 -3.08 -0.05 -18.00 15 21 H 0.09 1.10 8.14 -2.39 -0.02 1.08 15 22 H 0.08 1.07 8.08 -2.39 -0.02 1.05 15 23 H 0.09 0.95 6.30 -2.39 -0.02 0.94 15 24 H 0.14 3.77 8.06 -2.91 -0.02 3.75 15 25 H 0.29 14.48 8.72 -92.70 -0.81 13.67 15 26 H 0.10 5.10 8.06 -2.91 -0.02 5.08 15 27 H 0.11 4.59 7.60 -2.91 -0.02 4.57 15 28 H 0.16 2.28 6.33 -2.91 -0.02 2.27 15 Total: -1.00 -63.95 254.64 4.75 -59.20 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.97 Total: 17.63 kcal Atomic # 6 Polarization: -58.52 SS G_CDS: 2.72 Total: -55.80 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.30 Total: -40.85 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.05 Total: -18.00 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 1.68 Total: 38.19 kcal Atomic # 16 Polarization: 0.50 SS G_CDS: -0.86 Total: -0.37 kcal Total: -63.95 4.75 -59.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396342085.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.827 kcal (2) G-P(sol) polarization free energy of solvation -63.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds