Wall clock time and date at job start Mon Mar 30 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32894 * 124.66636 * 2 1 4 4 C 1.39756 * 115.86608 * 179.97438 * 3 2 1 5 5 C 1.40005 * 112.65910 * 0.02562 * 4 3 2 6 6 C 1.39125 * 120.26131 * 180.02562 * 5 4 3 7 7 C 1.39766 * 121.32576 * 359.92806 * 6 5 4 8 8 C 1.46948 * 119.66443 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00629 * 0.05564 * 8 7 6 10 10 C 1.39448 * 120.66483 * 0.07201 * 7 6 5 11 11 C 1.39875 * 119.95675 * 359.96669 * 10 7 6 12 12 C 1.40703 * 120.28223 * 180.02562 * 11 10 7 13 13 H 1.08005 * 120.00390 * 154.19532 * 12 11 10 14 14 C 1.39987 * 119.99914 * 334.19882 * 12 11 10 15 15 N 1.30838 * 120.00132 * 343.29309 * 14 12 11 16 16 Si 1.86806 * 120.00076 * 163.29127 * 14 12 11 17 17 H 1.48498 * 109.46947 * 59.99901 * 16 14 12 18 18 H 1.48494 * 109.47171 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46938 * 300.00132 * 16 14 12 20 20 S 1.75507 * 124.66572 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.46358 * 90.00183 * 1 2 3 22 22 H 1.08994 * 109.47120 * 209.99955 * 1 2 3 23 23 H 1.08996 * 109.47230 * 330.00417 * 1 2 3 24 24 H 1.08000 * 122.06980 * 359.72736 * 3 2 1 25 25 H 1.08003 * 119.33466 * 179.97438 * 6 5 4 26 26 H 1.08009 * 119.99685 * 180.02562 * 8 7 6 27 27 H 1.07999 * 120.02034 * 179.97438 * 10 7 6 28 28 H 0.96993 * 119.99876 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2629 1.0930 0.0000 4 6 3.6440 0.8792 0.0006 5 6 3.9794 -0.4801 0.0005 6 6 5.3140 -0.8730 0.0015 7 6 6.3482 0.0672 0.0012 8 6 7.7453 -0.3885 0.0017 9 8 7.9963 -1.5751 0.0015 10 6 6.0677 1.4331 0.0013 11 6 4.7400 1.8735 0.0010 12 6 4.4491 3.2501 0.0006 13 1 3.5136 3.6043 -0.4067 14 6 5.3723 4.1607 0.5281 15 7 6.3372 3.7386 1.3044 16 14 5.2265 5.9787 0.1237 17 1 3.9127 6.4865 0.5940 18 1 6.3174 6.7253 0.8002 19 1 5.3338 6.1691 -1.3452 20 16 2.5053 -1.4435 0.0006 21 1 -0.3632 0.0000 -1.0278 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5137 24 1 1.8364 2.0852 -0.0044 25 1 5.5557 -1.9256 0.0018 26 1 8.5487 0.3334 0.0019 27 1 6.8749 2.1506 0.0015 28 1 6.9770 4.3695 1.6695 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396342669.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:22 Heat of formation + Delta-G solvation = -12.302680 kcal Electronic energy + Delta-G solvation = -14688.736367 eV Core-core repulsion = 12181.316945 eV Total energy + Delta-G solvation = -2507.419422 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.73522 -37.57256 -34.95715 -33.79013 -30.55463 -30.01218 -27.03752 -25.25238 -22.83269 -22.23621 -20.06089 -19.09059 -17.61427 -16.36502 -15.35024 -15.21621 -14.84746 -14.29221 -13.86715 -13.56339 -13.29595 -13.07712 -12.51755 -12.30674 -12.07479 -11.71830 -11.65404 -11.34735 -11.21934 -10.74976 -10.53812 -10.12046 -9.84173 -9.65346 -9.50521 -9.01652 -8.38995 -7.38646 -7.16490 -6.90523 -4.61369 1.29685 2.51376 2.52204 2.64516 2.87181 2.88693 2.93906 3.01466 3.63780 3.69218 4.30436 5.09611 5.27745 5.52953 5.74245 5.92244 6.02375 6.06599 6.19138 6.44372 6.47452 6.67128 6.73353 6.87215 7.01013 7.12607 7.47270 7.56709 7.60289 7.71211 8.11525 8.21960 8.38610 8.50554 9.73092 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.016314 B = 0.010029 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.859451 B = 2791.370309 C = 4421.883906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.235 4.235 3 C -0.067 4.067 4 C -0.164 4.164 5 C -0.084 4.084 6 C -0.169 4.169 7 C -0.139 4.139 8 C 0.388 3.612 9 O -0.487 6.487 10 C -0.136 4.136 11 C 0.138 3.862 12 C -0.425 4.425 13 H 0.088 0.912 14 C 0.072 3.928 15 N -0.770 5.770 16 Si 0.919 3.081 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.259 1.259 20 S 0.007 5.993 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.126 0.874 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.132 0.868 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.407 1.256 -1.487 3.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.350 4.350 3 C -0.096 4.096 4 C -0.171 4.171 5 C -0.199 4.199 6 C -0.194 4.194 7 C -0.143 4.143 8 C 0.250 3.750 9 O -0.363 6.363 10 C -0.159 4.159 11 C 0.133 3.867 12 C -0.452 4.452 13 H 0.106 0.894 14 C -0.150 4.150 15 N -0.393 5.393 16 Si 0.742 3.258 17 H -0.186 1.186 18 H -0.199 1.199 19 H -0.183 1.183 20 S 0.268 5.732 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.144 0.856 25 H 0.121 0.879 26 H 0.108 0.892 27 H 0.150 0.850 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.485 -0.803 -1.322 3.813 hybrid contribution 0.254 2.403 0.006 2.416 sum -3.230 1.600 -1.316 3.838 Atomic orbital electron populations 1.20111 0.89154 1.01812 1.01355 1.23503 0.98476 0.95147 1.17833 1.19616 0.92448 0.98008 0.99524 1.19227 0.92829 0.91814 1.13227 1.22087 0.95931 0.95481 1.06403 1.19666 0.89092 0.97796 1.12883 1.20234 0.93992 0.94697 1.05369 1.24099 0.91835 0.90069 0.69022 1.90420 1.87548 1.21521 1.36842 1.21345 0.97042 0.92532 1.04932 1.18328 0.89438 0.91469 0.87503 1.19623 1.03208 0.90787 1.31570 0.89422 1.26096 0.93778 1.02683 0.92458 1.69777 1.11447 1.38522 1.19558 0.86163 0.79411 0.79977 0.80273 1.18558 1.19861 1.18317 1.83504 0.97374 1.10193 1.82085 0.92146 0.92450 0.91587 0.85637 0.87868 0.89163 0.85040 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.34 36.01 0.37 -0.59 15 2 C -0.23 -4.53 6.44 -36.15 -0.23 -4.76 15 3 C -0.07 -1.42 9.58 -40.86 -0.39 -1.81 15 4 C -0.16 -3.93 6.02 -104.68 -0.63 -4.56 15 5 C -0.08 -1.98 6.46 -38.59 -0.25 -2.23 15 6 C -0.17 -3.96 9.57 -38.68 -0.37 -4.33 15 7 C -0.14 -3.13 5.84 -105.35 -0.62 -3.75 15 8 C 0.39 7.65 11.42 34.26 0.39 8.04 15 9 O -0.49 -10.68 17.09 5.55 0.09 -10.59 15 10 C -0.14 -3.19 8.37 -38.52 -0.32 -3.51 15 11 C 0.14 3.37 5.74 -104.36 -0.60 2.77 15 12 C -0.42 -9.94 8.80 -38.00 -0.33 -10.28 15 13 H 0.09 1.96 7.50 -52.48 -0.39 1.56 15 14 C 0.07 1.56 5.14 -17.32 -0.09 1.47 15 15 N -0.77 -17.26 10.97 55.55 0.61 -16.65 15 16 Si 0.92 16.27 29.59 -169.99 -5.03 11.24 15 17 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 18 H -0.27 -4.73 7.11 56.52 0.40 -4.33 15 19 H -0.26 -4.57 7.11 56.52 0.40 -4.17 15 20 S 0.01 0.13 23.27 -107.50 -2.50 -2.37 15 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.13 2.48 7.70 -52.49 -0.40 2.07 15 25 H 0.10 2.37 7.56 -52.48 -0.40 1.98 15 26 H 0.09 1.45 8.06 -52.48 -0.42 1.02 15 27 H 0.13 2.99 6.18 -52.49 -0.32 2.66 15 28 H 0.29 5.85 8.30 -40.82 -0.34 5.51 15 LS Contribution 265.70 15.07 4.00 4.00 Total: -1.00 -26.38 265.70 -8.24 -34.61 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -2.34 Total: 3.27 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -3.07 Total: -23.52 kcal Atomic # 7 Polarization: -17.26 SS G_CDS: 0.61 Total: -16.65 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 16.27 SS G_CDS: -5.03 Total: 11.24 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.50 Total: -2.37 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.38 -8.24 -34.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396342669.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.312 kcal (2) G-P(sol) polarization free energy of solvation -26.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds