Wall clock time and date at job start Mon Mar 30 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32894 * 124.66636 * 2 1 4 4 C 1.39756 * 115.86608 * 179.97438 * 3 2 1 5 5 C 1.40005 * 112.65910 * 0.02562 * 4 3 2 6 6 C 1.39125 * 120.26131 * 180.02562 * 5 4 3 7 7 C 1.39766 * 121.32576 * 359.92806 * 6 5 4 8 8 C 1.46948 * 119.66443 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00629 * 0.05564 * 8 7 6 10 10 C 1.39448 * 120.66483 * 0.07201 * 7 6 5 11 11 C 1.39875 * 119.95675 * 359.96669 * 10 7 6 12 12 C 1.40703 * 120.28223 * 180.02562 * 11 10 7 13 13 H 1.08005 * 120.00390 * 154.19532 * 12 11 10 14 14 C 1.39987 * 119.99914 * 334.19882 * 12 11 10 15 15 N 1.30838 * 120.00132 * 343.29309 * 14 12 11 16 16 Si 1.86806 * 120.00076 * 163.29127 * 14 12 11 17 17 H 1.48498 * 109.46947 * 59.99901 * 16 14 12 18 18 H 1.48494 * 109.47171 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46938 * 300.00132 * 16 14 12 20 20 S 1.75507 * 124.66572 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.46358 * 90.00183 * 1 2 3 22 22 H 1.08994 * 109.47120 * 209.99955 * 1 2 3 23 23 H 1.08996 * 109.47230 * 330.00417 * 1 2 3 24 24 H 1.08000 * 122.06980 * 359.72736 * 3 2 1 25 25 H 1.08003 * 119.33466 * 179.97438 * 6 5 4 26 26 H 1.08009 * 119.99685 * 180.02562 * 8 7 6 27 27 H 1.07999 * 120.02034 * 179.97438 * 10 7 6 28 28 H 0.96993 * 119.99876 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2629 1.0930 0.0000 4 6 3.6440 0.8792 0.0006 5 6 3.9794 -0.4801 0.0005 6 6 5.3140 -0.8730 0.0015 7 6 6.3482 0.0672 0.0012 8 6 7.7453 -0.3885 0.0017 9 8 7.9963 -1.5751 0.0015 10 6 6.0677 1.4331 0.0013 11 6 4.7400 1.8735 0.0010 12 6 4.4491 3.2501 0.0006 13 1 3.5136 3.6043 -0.4067 14 6 5.3723 4.1607 0.5281 15 7 6.3372 3.7386 1.3044 16 14 5.2265 5.9787 0.1237 17 1 3.9127 6.4865 0.5940 18 1 6.3174 6.7253 0.8002 19 1 5.3338 6.1691 -1.3452 20 16 2.5053 -1.4435 0.0006 21 1 -0.3632 0.0000 -1.0278 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5137 24 1 1.8364 2.0852 -0.0044 25 1 5.5557 -1.9256 0.0018 26 1 8.5487 0.3334 0.0019 27 1 6.8749 2.1506 0.0015 28 1 6.9770 4.3695 1.6695 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396342669.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:22 Heat of formation + Delta-G solvation = -24.868489 kcal Electronic energy + Delta-G solvation = -14689.281261 eV Core-core repulsion = 12181.316945 eV Total energy + Delta-G solvation = -2507.964316 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.41699 -39.24582 -36.59137 -35.45540 -32.08673 -31.74492 -28.59120 -26.94005 -24.42417 -23.93900 -21.71487 -20.73730 -19.29482 -18.04991 -16.97235 -16.77839 -16.52997 -15.94021 -15.45911 -15.21321 -14.71389 -14.63348 -14.12863 -13.76873 -13.63290 -13.26237 -13.17208 -12.96361 -12.72326 -12.18569 -12.14533 -11.72713 -11.47789 -11.34713 -11.14253 -10.65817 -10.11416 -9.06941 -8.81653 -8.58808 -6.36767 -0.37276 0.78680 0.86594 1.05398 1.27255 1.42670 1.52637 1.56197 2.02509 2.16873 2.62831 3.51258 3.57156 4.08284 4.35767 4.44402 4.52691 4.70490 4.81763 4.83021 4.93089 5.05326 5.10770 5.23227 5.33253 5.45996 5.72876 5.85688 5.87896 5.98519 6.40834 6.57079 6.65768 6.76772 8.12551 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.016314 B = 0.010029 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.859451 B = 2791.370309 C = 4421.883906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.213 4.213 3 C -0.098 4.098 4 C -0.184 4.184 5 C -0.116 4.116 6 C -0.191 4.191 7 C -0.149 4.149 8 C 0.398 3.602 9 O -0.510 6.510 10 C -0.151 4.151 11 C 0.108 3.892 12 C -0.449 4.449 13 H 0.089 0.911 14 C 0.039 3.961 15 N -0.795 5.795 16 Si 0.989 3.011 17 H -0.259 1.259 18 H -0.264 1.264 19 H -0.257 1.257 20 S 0.032 5.968 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.136 0.864 25 H 0.099 0.901 26 H 0.140 0.860 27 H 0.134 0.866 28 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.406 2.252 -1.586 5.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.328 4.328 3 C -0.127 4.127 4 C -0.191 4.191 5 C -0.230 4.230 6 C -0.216 4.216 7 C -0.153 4.153 8 C 0.261 3.739 9 O -0.387 6.387 10 C -0.173 4.173 11 C 0.103 3.897 12 C -0.476 4.476 13 H 0.107 0.893 14 C -0.181 4.181 15 N -0.418 5.418 16 Si 0.809 3.191 17 H -0.183 1.183 18 H -0.188 1.188 19 H -0.181 1.181 20 S 0.294 5.706 21 H 0.099 0.901 22 H 0.093 0.907 23 H 0.102 0.898 24 H 0.154 0.846 25 H 0.117 0.883 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.478 0.173 -1.417 4.700 hybrid contribution 0.453 2.011 0.058 2.062 sum -4.025 2.184 -1.359 4.777 Atomic orbital electron populations 1.20307 0.85480 1.03562 1.03216 1.24183 1.00748 0.93956 1.13899 1.19740 0.91691 0.99293 1.02006 1.19631 0.94134 0.92067 1.13290 1.22442 0.97204 0.96399 1.06974 1.19814 0.89836 0.97788 1.14170 1.20589 0.95544 0.94427 1.04758 1.24513 0.91537 0.90270 0.67582 1.90411 1.87568 1.22805 1.37957 1.21364 0.96909 0.92852 1.06165 1.18749 0.90251 0.92442 0.88301 1.19859 1.04144 0.90990 1.32558 0.89252 1.26881 0.92971 1.06573 0.91630 1.69793 1.11932 1.40361 1.19717 0.85117 0.79557 0.74508 0.79943 1.18347 1.18775 1.18145 1.83330 0.95782 1.10039 1.81406 0.90073 0.90738 0.89787 0.84616 0.88329 0.84398 0.84845 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.74 10.34 71.24 0.74 -1.00 15 2 C -0.21 -7.83 6.44 24.51 0.16 -7.68 15 3 C -0.10 -4.16 9.58 21.46 0.21 -3.96 15 4 C -0.18 -8.99 6.02 -19.90 -0.12 -9.11 15 5 C -0.12 -5.51 6.46 22.91 0.15 -5.37 15 6 C -0.19 -9.20 9.57 22.85 0.22 -8.98 15 7 C -0.15 -6.87 5.84 -20.34 -0.12 -6.98 15 8 C 0.40 15.54 11.42 70.10 0.80 16.34 15 9 O -0.51 -22.32 17.09 -3.04 -0.05 -22.37 15 10 C -0.15 -7.22 8.37 22.96 0.19 -7.02 15 11 C 0.11 5.41 5.74 -19.70 -0.11 5.30 15 12 C -0.45 -21.30 8.80 23.30 0.21 -21.09 15 13 H 0.09 4.04 7.50 -2.91 -0.02 4.02 15 14 C 0.04 1.69 5.14 85.26 0.44 2.13 15 15 N -0.79 -35.50 10.97 21.84 0.24 -35.26 15 16 Si 0.99 32.47 29.59 68.60 2.03 34.50 15 17 H -0.26 -8.38 7.11 99.48 0.71 -7.67 15 18 H -0.26 -8.15 7.11 99.48 0.71 -7.44 15 19 H -0.26 -8.33 7.11 99.48 0.71 -7.62 15 20 S 0.03 1.28 23.27 -56.49 -1.31 -0.04 15 21 H 0.08 1.85 8.14 -2.38 -0.02 1.83 15 22 H 0.07 1.71 8.14 -2.39 -0.02 1.69 15 23 H 0.08 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.14 5.31 7.70 -2.91 -0.02 5.29 15 25 H 0.10 4.69 7.56 -2.91 -0.02 4.67 15 26 H 0.14 4.14 8.06 -2.91 -0.02 4.11 15 27 H 0.13 6.16 6.18 -2.91 -0.02 6.14 15 28 H 0.30 11.89 8.30 -92.71 -0.77 11.12 15 Total: -1.00 -57.37 265.70 4.84 -52.53 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 1.19 Total: 18.06 kcal Atomic # 6 Polarization: -50.17 SS G_CDS: 2.75 Total: -47.42 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.24 Total: -35.26 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.05 Total: -22.37 kcal Atomic # 14 Polarization: 32.47 SS G_CDS: 2.03 Total: 34.50 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -1.31 Total: -0.04 kcal Total: -57.37 4.84 -52.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396342669.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.663 kcal (2) G-P(sol) polarization free energy of solvation -57.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds