Wall clock time and date at job start Mon Mar 30 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37338 * 118.74894 * 2 1 4 4 C 1.39768 * 120.89981 * 180.02562 * 3 2 1 5 5 C 1.46270 * 120.46709 * 180.02562 * 4 3 2 6 6 O 1.21390 * 119.99742 * 185.04254 * 5 4 3 7 7 C 1.46456 * 119.06570 * 359.95556 * 4 3 2 8 8 C 1.39758 * 120.72947 * 180.02562 * 7 4 3 9 9 H 1.08004 * 119.99546 * 42.14697 * 8 7 4 10 10 C 1.40513 * 120.00482 * 222.15191 * 8 7 4 11 11 N 1.30523 * 119.99499 * 17.40195 * 10 8 7 12 12 Si 1.86803 * 119.99936 * 197.41173 * 10 8 7 13 13 H 1.48502 * 109.47254 * 59.99855 * 12 10 8 14 14 H 1.48499 * 109.46827 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47095 * 299.99256 * 12 10 8 16 16 C 1.47870 * 118.55089 * 0.04154 * 7 4 3 17 17 C 1.39877 * 128.94464 * 179.97438 * 16 7 4 18 18 C 1.32811 * 115.80955 * 180.27405 * 17 16 7 19 19 S 1.75476 * 110.69288 * 359.59044 * 18 17 16 20 20 C 1.39864 * 118.75542 * 180.02562 * 2 1 3 21 21 H 1.09002 * 109.46970 * 269.97382 * 1 2 3 22 22 H 1.08997 * 109.47677 * 29.97844 * 1 2 3 23 23 H 1.09002 * 109.47342 * 149.97888 * 1 2 3 24 24 H 1.07997 * 119.54875 * 0.02739 * 3 2 1 25 25 H 1.08001 * 120.00015 * 5.03687 * 5 4 3 26 26 H 0.97006 * 119.99743 * 175.02967 * 11 10 8 27 27 H 1.08000 * 122.09597 * 359.97438 * 17 16 7 28 28 H 1.08000 * 124.65688 * 179.72590 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1676 1.2041 0.0000 4 6 3.5643 1.2565 -0.0005 5 6 4.2581 2.5442 0.0000 6 8 5.4678 2.5818 -0.0928 7 6 4.3233 0.0040 -0.0001 8 6 5.7208 0.0159 -0.0001 9 1 6.2549 0.7142 0.6274 10 6 6.4312 -0.8805 -0.8164 11 7 5.8284 -1.4779 -1.8081 12 14 8.2379 -1.2172 -0.4821 13 1 8.3925 -1.7770 0.8847 14 1 8.7519 -2.1925 -1.4770 15 1 9.0054 0.0496 -0.5880 16 6 3.5788 -1.2735 -0.0001 17 6 4.0760 -2.5810 -0.0002 18 6 3.1640 -3.5464 -0.0058 19 16 1.5449 -2.8700 0.0001 20 6 2.1799 -1.2262 -0.0005 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3634 -0.8898 -0.5142 24 1 1.6000 2.1229 0.0004 25 1 3.6940 3.4615 0.0830 26 1 6.3345 -2.0404 -2.4151 27 1 5.1352 -2.7921 -0.0007 28 1 3.3881 -4.6029 -0.0109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396343439.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:49 Heat of formation + Delta-G solvation = -3.556162 kcal Electronic energy + Delta-G solvation = -15206.756333 eV Core-core repulsion = 12699.716188 eV Total energy + Delta-G solvation = -2507.040144 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.39444 -37.00488 -34.60874 -33.82119 -31.10047 -28.66323 -27.40822 -24.32083 -23.41501 -22.03293 -19.66109 -18.70750 -17.99598 -15.90910 -15.67114 -15.01257 -14.39700 -14.04635 -13.70335 -13.28754 -12.85753 -12.69257 -12.60790 -11.98561 -11.79924 -11.66996 -11.49555 -11.24735 -11.04118 -10.73551 -10.67671 -10.15969 -9.74723 -9.73608 -9.25606 -8.37905 -8.03000 -7.34721 -7.21239 -6.60000 -4.66845 1.71672 2.26760 2.60014 2.92244 2.95593 2.98012 3.02516 3.21751 3.71363 3.99069 4.33665 5.21040 5.46292 5.76347 5.91922 5.97039 6.14940 6.26577 6.42379 6.53960 6.55419 6.73922 6.86543 6.93241 7.09276 7.19383 7.52158 7.65149 7.69911 7.83256 8.20472 8.37624 8.55026 8.91499 9.75174 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.020715 B = 0.011552 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.381810 B = 2423.171107 C = 3629.213822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.210 4.210 3 C 0.002 3.998 4 C -0.332 4.332 5 C 0.373 3.627 6 O -0.491 6.491 7 C 0.193 3.807 8 C -0.390 4.390 9 H 0.109 0.891 10 C 0.072 3.928 11 N -0.749 5.749 12 Si 0.913 3.087 13 H -0.257 1.257 14 H -0.274 1.274 15 H -0.256 1.256 16 C -0.134 4.134 17 C -0.034 4.034 18 C -0.275 4.275 19 S 0.012 5.988 20 C -0.057 4.057 21 H 0.047 0.953 22 H 0.051 0.949 23 H 0.046 0.954 24 H 0.104 0.896 25 H 0.062 0.938 26 H 0.293 0.707 27 H 0.126 0.874 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 -1.287 1.815 4.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.216 4.216 3 C -0.019 4.019 4 C -0.337 4.337 5 C 0.239 3.761 6 O -0.371 6.371 7 C 0.187 3.813 8 C -0.415 4.415 9 H 0.127 0.873 10 C -0.153 4.153 11 N -0.371 5.371 12 Si 0.736 3.264 13 H -0.181 1.181 14 H -0.198 1.198 15 H -0.180 1.180 16 C -0.142 4.142 17 C -0.063 4.063 18 C -0.408 4.408 19 S 0.273 5.727 20 C -0.173 4.173 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.122 0.878 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.144 0.856 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.473 -2.226 1.588 5.243 hybrid contribution 1.933 0.240 -0.169 1.955 sum -2.541 -1.986 1.419 3.523 Atomic orbital electron populations 1.20483 0.93112 1.00731 1.00192 1.18149 0.93897 0.90521 1.19047 1.20440 0.93149 0.95134 0.93181 1.21147 0.92863 0.94410 1.25282 1.22998 0.89162 0.91054 0.72898 1.90451 1.17481 1.90189 1.38975 1.19381 0.91890 0.87316 0.82751 1.19907 0.91631 1.12117 1.17856 0.87334 1.26277 1.02223 0.92326 0.94434 1.69687 1.39353 1.19324 1.08711 0.86240 0.80626 0.79714 0.79850 1.18090 1.19835 1.18041 1.19195 0.90625 0.93573 1.10820 1.19768 0.99637 0.91174 0.95689 1.24674 0.94687 1.01761 1.19710 1.83394 1.09786 0.99096 1.80388 1.22408 0.96063 0.94920 1.03942 0.93455 0.93003 0.93464 0.87823 0.92169 0.89573 0.85595 0.83742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.79 36.01 0.35 -1.16 15 2 C -0.21 -4.47 5.90 -104.34 -0.62 -5.08 15 3 C 0.00 0.05 9.29 -39.34 -0.37 -0.32 15 4 C -0.33 -7.81 6.05 -102.79 -0.62 -8.43 15 5 C 0.37 8.12 11.41 33.96 0.39 8.51 15 6 O -0.49 -12.30 14.78 5.46 0.08 -12.22 15 7 C 0.19 4.97 5.63 -102.08 -0.57 4.40 15 8 C -0.39 -9.98 7.34 -38.16 -0.28 -10.26 15 9 H 0.11 2.83 6.55 -52.48 -0.34 2.49 15 10 C 0.07 1.71 3.97 -17.25 -0.07 1.64 15 11 N -0.75 -18.17 10.90 55.58 0.61 -17.57 15 12 Si 0.91 17.82 29.60 -169.99 -5.03 12.79 15 13 H -0.26 -4.91 7.11 56.52 0.40 -4.50 15 14 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 15 H -0.26 -5.11 7.11 56.52 0.40 -4.71 15 16 C -0.13 -3.33 5.51 -104.69 -0.58 -3.91 15 17 C -0.03 -0.77 8.31 -40.83 -0.34 -1.11 15 18 C -0.28 -5.65 11.11 28.87 0.32 -5.33 15 19 S 0.01 0.24 22.45 -107.50 -2.41 -2.17 15 20 C -0.06 -1.32 6.29 -38.32 -0.24 -1.56 15 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.05 0.78 8.05 -51.93 -0.42 0.36 15 23 H 0.05 0.80 7.46 -51.93 -0.39 0.41 15 24 H 0.10 1.77 8.05 -52.49 -0.42 1.35 15 25 H 0.06 1.06 8.06 -52.49 -0.42 0.64 15 26 H 0.29 6.42 8.30 -40.82 -0.34 6.08 15 27 H 0.13 2.89 6.23 -52.49 -0.33 2.57 15 28 H 0.14 2.53 8.06 -52.49 -0.42 2.11 15 LS Contribution 258.53 15.07 3.90 3.90 Total: -1.00 -27.69 258.53 -7.79 -35.47 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -2.30 Total: 2.41 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -2.62 Total: -22.61 kcal Atomic # 7 Polarization: -18.17 SS G_CDS: 0.61 Total: -17.57 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.22 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -2.41 Total: -2.17 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.69 -7.79 -35.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396343439.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.918 kcal (2) G-P(sol) polarization free energy of solvation -27.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds